Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 5.2e-122 441.0 219 100.0
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 8.7e-85 317.4 216 70.4
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 3.1e-82 308.9 217 70.0
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 6.9e-82 307.8 216 70.4
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 3.4e-81 305.4 222 67.1
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 9.9e-81 303.9 216 68.5
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 1.3e-80 303.5 216 71.3
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 3.8e-80 302.0 216 67.6
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 3.8e-80 302.0 216 67.6
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 6.4e-80 301.2 214 67.8
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 8.4e-80 300.8 216 66.7
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 5.4e-79 298.1 213 69.5
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 7.1e-79 297.7 218 67.0
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 2.7e-78 295.8 218 67.4
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 3.5e-78 295.4 217 69.6
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 1.7e-77 293.1 217 65.9
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 1.7e-77 293.1 213 67.6
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.0e-77 292.4 215 63.3
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 3.9e-77 292.0 217 65.9
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 6.6e-77 291.2 216 66.2
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 8.7e-77 290.8 214 67.3
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.5e-76 290.0 216 67.6
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 2.5e-76 289.3 214 67.3
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 3.3e-76 288.9 216 63.4
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 4.3e-76 288.5 214 66.8
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 4.3e-76 288.5 216 64.8
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 4.3e-76 288.5 216 65.3
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 9.6e-76 287.3 207 67.6
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 1.6e-75 286.6 213 65.3
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 2.1e-75 286.2 216 65.7
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 2.1e-75 286.2 213 66.7
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 4.8e-75 285.0 219 63.5
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 4.8e-75 285.0 217 64.1
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 3.1e-74 282.3 219 63.5
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 5.3e-74 281.6 215 66.0
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 1.2e-73 280.4 219 62.6
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 2.0e-73 279.6 209 65.6
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 5.8e-73 278.1 214 64.0
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 7.6e-73 277.7 224 62.5
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 9.9e-73 277.3 218 63.8
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 3.8e-72 275.4 212 65.1
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 3.8e-72 275.4 219 63.9
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 3.8e-72 275.4 210 62.4
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 1.4e-71 273.5 209 62.7
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 1.9e-71 273.1 213 62.9
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 7.1e-71 271.2 210 61.9
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 2.1e-70 269.6 210 63.3
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 2.1e-70 269.6 210 63.3
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 2.7e-70 269.2 212 65.6
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 7.9e-70 267.7 210 62.4
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 1.0e-69 267.3 216 63.9
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 3.9e-69 265.4 217 61.8
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 3.9e-69 265.4 218 58.7
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 8.7e-69 264.2 212 62.3
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 1.5e-68 263.5 214 60.7
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 1.5e-68 263.5 209 61.2
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 1.5e-68 263.5 218 61.5
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 1.9e-68 263.1 213 60.6
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 7.4e-68 261.2 209 58.9
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 9.6e-68 260.8 213 61.5
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 9.6e-68 260.8 211 63.0
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 1.3e-67 260.4 207 61.4
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 1.6e-67 260.0 214 60.3
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 1.6e-67 260.0 219 59.4
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 2.1e-67 259.6 211 62.1
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 8.1e-67 257.7 211 60.2
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 8.1e-67 257.7 212 62.3
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 1.4e-66 256.9 213 62.4
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 6.9e-66 254.6 219 58.4
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 2.0e-65 253.1 211 56.9
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 3.4e-65 252.3 214 58.9
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 3.4e-65 252.3 216 59.3
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 5.8e-65 251.5 213 61.5
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 3.8e-64 248.8 216 56.9
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 3.8e-64 248.8 215 57.7
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 8.4e-64 247.7 210 60.5
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 1.1e-63 247.3 210 61.4
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.1e-63 247.3 210 61.4
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 1.1e-63 247.3 210 61.4
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.1e-63 247.3 221 57.0
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 1.4e-63 246.9 216 59.7
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 2.5e-63 246.1 226 60.2
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 7.1e-63 244.6 184 65.2
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 3.5e-62 242.3 211 56.9
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 6.0e-62 241.5 210 60.5
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 1.9e-60 236.5 209 55.5
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 5.7e-60 235.0 238 53.8
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 1.3e-59 233.8 166 71.1
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 8.2e-59 231.1 216 56.9
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 9.0e-58 227.6 215 50.2
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 1.2e-57 227.3 213 52.1
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 1.5e-57 226.9 213 53.5
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 5.9e-57 224.9 224 50.4
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 2.2e-56 223.0 228 53.1
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 1.9e-55 219.9 215 54.0
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 3.0e-53 212.6 263 47.9
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 3.9e-53 212.2 219 50.7
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 1.1e-50 204.1 210 54.3
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 5.0e-48 195.3 215 48.8
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 5.5e-47 191.8 135 71.9
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 2.1e-46 189.9 215 47.4
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 2.3e-45 186.4 215 42.8
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 2.6e-44 183.0 211 46.4
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.7e-43 180.3 179 54.7
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.1e-42 177.6 233 40.3
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.0e-40 171.0 176 54.0
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 2.9e-40 169.5 182 51.6
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 5.0e-40 168.7 84 95.2
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 6.5e-40 168.3 215 47.0
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 2.4e-26 123.2 165 43.6
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 4.2e-23 112.5 90 62.2
Cpa.g.sc41.11 Carica papaya HOM05D006908 ORTHO05D008662 1.3e-19 100.9 50 92.0
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 4.0e-13 79.3 78 46.2
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 9.5e-07 58.2 127 31.5
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.2e-06 57.8 47 46.8
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 1.6e-06 57.4 125 31.2
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 1.6e-06 57.4 127 26.8
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 2.1e-06 57.0 132 29.5
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 2.8e-06 56.6 130 30.0
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 2.8e-06 56.6 125 31.2
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 6.1e-06 55.5 137 31.4


User provided reference genes

Program Settings