Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc0.170 Carica papaya HOM05D002939 ORTHO05D003391 4.1e-74 281.2 129 100.0
Sed0013833 Sechium edule HOM05D002939 ORTHO05D003391 4.3e-15 85.1 119 36.1
CSS0037606 Camellia sinensis var. sinensis HOM05D002939 ORTHO05D003391 5.6e-15 84.7 75 52.0
Actinidia30483 Actinidia chinensis HOM05D002939 ORTHO05D003391 7.3e-15 84.3 75 50.7
Gohir.A12G137100 Gossypium hirsutum HOM05D002939 ORTHO05D003391 7.3e-15 84.3 76 51.3
ClCG02G001270 Citrullus lanatus HOM05D002939 ORTHO05D003391 9.5e-15 84.0 75 50.7
CsaV3_7G004160 Cucumis sativus L. HOM05D002939 ORTHO05D003391 9.5e-15 84.0 75 50.7
Gohir.D12G141000 Gossypium hirsutum HOM05D002939 ORTHO05D003391 9.5e-15 84.0 76 51.3
Gorai.008G152400 Gossypium raimondii HOM05D002939 ORTHO05D003391 9.5e-15 84.0 76 51.3
MELO3C018761.2 Cucumis melo HOM05D002939 ORTHO05D003391 1.2e-14 83.6 79 49.4
Duzib052G0602 Durio zibethinus HOM05D002939 ORTHO05D003391 1.2e-14 83.6 75 52.0
Duzib132G0253 Durio zibethinus HOM05D002939 ORTHO05D003391 1.2e-14 83.6 75 52.0
Thecc.02G173400 Theobroma cacao HOM05D002939 ORTHO05D003391 1.2e-14 83.6 75 52.0
Lalb_Chr22g0356401 Lupinus albus HOM05D002939 ORTHO05D003391 1.6e-14 83.2 75 50.7
HPP92_001810 Vanilla planifolia HOM05D002939 ORTHO05D003391 1.6e-14 83.2 75 52.0
Aqoxy1G02703 Aquilegia oxysepala HOM05D002939 ORTHO05D003391 2.1e-14 82.8 75 52.0
MBI02_g10552_MAGBIO Magnolia biondii HOM05D002939 ORTHO05D003391 2.1e-14 82.8 75 49.3
CiPaw.03G170900 Carya illinoinensis HOM05D002939 ORTHO05D003391 2.8e-14 82.4 75 50.7
CiPaw.04G123300 Carya illinoinensis HOM05D002939 ORTHO05D003391 2.8e-14 82.4 75 50.7
Dinv15472 Davidia involucrata HOM05D002939 ORTHO05D003391 2.8e-14 82.4 75 50.7
Duzib248G1539 Durio zibethinus HOM05D002939 ORTHO05D003391 2.8e-14 82.4 75 50.7
vmacro09269 Vaccinium macrocarpon HOM05D002939 ORTHO05D003391 2.8e-14 82.4 75 48.0
Cpa.g.sc34.111 Carica papaya HOM05D002939 ORTHO05D003391 3.6e-14 82.0 75 49.3
Gohir.A03G159200 Gossypium hirsutum HOM05D002939 ORTHO05D003391 3.6e-14 82.0 75 50.7
Gohir.D02G182400 Gossypium hirsutum HOM05D002939 ORTHO05D003391 3.6e-14 82.0 75 50.7
Gorai.005G204800 Gossypium raimondii HOM05D002939 ORTHO05D003391 3.6e-14 82.0 75 50.7
COL.COLO4_13700 Corchorus olitorius HOM05D002939 ORTHO05D003391 4.7e-14 81.6 75 50.7
Duzib268G1116 Durio zibethinus HOM05D002939 ORTHO05D003391 4.7e-14 81.6 138 37.7
COL.COLO4_09468 Corchorus olitorius HOM05D002939 ORTHO05D003391 6.2e-14 81.3 82 46.3
Manes.13G150600 Manihot esculenta HOM05D002939 ORTHO05D003391 6.2e-14 81.3 75 49.3
CSS0026767 Camellia sinensis var. sinensis HOM05D002939 ORTHO05D003391 8.0e-14 80.9 75 49.3
Lj3g0016336 Lotus japonicus HOM05D002939 ORTHO05D003391 8.0e-14 80.9 75 50.7
Manes.12G079700 Manihot esculenta HOM05D002939 ORTHO05D003391 8.0e-14 80.9 75 50.7
Nitab4.5_0009520g0010 Nicotiana tabacum HOM05D002939 ORTHO05D003391 8.0e-14 80.9 128 34.4
Potri.013G145400 Populus trichocarpa HOM05D002939 ORTHO05D003391 8.0e-14 80.9 75 49.3
TWI18G0096 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 8.0e-14 80.9 75 48.0
Ciclev10016505m.g Citrus clementina HOM05D002939 ORTHO05D003391 1.1e-13 80.5 75 49.3
Nitab4.5_0003018g0050 Nicotiana tabacum HOM05D002939 ORTHO05D003391 1.1e-13 80.5 128 34.4
Potri.019G104500 Populus trichocarpa HOM05D002939 ORTHO05D003391 1.1e-13 80.5 75 49.3
Sabra13G0117100 Salix brachista HOM05D002939 ORTHO05D003391 1.1e-13 80.5 75 49.3
THA.LOC104804063 Tarenaya hassleriana HOM05D002939 ORTHO05D003391 1.1e-13 80.5 119 38.7
Nn1g03934 Nelumbo nucifera HOM05D002939 ORTHO05D003391 1.4e-13 80.1 75 48.0
TWI75G1131 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 1.4e-13 80.1 75 46.7
Nitab4.5_0007732g0030 Nicotiana tabacum HOM05D002939 ORTHO05D003391 1.8e-13 79.7 75 48.0
THA.LOC104814495 Tarenaya hassleriana HOM05D002939 ORTHO05D003391 1.8e-13 79.7 75 48.0
arahy.Tifrunner.gnm1.ann1.A9FWXT Arachis hypogaea HOM05D002939 ORTHO05D003391 2.3e-13 79.3 75 48.0
arahy.Tifrunner.gnm1.ann1.SAD4HJ Arachis hypogaea HOM05D002939 ORTHO05D003391 2.3e-13 79.3 75 48.0
PGR142G4146 Punica granatum HOM05D002939 ORTHO05D003391 2.3e-13 79.3 75 48.0
PGSC0003DMG400018322 Solanum tuberosum HOM05D002939 ORTHO05D003391 2.3e-13 79.3 75 49.3
GSVIVG01030570001 Vitis vinifera HOM05D002939 ORTHO05D003391 2.3e-13 79.3 75 46.7
Cc00_g21110 Coffea canephora HOM05D002939 ORTHO05D003391 3.1e-13 79.0 75 48.0
Glyma.06G297100 Glycine max HOM05D002939 ORTHO05D003391 3.1e-13 79.0 75 48.0
Glyma.12G108000 Glycine max HOM05D002939 ORTHO05D003391 3.1e-13 79.0 75 48.0
MD17G1082000 Malus domestica HOM05D002939 ORTHO05D003391 3.1e-13 79.0 75 48.0
Sp7g26140 Schrenkiella parvula HOM05D002939 ORTHO05D003391 3.1e-13 79.0 75 45.3
Dinv23696 Davidia involucrata HOM05D002939 ORTHO05D003391 4.0e-13 78.6 75 49.3
Thhalv10026038m.g Eutrema salsugineum HOM05D002939 ORTHO05D003391 4.0e-13 78.6 75 45.3
Peaxi162Scf00007g02859 Petunia axillaris HOM05D002939 ORTHO05D003391 4.0e-13 78.6 75 48.0
TAR626G0871 Trochodendron aralioides HOM05D002939 ORTHO05D003391 4.0e-13 78.6 75 49.3
Atru.chr6.3050 Acer truncatum HOM05D002939 ORTHO05D003391 5.2e-13 78.2 75 48.0
Carub.0007s1257 Capsella rubella HOM05D002939 ORTHO05D003391 6.8e-13 77.8 75 45.3
Cpa.g.sc80.104 Carica papaya HOM05D002939 ORTHO05D003391 6.8e-13 77.8 75 45.3
PSO675G2902 Papaver somniferum HOM05D002939 ORTHO05D003391 6.8e-13 77.8 75 49.3
TPR.G27079 Trifolium pratense HOM05D002939 ORTHO05D003391 6.8e-13 77.8 75 48.0
Aa31LG2G22060 Aethionema arabicum HOM05D002939 ORTHO05D003391 8.9e-13 77.4 75 45.3
BcaC09g50506 Brassica carinata HOM05D002939 ORTHO05D003391 8.9e-13 77.4 75 44.0
A01p19610 Brassica napus HOM05D002939 ORTHO05D003391 8.9e-13 77.4 75 44.0
BraA01t01895Z Brassica rapa HOM05D002939 ORTHO05D003391 8.9e-13 77.4 75 44.0
Lj3g0000198 Lotus japonicus HOM05D002939 ORTHO05D003391 8.9e-13 77.4 75 45.3
Phvul.011G112300 Phaseolus vulgaris HOM05D002939 ORTHO05D003391 8.9e-13 77.4 75 46.7
Solyc07g054450.4 Solanum lycopersicum HOM05D002939 ORTHO05D003391 8.9e-13 77.4 75 48.0
Sopen07g028390 Solanum pennellii HOM05D002939 ORTHO05D003391 8.9e-13 77.4 75 48.0
Nn1g06722 Nelumbo nucifera HOM05D002939 ORTHO05D003391 1.2e-12 77.0 75 45.3
BcaC06g36772 Brassica carinata HOM05D002939 ORTHO05D003391 1.5e-12 76.6 75 45.3
C01p24640 Brassica napus HOM05D002939 ORTHO05D003391 1.5e-12 76.6 75 44.0
C07p00100 Brassica napus HOM05D002939 ORTHO05D003391 1.5e-12 76.6 75 45.3
BolC1t02414H Brassica oleracea HOM05D002939 ORTHO05D003391 1.5e-12 76.6 75 44.0
BolC7t40461H Brassica oleracea HOM05D002939 ORTHO05D003391 1.5e-12 76.6 75 45.3
TPR.G21653 Trifolium pratense HOM05D002939 ORTHO05D003391 1.5e-12 76.6 75 46.7
AL7G24410 Arabidopsis lyrata HOM05D002939 ORTHO05D003391 2.0e-12 76.3 75 44.0
BraA07t27786Z Brassica rapa HOM05D002939 ORTHO05D003391 2.0e-12 76.3 75 45.3
CiPaw.11G175200 Carya illinoinensis HOM05D002939 ORTHO05D003391 2.0e-12 76.3 123 34.1
HanXRQChr10g0297091 Helianthus annuus HOM05D002939 ORTHO05D003391 2.0e-12 76.3 72 47.2
Lsat_1_v5_gn_4_68920 Lactuca sativa HOM05D002939 ORTHO05D003391 2.0e-12 76.3 81 44.4
Oeu041295.1 Olea europaea HOM05D002939 ORTHO05D003391 2.0e-12 76.3 75 46.7
CANSAT64G1668 Cannabis sativa HOM05D002939 ORTHO05D003391 2.6e-12 75.9 75 45.3
Lalb_Chr03g0029231 Lupinus albus HOM05D002939 ORTHO05D003391 2.6e-12 75.9 75 45.3
MD09G1092100 Malus domestica HOM05D002939 ORTHO05D003391 2.6e-12 75.9 75 46.7
RcHm_v2.0_Chr2g0162081 Rosa chinensis HOM05D002939 ORTHO05D003391 2.6e-12 75.9 75 45.3
Sed0025006 Sechium edule HOM05D002939 ORTHO05D003391 2.6e-12 75.9 75 45.3
ECA234G1210 Erigeron canadensis HOM05D002939 ORTHO05D003391 3.4e-12 75.5 75 45.3
Manes.15G083700 Manihot esculenta HOM05D002939 ORTHO05D003391 3.4e-12 75.5 76 46.1
Medtr0072s0040 Medicago truncatula HOM05D002939 ORTHO05D003391 3.4e-12 75.5 75 45.3
Prupe.3G232900 Prunus persica HOM05D002939 ORTHO05D003391 3.4e-12 75.5 75 45.3
Carub.0003s3545 Capsella rubella HOM05D002939 ORTHO05D003391 4.4e-12 75.1 74 44.6
Thhalv10002089m.g Eutrema salsugineum HOM05D002939 ORTHO05D003391 4.4e-12 75.1 74 44.6
FvH4_6g44900 Fragaria vesca HOM05D002939 ORTHO05D003391 4.4e-12 75.1 75 45.3
Aa31LG8G17660 Aethionema arabicum HOM05D002939 ORTHO05D003391 5.8e-12 74.7 74 45.9
Aqoxy4G01374 Aquilegia oxysepala HOM05D002939 ORTHO05D003391 5.8e-12 74.7 85 41.2
AL3G53990 Arabidopsis lyrata HOM05D002939 ORTHO05D003391 5.8e-12 74.7 74 43.2
AT2G20825 Arabidopsis thaliana HOM05D002939 ORTHO05D003391 5.8e-12 74.7 74 43.2
AT4G28190 Arabidopsis thaliana HOM05D002939 ORTHO05D003391 5.8e-12 74.7 75 42.7
CsaV3_3G044410 Cucumis sativus L. HOM05D002939 ORTHO05D003391 5.8e-12 74.7 119 31.1
HanXRQChr05g0140461 Helianthus annuus HOM05D002939 ORTHO05D003391 5.8e-12 74.7 75 46.7
Psat7g199800 Pisum sativum HOM05D002939 ORTHO05D003391 5.8e-12 74.7 75 45.3
CANSAT11G1650 Cannabis sativa HOM05D002939 ORTHO05D003391 7.5e-12 74.3 119 35.3
MELO3C018202.2 Cucumis melo HOM05D002939 ORTHO05D003391 7.5e-12 74.3 119 31.1
Duzib213G0790 Durio zibethinus HOM05D002939 ORTHO05D003391 7.5e-12 74.3 119 35.3
BcaC06g32639 Brassica carinata HOM05D002939 ORTHO05D003391 9.8e-12 73.9 75 44.0
BcaNung01589 Brassica carinata HOM05D002939 ORTHO05D003391 9.8e-12 73.9 75 42.7
C07p56020 Brassica napus HOM05D002939 ORTHO05D003391 9.8e-12 73.9 75 44.0
CARHR235900 Cardamine hirsuta HOM05D002939 ORTHO05D003391 9.8e-12 73.9 75 44.0
FAN14G1254 Fragaria x ananassa HOM05D002939 ORTHO05D003391 9.8e-12 73.9 75 44.0
Lj8A116T74 Lonicera japonica HOM05D002939 ORTHO05D003391 9.8e-12 73.9 75 42.7
Sp3g34060 Schrenkiella parvula HOM05D002939 ORTHO05D003391 9.8e-12 73.9 74 44.6
Eucgr.K00939 Eucalyptus grandis HOM05D002939 ORTHO05D003391 1.3e-11 73.6 76 46.1
Sed0018022 Sechium edule HOM05D002939 ORTHO05D003391 1.3e-11 73.6 82 46.3
Psat5g270120 Pisum sativum HOM05D002939 ORTHO05D003391 2.2e-11 72.8 75 45.3
A03p57900 Brassica napus HOM05D002939 ORTHO05D003391 2.9e-11 72.4 75 42.7
BolC7t46079H Brassica oleracea HOM05D002939 ORTHO05D003391 2.9e-11 72.4 75 42.7
BraA03t14854Z Brassica rapa HOM05D002939 ORTHO05D003391 2.9e-11 72.4 75 42.7
CARHR111530 Cardamine hirsuta HOM05D002939 ORTHO05D003391 2.9e-11 72.4 74 43.2
Cpa.g.sc280.1 Carica papaya HOM05D002939 ORTHO05D121041 2.9e-11 72.4 96 42.7
PSO832G1320 Papaver somniferum HOM05D002939 ORTHO05D003391 2.9e-11 72.4 81 42.0
CAN.G274.5 Capsicum annuum HOM05D002939 ORTHO05D003391 3.7e-11 72.0 81 43.2
FAN09G4592 Fragaria x ananassa HOM05D002939 ORTHO05D003391 3.7e-11 72.0 75 44.0
HanXRQChr17g0542471 Helianthus annuus HOM05D002939 ORTHO05D003391 3.7e-11 72.0 75 44.0
Medtr2g090080 Medicago truncatula HOM05D002939 ORTHO05D003391 3.7e-11 72.0 75 45.3
FAN05G5001 Fragaria x ananassa HOM05D002939 ORTHO05D003391 4.9e-11 71.6 75 44.0
Peaxi162Scf00485g00037 Petunia axillaris HOM05D002939 ORTHO05D003391 6.4e-11 71.2 154 28.6
BcaB03g16872 Brassica carinata HOM05D002939 ORTHO05D003391 8.3e-11 70.9 74 44.6
Lalb_Chr01g0005401 Lupinus albus HOM05D002939 ORTHO05D003391 8.3e-11 70.9 75 42.7
PSO210G1245 Papaver somniferum HOM05D002939 ORTHO05D003391 8.3e-11 70.9 81 40.7
CAN.G318.16 Capsicum annuum HOM05D002939 ORTHO05D003391 1.1e-10 70.5 81 42.0
Migut.B00918 Erythranthe guttata HOM05D002939 ORTHO05D003391 1.9e-10 69.7 82 40.2
PSO541G3829 Papaver somniferum HOM05D002939 ORTHO05D003391 1.9e-10 69.7 75 45.3
Hund08038 Selenicereus undatus HOM05D002939 ORTHO05D003391 1.9e-10 69.7 74 44.6
DCAR_021229 Daucus carota HOM05D002939 ORTHO05D003391 2.4e-10 69.3 75 40.0
FAN02G0547 Fragaria x ananassa HOM05D002939 ORTHO05D003391 3.2e-10 68.9 95 36.8
Zm00001eb369850 Zea mays HOM05D002939 ORTHO05D003391 3.2e-10 68.9 75 44.0
Migut.E00991 Erythranthe guttata HOM05D002939 ORTHO05D003391 4.1e-10 68.6 76 43.4
Os01g0780800 Oryza sativa ssp. japonica HOM05D002939 ORTHO05D003391 5.4e-10 68.2 75 42.7
Migut.E00987 Erythranthe guttata HOM05D002939 ORTHO05D003391 7.0e-10 67.8 76 43.4
Migut.E00988 Erythranthe guttata HOM05D002939 ORTHO05D003391 9.2e-10 67.4 76 43.4
Migut.B00917 Erythranthe guttata HOM05D002939 ORTHO05D003391 1.2e-09 67.0 82 39.0
Peaxi162Scf01111g00019 Petunia axillaris HOM05D002939 ORTHO05D003391 1.6e-09 66.6 75 42.7
Thecc.07G073100 Theobroma cacao HOM05D002939 ORTHO05D003391 2.7e-09 65.9 144 30.6
Duzib213G1065 Durio zibethinus HOM05D002939 ORTHO05D003391 3.5e-09 65.5 119 34.5
Oeu060538.1 Olea europaea HOM05D002939 ORTHO05D003391 3.5e-09 65.5 76 38.2
TWI38G1430 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 4.6e-09 65.1 71 43.7
Lsat_1_v5_gn_3_39261 Lactuca sativa HOM05D002939 ORTHO05D003391 7.8e-09 64.3 75 41.3
SHI10467 Sapria himalayana HOM05D002939 ORTHO05D003391 7.8e-09 64.3 76 42.1
Os05g0502700 Oryza sativa ssp. japonica HOM05D002939 ORTHO05D003391 1.0e-08 63.9 74 41.9
Atru.chr2.2835 Acer truncatum HOM05D002939 ORTHO05D003391 1.3e-08 63.5 122 32.0
Cc02_g28040 Coffea canephora HOM05D002939 ORTHO05D003391 1.7e-08 63.2 71 40.8
TWI38G0298 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 1.7e-08 63.2 82 39.0
Glyma.06G252100 Glycine max HOM05D002939 ORTHO05D003391 3.9e-08 62.0 121 31.4
SGA_v2.0_scaffold34G13712 Striga asiatica HOM05D002939 ORTHO05D003391 3.9e-08 62.0 76 36.8
TWI38G0608 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 3.9e-08 62.0 71 42.3
Glyma.06G250300 Glycine max HOM05D002939 ORTHO05D003391 4.3e-07 58.5 119 28.6
Glyma.06G250400 Glycine max HOM05D002939 ORTHO05D003391 5.6e-07 58.2 119 28.6
RcHm_v2.0_Chr5g0035151 Rosa chinensis HOM05D002939 ORTHO05D003391 5.6e-07 58.2 56 42.9
Lj3g0001486 Lotus japonicus HOM05D002939 ORTHO05D003391 7.3e-07 57.8 119 27.7
SEGI_02317 Sequoiadendron giganteum HOM05D002939 ORTHO05D003391 7.3e-07 57.8 75 36.0
Glyma.06G250500 Glycine max HOM05D002939 ORTHO05D003391 9.5e-07 57.4 119 27.7
EL10Ac4g08081 Beta vulgaris HOM05D002939 ORTHO05D003391 1.2e-06 57.0 76 39.5
Actinidia05140 Actinidia chinensis HOM05D002939 ORTHO05D003391 2.8e-06 55.8 75 37.3


User provided reference genes

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