Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 2.0e-222 776.2 645 100.0
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 3.5e-142 509.6 649 80.6
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 4.0e-138 496.1 651 79.3
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 2.4e-135 486.9 648 79.2
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 4.7e-131 472.6 649 78.0
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 3.5e-126 456.4 651 77.4
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 1.3e-123 448.0 655 75.7
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.8e-122 444.1 649 75.5
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 4.5e-121 439.5 648 76.5
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 6.4e-120 435.6 648 76.4
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.5e-118 429.9 649 74.7
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 3.5e-118 429.9 650 76.0
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 3.0e-117 426.8 651 75.6
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 2.5e-116 423.7 650 74.9
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 8.1e-115 418.7 650 75.1
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 5.3e-114 416.0 639 74.6
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 2.0e-113 414.1 653 74.4
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 3.4e-113 413.3 650 74.5
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 9.9e-113 411.8 651 74.7
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.3e-112 411.4 647 73.3
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.9e-112 410.2 649 73.8
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 3.8e-112 409.8 650 75.1
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 6.7e-109 399.1 641 73.2
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 2.5e-108 397.1 651 73.7
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 6.9e-106 389.0 654 73.4
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 2.0e-105 387.5 652 72.9
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 2.6e-105 387.1 652 73.2
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 2.2e-104 384.0 658 72.3
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 1.4e-103 381.3 653 72.6
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.2e-102 378.3 653 70.8
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 3.0e-101 373.6 637 74.1
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.9e-100 370.9 650 72.5
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.3e-100 370.2 587 77.9
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 2.9e-96 357.1 635 72.4
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.1e-95 355.1 661 70.7
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 1.1e-95 355.1 639 71.2
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 4.2e-95 353.2 656 70.3
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 4.2e-95 353.2 655 70.1
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 9.3e-95 352.1 652 70.7
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 7.9e-94 349.0 645 70.5
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 2.3e-93 347.4 656 69.7
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 1.9e-92 344.4 643 70.5
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 3.3e-92 343.6 649 69.8
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 4.3e-92 343.2 640 70.0
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.3e-91 341.7 640 69.4
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.4e-90 338.2 643 69.7
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 4.1e-90 336.7 646 70.0
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 1.0e-88 332.0 639 69.6
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.2e-88 330.9 642 69.2
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 2.2e-88 330.9 625 69.6
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 1.4e-87 328.2 651 69.3
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.2e-86 325.1 629 70.6
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 1.6e-86 324.7 646 69.2
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 3.6e-86 323.6 641 69.4
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 6.1e-86 322.8 635 69.4
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.0e-85 322.0 625 69.1
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.4e-85 321.6 643 67.8
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 1.8e-85 321.2 651 68.7
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 8.8e-85 318.9 621 69.1
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 8.8e-85 318.9 621 69.1
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 8.8e-85 318.9 649 68.9
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 9.7e-84 315.5 638 67.9
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.8e-83 313.9 648 69.3
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 3.7e-83 313.5 629 69.2
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 3.1e-82 310.5 636 59.0
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 9.1e-82 308.9 645 69.1
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.2e-81 308.5 645 69.1
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 3.6e-78 297.0 660 67.9
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.8e-77 294.7 648 67.1
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 2.3e-77 294.3 624 67.5
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 5.2e-77 293.1 622 69.1
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 5.2e-77 293.1 595 71.9
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 8.8e-77 292.4 649 65.9
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 1.1e-76 292.0 261 62.8
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.0e-76 291.2 637 67.2
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 9.7e-76 288.9 644 67.2
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.7e-75 288.1 647 66.2
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 3.7e-75 287.0 624 67.6
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 9.1e-74 282.3 658 67.3
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 2.6e-73 280.8 658 66.6
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 2.6e-73 280.8 624 67.0
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 3.5e-73 280.4 651 63.4
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 3.5e-73 280.4 624 67.1
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.0e-72 278.9 626 67.4
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.8e-72 276.9 635 67.2
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.5e-71 275.0 647 66.0
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 4.2e-71 273.5 637 68.1
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 2.1e-70 271.2 638 66.3
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.8e-69 268.1 627 66.5
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.8e-69 268.1 627 66.5
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 1.2e-68 265.4 246 61.8
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 3.7e-67 260.4 635 66.8
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 4.8e-67 260.0 642 65.0
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 7.7e-65 252.7 618 66.5
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 2.5e-63 247.7 644 46.4
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 3.2e-63 247.3 633 65.2
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 9.4e-63 245.7 649 63.3
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 3.6e-62 243.8 636 66.4
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 4.7e-62 243.4 637 64.5
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 6.8e-61 239.6 664 63.9
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 2.0e-57 228.0 661 63.4
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.7e-57 227.6 633 65.6
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 4.5e-57 226.9 628 58.9
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.0e-56 225.7 666 62.9
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 1.0e-56 225.7 635 63.9
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 4.2e-55 220.3 662 62.2
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 7.2e-55 219.5 633 62.7
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 2.8e-54 217.6 647 64.5
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 2.8e-54 217.6 632 63.1
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 8.0e-54 216.1 230 82.6
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 4.0e-53 213.8 654 63.8
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 1.2e-52 212.2 264 49.6
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 2.0e-52 211.5 649 63.8
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 2.8e-51 207.6 650 63.7
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 4.1e-50 203.8 638 62.7
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 4.1e-50 203.8 659 61.6
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 5.0e-48 196.8 647 63.1
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 3.3e-47 194.1 620 64.0
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 3.3e-47 194.1 620 64.0
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 1.5e-44 185.3 622 63.0
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 1.9e-42 178.3 621 63.8
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 5.4e-42 176.8 621 63.6
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 3.5e-41 174.1 657 60.0
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.0e-40 172.6 643 60.2
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 5.0e-40 170.2 629 56.6
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 1.5e-39 168.7 445 78.2
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 8.0e-38 162.9 630 60.6
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 3.2e-34 151.0 629 60.4
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 6.0e-33 146.7 649 57.8
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.1e-31 142.5 256 43.8
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 1.9e-31 141.7 498 53.8
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 5.6e-31 140.2 648 58.5
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 3.6e-30 137.5 647 57.8
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 6.2e-30 136.7 636 59.6
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 4.0e-29 134.0 636 59.4
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 6.4e-27 126.7 644 57.6
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 6.4e-27 126.7 642 58.4
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 1.1e-26 125.9 637 47.6
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 2.7e-25 121.3 652 57.5
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 4.6e-25 120.6 632 57.8
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 6.6e-24 116.7 626 49.5
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 3.3e-23 114.4 643 57.5
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 9.5e-23 112.8 643 52.7
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 9.5e-23 112.8 245 35.1
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 8.1e-22 109.8 91 67.0
Hma1.2p1_0217F.1_g091720 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.2e-20 105.9 143 45.5
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 2.0e-20 105.1 637 33.8
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 3.4e-20 104.4 654 56.0
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 2.9e-19 101.3 634 56.5
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 2.1e-17 95.1 149 45.0
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 4.6e-17 94.0 637 55.9
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 6.0e-17 93.6 227 35.2
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 7.8e-17 93.2 238 35.3
Hma1.2p1_0217F.1_g091680 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.9e-16 90.9 85 63.5
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 3.9e-16 90.9 609 58.0
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 5.1e-16 90.5 243 32.5
Hma1.2p1_0217F.1_g091695 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.1e-16 90.5 79 64.6
Hma1.2p1_0217F.1_g091710 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.1e-16 90.5 79 64.6
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 8.7e-16 89.7 625 56.0
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.9e-15 88.6 164 37.2
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 1.1e-13 82.8 243 31.3
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 9.0e-13 79.7 49 77.6
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 5.8e-12 77.0 646 44.0
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 7.6e-12 76.6 635 44.4
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 1.7e-11 75.5 198 33.3
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 2.2e-11 75.1 251 31.5
Haze_27105 Corylus avellana HOM05D003963 ORTHO05D004558 3.8e-11 74.3 71 63.4
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 6.4e-11 73.6 110 45.5
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 2.4e-10 71.6 206 31.6
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 2.7e-09 68.2 246 32.9
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 7.8e-09 66.6 123 39.0
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 1.1e-07 62.8 220 29.1
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 1.1e-07 62.8 220 29.1
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 1.5e-07 62.4 155 32.9
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 2.5e-07 61.6 145 31.0
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 2.5e-07 61.6 118 41.5
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 2.5e-07 61.6 240 32.1
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 3.3e-07 61.2 232 28.4
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 7.3e-07 60.1 127 37.8
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 1.3e-06 59.3 276 26.1
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 1.6e-06 58.9 72 48.6
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 4.8e-06 57.4 191 30.4
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 4.8e-06 57.4 223 27.8
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 6.2e-06 57.0 210 28.6
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 8.1e-06 56.6 143 29.4


User provided reference genes

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