Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc0.102 Carica papaya HOM05D004956 ORTHO05D006284 2.5e-165 585.5 315 100.0
Manes.09G118300 Manihot esculenta HOM05D004956 ORTHO05D006284 9.9e-82 307.8 319 57.7
CiPaw.09G221700 Carya illinoinensis HOM05D004956 ORTHO05D006284 9.2e-80 301.2 303 57.8
Cfa017027 Carpinus fangiana HOM05D004956 ORTHO05D006284 1.0e-78 297.7 303 57.4
Haze_21179 Corylus avellana HOM05D004956 ORTHO05D006284 8.7e-78 294.7 304 57.6
Manes.08G170900 Manihot esculenta HOM05D004956 ORTHO05D006284 1.1e-77 294.3 308 54.5
TAR633G0630 Trochodendron aralioides HOM05D004956 ORTHO05D006284 7.3e-77 291.6 290 57.2
Atru.chr8.110 Acer truncatum HOM05D004956 ORTHO05D006284 1.6e-76 290.4 304 57.9
Duzib268G1093 Durio zibethinus HOM05D004956 ORTHO05D006284 4.4e-74 282.3 304 58.6
Dinv25347 Davidia involucrata HOM05D004956 ORTHO05D006284 5.8e-74 282.0 308 55.5
TWI77G0812 Tripterygium wilfordii HOM05D004956 ORTHO05D006284 5.8e-74 282.0 310 53.9
CANSAT56G1492 Cannabis sativa HOM05D004956 ORTHO05D006284 7.6e-74 281.6 306 56.9
Prupe.6G294000 Prunus persica HOM05D004956 ORTHO05D006284 2.9e-73 279.6 303 56.1
Eucgr.K01286 Eucalyptus grandis HOM05D004956 ORTHO05D006284 2.4e-72 276.6 315 53.0
TWI53G0108 Tripterygium wilfordii HOM05D004956 ORTHO05D006284 7.1e-72 275.0 310 55.2
Dinv16973 Davidia involucrata HOM05D004956 ORTHO05D006284 9.3e-72 274.6 308 55.2
RcHm_v2.0_Chr3g0460431 Rosa chinensis HOM05D004956 ORTHO05D006284 2.7e-71 273.1 306 54.6
Sabra06G0084700 Salix brachista HOM05D004956 ORTHO05D006284 4.6e-71 272.3 309 55.7
Oeu026947.1 Olea europaea HOM05D004956 ORTHO05D006284 6.0e-71 271.9 302 54.3
QL07p032047 Quercus lobata HOM05D004956 ORTHO05D006284 1.0e-70 271.2 309 55.0
Sabra04G0153800 Salix brachista HOM05D004956 ORTHO05D006284 8.7e-70 268.1 306 52.6
FAN02G3876 Fragaria x ananassa HOM05D004956 ORTHO05D006284 5.6e-69 265.4 320 53.1
Nn5g26844 Nelumbo nucifera HOM05D004956 ORTHO05D006284 9.6e-69 264.6 311 52.4
Nn2g10294 Nelumbo nucifera HOM05D004956 ORTHO05D006284 2.1e-68 263.5 310 51.0
arahy.Tifrunner.gnm1.ann1.J3KH6W Arachis hypogaea HOM05D004956 ORTHO05D006284 2.8e-68 263.1 288 54.5
CAN.G120.2 Capsicum annuum HOM05D004956 ORTHO05D006284 3.6e-68 262.7 284 56.3
Gohir.D10G115200 Gossypium hirsutum HOM05D004956 ORTHO05D006284 3.6e-68 262.7 306 54.9
FAN09G4599 Fragaria x ananassa HOM05D004956 ORTHO05D006284 6.2e-68 261.9 305 53.8
Actinidia11507 Actinidia chinensis HOM05D004956 ORTHO05D006284 1.1e-67 261.2 329 52.9
CSS0023237 Camellia sinensis var. sinensis HOM05D004956 ORTHO05D006284 1.1e-67 261.2 295 53.2
FAN05G3806 Fragaria x ananassa HOM05D004956 ORTHO05D006284 1.1e-67 261.2 305 53.8
Gorai.011G126900 Gossypium raimondii HOM05D004956 ORTHO05D006284 1.4e-67 260.8 303 54.5
PSO384G1710 Papaver somniferum HOM05D004956 ORTHO05D006284 1.8e-67 260.4 272 58.5
Migut.J00034 Erythranthe guttata HOM05D004956 ORTHO05D006284 4.0e-67 259.2 303 51.5
Lj2A58T94 Lonicera japonica HOM05D004956 ORTHO05D006284 1.5e-66 257.3 209 66.0
ECA236G0648 Erigeron canadensis HOM05D004956 ORTHO05D006284 2.6e-66 256.5 303 52.8
Solyc09g015650.4 Solanum lycopersicum HOM05D004956 ORTHO05D006284 2.6e-66 256.5 231 60.2
MBI15_g01605_MAGBIO Magnolia biondii HOM05D004956 ORTHO05D006284 7.6e-66 255.0 275 55.3
Nitab4.5_0005145g0010 Nicotiana tabacum HOM05D004956 ORTHO05D006284 7.6e-66 255.0 295 53.9
MSTRG.18940 Avicennia marina HOM05D004956 ORTHO05D006284 3.8e-65 252.7 297 51.9
Peaxi162Scf00732g00258 Petunia axillaris HOM05D004956 ORTHO05D006284 8.4e-65 251.5 271 54.2
Gohir.A10G151100 Gossypium hirsutum HOM05D004956 ORTHO05D006284 1.1e-64 251.1 303 53.5
Ciclev10012212m.g Citrus clementina HOM05D004956 ORTHO05D006284 1.9e-64 250.4 291 53.6
arahy.Tifrunner.gnm1.ann1.GGR1PK Arachis hypogaea HOM05D004956 ORTHO05D006284 4.2e-64 249.2 279 53.8
SalBow5G3051 Salvia bowleyana HOM05D004956 ORTHO05D006284 4.2e-64 249.2 304 50.0
Medtr7g073340 Medicago truncatula HOM05D004956 ORTHO05D006284 5.4e-64 248.8 214 64.5
Psat3g119400 Pisum sativum HOM05D004956 ORTHO05D006284 5.4e-64 248.8 211 65.9
Rhsim05G0230900 Rhododendron simsii HOM05D004956 ORTHO05D006284 7.1e-64 248.4 332 49.7
PGSC0003DMG400030019 Solanum tuberosum HOM05D004956 ORTHO05D006284 2.1e-63 246.9 218 62.8
THA.LOC104823353 Tarenaya hassleriana HOM05D004956 ORTHO05D006284 2.3e-62 243.4 303 49.8
Cc06_g00390 Coffea canephora HOM05D004956 ORTHO05D006284 3.0e-62 243.0 251 57.0
MELO3C025223.2 Cucumis melo HOM05D004956 ORTHO05D006284 8.7e-62 241.5 285 49.1
Glyma.18G213500 Glycine max HOM05D004956 ORTHO05D006284 8.7e-62 241.5 289 51.2
AUR62029770 Chenopodium quinoa HOM05D004956 ORTHO05D006284 1.1e-61 241.1 308 50.0
Lsat_1_v5_gn_8_110501 Lactuca sativa HOM05D004956 ORTHO05D006284 1.1e-61 241.1 306 50.3
Gohir.A02G003100 Gossypium hirsutum HOM05D004956 ORTHO05D006284 2.5e-61 240.0 308 50.6
Sc20g0007000 Simmondsia chinensis HOM05D004956 ORTHO05D006284 2.5e-61 240.0 301 48.8
Ca_02264_v3 Cicer arietinum L. HOM05D004956 ORTHO05D002183 4.3e-61 239.2 209 65.1
EL10Ac7g17106 Beta vulgaris HOM05D004956 ORTHO05D006284 9.6e-61 238.0 294 50.0
Thhalv10016889m.g Eutrema salsugineum HOM05D004956 ORTHO05D006284 9.6e-61 238.0 306 51.6
Gorai.005G004000 Gossypium raimondii HOM05D004956 ORTHO05D006284 1.3e-60 237.7 306 49.7
Phvul.008G082300 Phaseolus vulgaris HOM05D004956 ORTHO05D006284 1.6e-60 237.3 212 60.4
TPR.G14118 Trifolium pratense HOM05D004956 ORTHO05D006284 1.6e-60 237.3 208 63.5
Potri.006G108700 Populus trichocarpa HOM05D004956 ORTHO05D006284 2.8e-60 236.5 219 58.9
Sp4g20880 Schrenkiella parvula HOM05D004956 ORTHO05D006284 4.8e-60 235.7 314 51.0
TAR267G0003 Trochodendron aralioides HOM05D004956 ORTHO05D006284 8.1e-60 235.0 272 52.6
Lalb_Chr03g0043881 Lupinus albus HOM05D004956 ORTHO05D006284 1.4e-59 234.2 211 57.3
Lalb_Chr19g0123941 Lupinus albus HOM05D004956 ORTHO05D006284 1.4e-59 234.2 205 60.5
PSO339G2830 Papaver somniferum HOM05D004956 ORTHO05D006284 1.8e-59 233.8 272 54.4
AT2G38550 Arabidopsis thaliana HOM05D004956 ORTHO05D006284 2.4e-59 233.4 309 50.8
Carub.0004s2054 Capsella rubella HOM05D004956 ORTHO05D006284 3.1e-59 233.0 302 49.7
HanXRQChr06g0181041 Helianthus annuus HOM05D004956 ORTHO05D006284 3.1e-59 233.0 303 49.5
HanXRQChr16g0510491 Helianthus annuus HOM05D004956 ORTHO05D006284 6.9e-59 231.9 301 50.2
CARHR133230 Cardamine hirsuta HOM05D004956 ORTHO05D006284 9.0e-59 231.5 303 50.5
Duzib151G0737 Durio zibethinus HOM05D004956 ORTHO05D006284 1.5e-58 230.7 304 51.0
Hund03697 Selenicereus undatus HOM05D004956 ORTHO05D006284 1.5e-58 230.7 287 49.8
THA.LOC104806171 Tarenaya hassleriana HOM05D004956 ORTHO05D006284 1.5e-58 230.7 303 48.2
Thecc.04G151200 Theobroma cacao HOM05D004956 ORTHO05D006284 2.0e-58 230.3 310 49.4
MD12G1188700 Malus domestica HOM05D004956 ORTHO05D006284 9.9e-58 228.0 305 50.8
Lj1g0007503 Lotus japonicus HOM05D004956 ORTHO05D006284 1.7e-57 227.3 285 50.2
BcaC02g12007 Brassica carinata HOM05D004956 ORTHO05D006284 2.2e-57 226.9 306 50.3
C04p08990 Brassica napus HOM05D004956 ORTHO05D006284 2.2e-57 226.9 306 50.3
BolC4t22488H Brassica oleracea HOM05D004956 ORTHO05D006284 2.2e-57 226.9 306 50.3
Nitab4.5_0000048g0050 Nicotiana tabacum HOM05D004956 ORTHO05D006284 3.8e-57 226.1 323 48.0
Sc07g0005940 Simmondsia chinensis HOM05D004956 ORTHO05D006284 3.8e-57 226.1 189 62.4
AL4G35830 Arabidopsis lyrata HOM05D004956 ORTHO05D006284 6.4e-57 225.3 310 49.4
A05p07510 Brassica napus HOM05D004956 ORTHO05D006284 6.4e-57 225.3 306 50.7
BraA05t19716Z Brassica rapa HOM05D004956 ORTHO05D006284 6.4e-57 225.3 306 50.7
Sopen09g009840 Solanum pennellii HOM05D004956 ORTHO05D006284 6.4e-57 225.3 230 54.8
GSVIVG01030178001 Vitis vinifera HOM05D004956 ORTHO05D006284 8.4e-57 224.9 315 47.6
BcaB02g09182 Brassica carinata HOM05D004956 ORTHO05D006284 3.2e-56 223.0 310 48.4
Hma1.2p1_0174F.1_g076810 Hydrangea macrophylla HOM05D004956 ORTHO05D006284 3.2e-56 223.0 280 50.0
VMungo1383G1190 Vigna mungo HOM05D004956 ORTHO05D006284 5.5e-56 222.2 278 48.9
Ah.15g089990 Amaranthus hybridus HOM05D004956 ORTHO05D006284 1.6e-55 220.7 290 46.9
ClCG04G006350 Citrullus lanatus HOM05D004956 ORTHO05D006284 2.7e-55 219.9 283 47.0
HPP92_018086 Vanilla planifolia HOM05D004956 ORTHO05D006284 3.5e-55 219.5 231 50.6
Sed0014033 Sechium edule HOM05D004956 ORTHO05D006284 1.0e-54 218.0 280 47.1
FvH4_6g09820 Fragaria vesca HOM05D004956 ORTHO05D006284 1.3e-54 217.6 307 47.2
FAN14G5820 Fragaria x ananassa HOM05D004956 ORTHO05D006284 1.8e-54 217.2 307 47.2
Sed0012391 Sechium edule HOM05D004956 ORTHO05D006284 2.3e-54 216.9 288 46.5
AUR62006421 Chenopodium quinoa HOM05D004956 ORTHO05D006284 5.1e-54 215.7 196 60.7
Gohir.D02G003500 Gossypium hirsutum HOM05D004956 ORTHO05D006284 5.1e-54 215.7 305 47.5
Aa31LG5G23380 Aethionema arabicum HOM05D004956 ORTHO05D006284 7.4e-53 211.8 311 45.7
SGA_v2.0_scaffold85G26605 Striga asiatica HOM05D004956 ORTHO05D006284 2.8e-52 209.9 309 46.9
Potri.016G137200 Populus trichocarpa HOM05D004956 ORTHO05D006284 6.2e-52 208.8 288 47.2
Glyma.09G274500 Glycine max HOM05D004956 ORTHO05D006284 1.5e-50 204.1 289 47.1
MD04G1175000 Malus domestica HOM05D004956 ORTHO05D006284 1.5e-50 204.1 302 46.4
unitig_749.g14093 Utricularia gibba HOM05D004956 ORTHO05D006284 2.6e-50 203.4 207 53.1
Ah.08g209270 Amaranthus hybridus HOM05D004956 ORTHO05D006284 3.4e-50 203.0 196 57.7
SalBow5G5006 Salvia bowleyana HOM05D004956 ORTHO05D006284 4.5e-50 202.6 304 43.1
CsaV3_4G027190 Cucumis sativus L. HOM05D004956 ORTHO05D006284 1.0e-49 201.4 285 43.2
PSO017G3746 Papaver somniferum HOM05D004956 ORTHO05D006284 2.9e-49 199.9 257 48.6
Aqoxy1G01266 Aquilegia oxysepala HOM05D004956 ORTHO05D006284 1.9e-48 197.2 226 51.8
PSO170G1670 Papaver somniferum HOM05D004956 ORTHO05D006284 2.5e-48 196.8 188 58.5
ATR1127G197 Amborella trichopoda HOM05D004956 ORTHO05D006284 7.1e-48 195.3 225 48.9
DCAR_015337 Daucus carota HOM05D004956 ORTHO05D006284 9.3e-48 194.9 206 54.4
vmacro20371 Vaccinium macrocarpon HOM05D004956 ORTHO05D006284 9.3e-48 194.9 302 46.4
Sopen11g017880 Solanum pennellii HOM05D004956 ORTHO05D006284 3.3e-45 186.4 197 53.3
Zm00001eb149540 Zea mays HOM05D004956 ORTHO05D006284 5.7e-45 185.7 290 42.8
Glyma.07G108500 Glycine max HOM05D004956 ORTHO05D006284 7.4e-45 185.3 224 49.1
DCAR_023974 Daucus carota HOM05D004956 ORTHO05D006284 2.2e-44 183.7 196 52.6
Sopen03g003180 Solanum pennellii HOM05D004956 ORTHO05D006284 2.2e-44 183.7 188 55.9
THA.LOC104806644 Tarenaya hassleriana HOM05D004956 ORTHO05D006284 2.8e-44 183.3 178 57.3
Os01g0821700 Oryza sativa ssp. japonica HOM05D004956 ORTHO05D006284 5.3e-43 179.1 223 46.6
Zm00001eb368840 Zea mays HOM05D004956 ORTHO05D006284 1.3e-41 174.5 213 47.4
CDE07G0884 Ceratophyllum demersum HOM05D004956 ORTHO05D006284 2.5e-40 170.2 207 48.3
CSS0017588 Camellia sinensis var. sinensis HOM05D004956 ORTHO05D006284 1.6e-39 167.5 146 65.8
CSS0023047 Camellia sinensis var. sinensis HOM05D004956 ORTHO05D006284 1.6e-39 167.5 146 65.8
TAR636G3595 Trochodendron aralioides HOM05D004956 ORTHO05D006284 2.7e-39 166.8 145 64.8
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 7.9e-39 165.2 238 44.1
Lj3A941G100 Lonicera japonica HOM05D004956 ORTHO05D006284 8.2e-36 155.2 197 49.7
CDE06G1356 Ceratophyllum demersum HOM05D004956 ORTHO05D006284 5.0e-33 146.0 283 38.9
Mapoly0006s0095 Marchantia polymorpha HOM05D004956 ORTHO05D006284 8.5e-33 145.2 231 40.7
TPR.G14115 Trifolium pratense HOM05D004956 ORTHO05D006284 4.4e-29 132.9 138 56.5
COL.COLO4_09227 Corchorus olitorius HOM05D004956 ORTHO05D006284 1.3e-28 131.3 222 44.1
SEGI_23067 Sequoiadendron giganteum HOM05D004956 ORTHO05D006284 1.0e-22 111.7 193 39.9
Actinidia29031 Actinidia chinensis HOM05D004956 ORTHO05D006284 1.5e-21 107.8 274 34.7
Pp3c18_6510 Physcomitrium patens HOM05D004956 ORTHO05D006284 3.3e-21 106.7 146 44.5
AagrBONN_evm.TU.Sc2ySwM_362.797 Anthoceros agrestis HOM05D004956 ORTHO05D006284 5.7e-21 105.9 304 33.2
Pp3c21_18160 Physcomitrium patens HOM05D004956 ORTHO05D005235 5.7e-21 105.9 156 43.6
SMO356G0722 Selaginella moellendorffii HOM05D004956 ORTHO05D006284 1.7e-20 104.4 185 40.0
CBR_g47126 Chara braunii HOM05D004956 ORTHO05D006284 1.6e-18 97.8 230 35.2
HPP92_007533 Vanilla planifolia HOM05D004956 ORTHO05D006284 3.2e-16 90.1 155 40.0
SMO285G0004 Selaginella moellendorffii HOM05D004956 ORTHO05D005235 3.3e-13 80.1 143 39.2
Pp3c19_13340 Physcomitrium patens HOM05D004956 ORTHO05D006284 4.4e-13 79.7 146 34.9
BcaC07g40061 Brassica carinata HOM05D004475 ORTHO05D005235 4.7e-07 59.7 127 35.4
Sp5g05320 Schrenkiella parvula HOM05D004475 ORTHO05D005235 2.3e-06 57.4 131 34.4
PGR004G0119 Punica granatum HOM05D004475 ORTHO05D005235 4.0e-06 56.6 85 36.5


User provided reference genes

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