Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 1.4e-37 159.5 101 100.0
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.4e-37 159.5 101 100.0
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 6.5e-35 150.6 101 70.3
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 6.5e-35 150.6 101 70.3
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 6.5e-35 150.6 101 70.3
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 6.5e-35 150.6 101 70.3
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 6.5e-35 150.6 101 70.3
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 6.5e-35 150.6 101 70.3
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 2.7e-33 145.2 101 93.1
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 4.6e-33 144.4 98 71.4
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 1.3e-32 142.9 98 94.9
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 1.8e-32 142.5 96 70.8
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 2.3e-32 142.1 97 72.2
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 3.0e-32 141.7 98 67.3
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 3.0e-32 141.7 97 73.2
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.0e-32 141.7 96 83.3
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 3.9e-32 141.4 101 69.3
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 6.7e-32 140.6 97 70.1
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 6.7e-32 140.6 98 68.4
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 6.7e-32 140.6 98 68.4
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 6.7e-32 140.6 96 69.8
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 8.7e-32 140.2 101 68.3
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 1.1e-31 139.8 98 68.4
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 1.5e-31 139.4 97 68.0
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 1.5e-31 139.4 97 70.1
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 2.5e-31 138.7 98 67.3
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.5e-31 138.7 98 68.4
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 2.5e-31 138.7 101 91.1
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 3.3e-31 138.3 95 71.6
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 3.3e-31 138.3 101 65.3
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 5.7e-31 137.5 97 70.1
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 7.4e-31 137.1 98 90.8
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 7.4e-31 137.1 98 90.8
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 7.4e-31 137.1 101 90.1
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 9.7e-31 136.7 98 84.7
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.3e-30 136.3 97 90.7
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.3e-30 136.3 97 90.7
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 1.3e-30 136.3 97 89.7
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 1.6e-30 136.0 97 69.1
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.2e-30 135.6 96 67.7
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 2.2e-30 135.6 97 88.7
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 2.8e-30 135.2 96 91.7
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 2.8e-30 135.2 98 66.3
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 4.8e-30 134.4 101 89.1
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 8.2e-30 133.7 97 90.7
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 8.2e-30 133.7 97 67.0
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 1.1e-29 133.3 95 87.4
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 1.4e-29 132.9 95 68.4
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.4e-29 132.9 95 68.4
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.4e-29 132.9 95 68.4
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 1.4e-29 132.9 95 68.4
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 1.4e-29 132.9 97 66.0
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 1.8e-29 132.5 95 65.3
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 1.8e-29 132.5 95 75.8
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.4e-29 132.1 98 63.3
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 3.1e-29 131.7 95 65.3
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 3.1e-29 131.7 96 64.6
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 3.1e-29 131.7 97 89.7
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 4.1e-29 131.3 95 67.4
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 4.1e-29 131.3 95 67.4
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 4.1e-29 131.3 95 67.4
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 4.1e-29 131.3 95 67.4
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 4.1e-29 131.3 95 66.3
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 4.1e-29 131.3 96 90.6
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 4.1e-29 131.3 96 90.6
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 5.3e-29 131.0 97 64.9
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 5.3e-29 131.0 96 90.6
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 5.3e-29 131.0 94 74.5
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 5.3e-29 131.0 96 64.6
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 5.3e-29 131.0 96 91.7
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 5.3e-29 131.0 95 92.6
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 5.3e-29 131.0 95 67.4
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 5.3e-29 131.0 96 65.6
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 6.9e-29 130.6 95 66.3
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 9.0e-29 130.2 96 65.6
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 9.0e-29 130.2 96 65.6
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 9.0e-29 130.2 97 64.9
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 1.2e-28 129.8 95 70.5
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 1.2e-28 129.8 94 67.0
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 1.2e-28 129.8 95 70.5
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 1.2e-28 129.8 96 64.6
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 1.2e-28 129.8 96 64.6
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.5e-28 129.4 95 66.3
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 1.5e-28 129.4 96 90.6
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 1.5e-28 129.4 96 64.6
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.5e-28 129.4 96 64.6
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 1.5e-28 129.4 95 85.3
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 1.5e-28 129.4 95 67.4
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 2.0e-28 129.0 96 88.5
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.0e-28 129.0 96 65.6
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 2.0e-28 129.0 95 64.2
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 2.6e-28 128.6 95 66.3
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 2.6e-28 128.6 97 84.5
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 2.6e-28 128.6 97 84.5
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 3.4e-28 128.3 95 66.3
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 3.4e-28 128.3 97 60.8
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 4.5e-28 127.9 97 61.9
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.5e-28 127.9 96 89.6
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 5.9e-28 127.5 96 63.5
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 5.9e-28 127.5 99 62.6
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 1.0e-27 126.7 95 90.5
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 1.0e-27 126.7 95 66.3
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.3e-27 126.3 96 63.5
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.7e-27 125.9 96 64.6
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.7e-27 125.9 95 64.2
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.7e-27 125.9 97 60.8
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.2e-27 125.6 96 88.5
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 3.8e-27 124.8 95 90.5
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 3.8e-27 124.8 96 60.4
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 6.5e-27 124.0 96 62.5
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 6.5e-27 124.0 97 60.8
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 8.5e-27 123.6 101 59.4
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 8.5e-27 123.6 96 63.5
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 1.4e-26 122.9 98 61.2
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 2.5e-26 122.1 97 61.9
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 3.2e-26 121.7 97 61.9
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 5.5e-26 120.9 95 85.3
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 5.5e-26 120.9 95 85.3
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 7.2e-26 120.6 95 85.3
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.6e-25 118.2 95 67.4
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.6e-25 118.2 95 67.4
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 1.0e-24 116.7 95 76.8
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.8e-22 108.6 95 53.7
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.1e-21 106.7 95 53.7
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 2.4e-21 105.5 84 84.5
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 9.1e-21 103.6 95 53.7
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 3.4e-20 101.7 101 78.2
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.4e-18 96.3 97 48.5
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 3.1e-13 78.6 35 100.0
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 2.6e-12 75.5 35 94.3
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 1.6e-09 66.2 35 80.0
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.6e-09 66.2 36 86.1


User provided reference genes

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