Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 2.6e-39 164.9 80 100.0
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 1.3e-38 162.5 80 98.8
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.5e-31 139.0 80 83.8
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.5e-31 139.0 80 83.8
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 4.5e-31 137.5 80 81.2
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 4.5e-31 137.5 81 84.0
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 4.5e-31 137.5 81 84.0
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 5.9e-31 137.1 80 81.2
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 7.7e-31 136.7 80 82.5
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.0e-30 136.3 80 81.2
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 2.2e-30 135.2 80 82.5
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 2.9e-30 134.8 80 80.0
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 3.8e-30 134.4 80 81.2
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 3.8e-30 134.4 80 78.8
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 3.8e-30 134.4 80 81.2
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 5.0e-30 134.0 80 78.8
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 5.0e-30 134.0 80 81.2
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 5.0e-30 134.0 80 81.2
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 6.5e-30 133.7 80 78.8
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 6.5e-30 133.7 80 78.8
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 8.5e-30 133.3 80 80.0
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 8.5e-30 133.3 80 80.0
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.1e-29 132.9 81 81.5
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.4e-29 132.5 80 78.8
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.4e-29 132.5 80 77.5
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.9e-29 132.1 80 78.8
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.9e-29 132.1 81 79.0
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.9e-29 132.1 80 80.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 2.5e-29 131.7 81 81.5
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.5e-29 131.7 80 82.5
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 3.2e-29 131.3 81 80.2
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 3.2e-29 131.3 81 80.2
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 3.2e-29 131.3 81 80.2
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.2e-29 131.3 81 80.2
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 4.2e-29 131.0 80 76.2
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.2e-29 131.0 81 79.0
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.2e-29 131.0 81 79.0
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 5.5e-29 130.6 80 76.2
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.5e-29 130.6 81 77.8
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 7.2e-29 130.2 80 73.8
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 9.4e-29 129.8 81 80.2
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 9.4e-29 129.8 80 78.8
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 9.4e-29 129.8 81 79.0
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.2e-28 129.4 82 76.8
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.2e-28 129.4 82 76.8
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.2e-28 129.4 80 76.2
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.6e-28 129.0 80 82.5
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.1e-28 128.6 81 77.8
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 3.6e-28 127.9 81 75.3
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 3.6e-28 127.9 80 76.2
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 3.6e-28 127.9 80 76.2
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 4.6e-28 127.5 80 76.2
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 4.6e-28 127.5 80 81.2
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.6e-28 127.5 81 77.8
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 6.1e-28 127.1 80 76.2
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 6.1e-28 127.1 81 76.5
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 7.9e-28 126.7 81 77.8
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 7.9e-28 126.7 80 75.0
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.0e-27 126.3 82 75.6
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.0e-27 126.3 80 71.2
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.4e-27 125.9 81 77.8
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.8e-27 125.6 81 76.5
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 3.0e-27 124.8 80 73.8
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 3.0e-27 124.8 83 72.3
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 3.0e-27 124.8 81 76.5
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 3.0e-27 124.8 81 76.5
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 3.9e-27 124.4 81 76.5
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 3.9e-27 124.4 80 76.2
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.9e-27 124.4 81 76.5
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 6.7e-27 123.6 80 71.2
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 6.7e-27 123.6 81 74.1
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 1.1e-26 122.9 81 75.3
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.5e-26 122.5 81 75.3
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 1.5e-26 122.5 80 75.0
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.5e-26 122.5 80 75.0
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.5e-26 122.5 80 75.0
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.5e-26 122.5 80 75.0
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.5e-26 122.5 80 75.0
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 2.0e-26 122.1 81 75.3
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 2.5e-26 121.7 81 75.3
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 2.5e-26 121.7 81 75.3
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 2.5e-26 121.7 81 75.3
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 3.3e-26 121.3 81 72.8
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 4.3e-26 120.9 82 72.0
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 4.3e-26 120.9 81 72.8
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 4.3e-26 120.9 81 72.8
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 5.7e-26 120.6 81 74.1
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 7.4e-26 120.2 81 74.1
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 7.4e-26 120.2 81 74.1
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 7.4e-26 120.2 81 74.1
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.3e-25 119.4 80 71.2
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 2.2e-25 118.6 81 74.1
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 2.8e-25 118.2 80 75.0
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 2.8e-25 118.2 80 71.2
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 8.2e-25 116.7 81 69.1
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.1e-24 116.3 80 68.8
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 1.8e-24 115.5 79 73.4
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.8e-24 115.5 81 69.1
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.8e-24 115.5 81 69.1
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.0e-23 112.1 81 65.4
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 2.0e-23 112.1 80 71.2
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 2.6e-23 111.7 80 70.0
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 3.4e-23 111.3 80 71.2
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.3e-22 109.4 80 68.8
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.7e-22 109.0 80 68.8
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.7e-22 109.0 80 68.8
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.2e-22 108.6 80 70.0
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.2e-22 108.6 80 68.8
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 5.0e-22 107.5 80 67.5
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 6.5e-22 107.1 80 70.0
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 6.5e-22 107.1 67 77.6
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 8.5e-22 106.7 80 68.8
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.9e-21 105.5 80 67.5
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 4.2e-21 104.4 80 63.8
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 5.5e-21 104.0 81 60.5
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.2e-20 102.8 69 73.9
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.7e-20 101.7 79 67.1
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 2.7e-20 101.7 80 60.0
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 6.1e-20 100.5 80 65.0
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 7.9e-20 100.1 72 72.2
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.8e-19 99.0 81 61.7
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.6e-18 95.1 82 61.0
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 2.6e-18 95.1 82 61.0
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.3e-18 94.7 81 65.4
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.3e-18 94.7 81 65.4
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 9.7e-18 93.2 82 63.4
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.7e-17 92.4 82 59.8
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.7e-17 92.4 83 57.8
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.7e-17 92.4 85 55.3
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.8e-17 91.7 80 52.5
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 6.3e-17 90.5 85 56.5
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 1.4e-16 89.4 65 69.2
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.4e-16 89.4 82 61.0
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 2.4e-16 88.6 88 56.8
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 2.4e-16 88.6 82 57.3
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 4.1e-16 87.8 91 52.7
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 4.1e-16 87.8 83 57.8
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 7.0e-16 87.0 79 57.0
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 7.0e-16 87.0 82 57.3
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.2e-15 86.3 52 78.8
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.7e-15 83.6 61 68.9
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.0e-14 83.2 83 51.8
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 3.2e-13 78.2 68 55.9
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 4.0e-11 71.2 76 50.0
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 5.2e-11 70.9 83 47.0
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 3.7e-09 64.7 77 45.5
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 3.7e-09 64.7 73 45.2
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.1e-08 63.2 36 86.1
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 1.1e-08 63.2 77 50.6
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.8e-08 62.4 37 83.8
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 7.0e-08 60.5 65 44.6
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 3.5e-07 58.2 77 40.3
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.5e-07 57.8 41 65.9
DCAR_000724 Daucus carota HOM05D004041 ORTHO05D004564 1.3e-06 56.2 61 52.5
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 1.7e-06 55.8 30 90.0
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 2.9e-06 55.1 49 55.1
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 3.8e-06 54.7 29 89.7
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.0e-06 54.3 32 78.1


User provided reference genes

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