Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 2.2e-36 155.2 84 100.0
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 2.2e-36 155.2 84 100.0
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 5.0e-33 144.1 84 90.5
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.9e-32 142.1 84 89.3
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.9e-32 142.1 84 88.1
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.3e-32 141.4 84 89.3
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.3e-32 141.4 84 88.1
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 4.3e-32 141.0 84 86.9
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 4.3e-32 141.0 84 88.1
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 5.6e-32 140.6 84 88.1
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 5.6e-32 140.6 84 88.1
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 5.6e-32 140.6 84 88.1
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 7.3e-32 140.2 84 88.1
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 7.3e-32 140.2 84 86.9
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 7.3e-32 140.2 84 86.9
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 9.5e-32 139.8 84 88.1
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 9.5e-32 139.8 84 88.1
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.2e-31 139.4 84 86.9
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.2e-31 139.4 84 86.9
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 2.1e-31 138.7 84 86.9
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.8e-31 138.3 84 85.7
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 2.8e-31 138.3 84 86.9
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 3.6e-31 137.9 84 85.7
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 3.6e-31 137.9 84 84.5
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 3.6e-31 137.9 84 84.5
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 4.7e-31 137.5 84 84.5
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 6.2e-31 137.1 84 83.3
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 6.2e-31 137.1 88 83.0
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 8.0e-31 136.7 84 84.5
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 8.0e-31 136.7 84 84.5
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 8.0e-31 136.7 84 84.5
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 8.0e-31 136.7 84 84.5
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 8.0e-31 136.7 84 84.5
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 8.0e-31 136.7 84 83.3
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 8.0e-31 136.7 84 83.3
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.1e-30 136.3 84 83.3
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.1e-30 136.3 84 83.3
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 2.3e-30 135.2 84 83.3
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 3.1e-30 134.8 85 85.9
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 3.1e-30 134.8 84 82.1
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 3.1e-30 134.8 84 82.1
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 4.0e-30 134.4 84 83.3
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 4.0e-30 134.4 84 83.3
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 4.0e-30 134.4 84 83.3
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 4.0e-30 134.4 84 83.3
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 4.0e-30 134.4 84 83.3
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 4.0e-30 134.4 84 83.3
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 4.0e-30 134.4 84 82.1
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 4.0e-30 134.4 84 85.7
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 4.0e-30 134.4 84 84.5
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 5.2e-30 134.0 84 81.0
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 6.8e-30 133.7 89 84.3
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 6.8e-30 133.7 85 83.5
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.8e-30 133.7 82 85.4
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 8.9e-30 133.3 85 84.7
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 8.9e-30 133.3 84 81.0
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 8.9e-30 133.3 84 81.0
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 8.9e-30 133.3 84 81.0
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 2.0e-29 132.1 84 79.8
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.6e-29 131.7 99 74.7
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 2.6e-29 131.7 84 81.0
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 4.4e-29 131.0 84 81.0
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.8e-29 130.6 84 81.0
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 5.8e-29 130.6 81 84.0
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 3.7e-28 127.9 84 79.8
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 4.9e-28 127.5 84 79.8
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 4.9e-28 127.5 84 79.8
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 6.4e-28 127.1 84 79.8
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.4e-28 127.1 85 81.2
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.4e-28 127.1 85 81.2
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.4e-28 127.1 85 81.2
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.4e-28 127.1 85 81.2
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 8.3e-28 126.7 84 81.0
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 8.3e-28 126.7 84 81.0
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.1e-27 126.3 84 79.8
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 1.4e-27 125.9 77 84.4
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.4e-27 125.9 85 78.8
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.9e-27 125.6 84 76.2
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.4e-27 125.2 84 81.0
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.4e-27 125.2 85 80.0
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 3.2e-27 124.8 84 76.2
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 3.2e-27 124.8 84 75.0
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 5.4e-27 124.0 86 79.1
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 7.0e-27 123.6 77 83.1
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.6e-26 122.5 78 79.5
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.6e-26 122.5 76 82.9
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 2.0e-26 122.1 84 73.8
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.0e-26 122.1 84 79.8
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 2.7e-26 121.7 84 75.0
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 7.8e-26 120.2 83 75.9
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.3e-25 119.4 84 75.0
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 1.7e-25 119.0 84 75.0
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 2.3e-25 118.6 88 72.7
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 2.3e-25 118.6 84 75.0
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.0e-25 118.2 84 75.0
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.0e-25 117.5 84 76.2
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 8.6e-25 116.7 85 72.9
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.5e-24 115.9 84 77.4
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.5e-24 115.9 84 69.0
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.9e-24 115.5 85 76.5
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.9e-24 115.5 85 76.5
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 5.6e-24 114.0 82 72.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 7.3e-24 113.6 85 75.3
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 9.5e-24 113.2 82 72.0
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.6e-23 112.5 107 60.7
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.6e-23 112.5 82 70.7
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 2.1e-23 112.1 80 68.8
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.6e-23 111.3 84 71.4
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 1.4e-22 109.4 69 78.3
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 7.5e-21 103.6 84 70.2
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 7.5e-21 103.6 84 69.0
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 9.9e-21 103.2 85 64.7
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.1e-17 90.9 70 64.3
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.1e-17 90.9 70 64.3
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 2.5e-16 88.6 80 63.8
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.4e-14 82.8 82 52.4
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 3.1e-14 81.6 84 56.0
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 5.8e-13 77.4 67 62.7
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.3e-12 76.3 80 50.0
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.7e-12 75.9 82 47.6
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 6.4e-12 73.9 43 88.4
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 1.5e-08 62.8 35 91.4
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.3e-08 61.2 60 56.7
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.6e-08 60.8 41 78.0
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.2e-07 59.7 38 78.9
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 2.8e-07 58.5 87 37.9
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 6.2e-07 57.4 82 40.2


User provided reference genes

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