Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c47772.1 Carica papaya HOM05D000375 ORTHO05D000240 1.3e-35 152.5 77 100.0
Gohir.A12G240900 Gossypium hirsutum HOM05D000375 ORTHO05D000240 1.0e-16 89.7 76 65.8
Gorai.008G259500 Gossypium raimondii HOM05D000375 ORTHO05D000240 1.0e-16 89.7 76 65.8
COL.COLO4_10813 Corchorus olitorius HOM05D000375 ORTHO05D000240 1.9e-15 85.5 64 64.1
Duzib205G0789 Durio zibethinus HOM05D000375 ORTHO05D000240 3.3e-15 84.7 76 63.2
Gohir.D12G242200 Gossypium hirsutum HOM05D000375 ORTHO05D000240 6.3e-14 80.5 76 61.8
Duzib084G1440 Durio zibethinus HOM05D000375 ORTHO05D000240 8.2e-14 80.1 65 66.2
Thecc.03G219200 Theobroma cacao HOM05D000375 ORTHO05D000240 1.1e-13 79.7 76 59.2
Potri.001G082700 Populus trichocarpa HOM05D000375 ORTHO05D000240 6.9e-13 77.0 66 68.2
Sabra01G0059400 Salix brachista HOM05D000375 ORTHO05D000240 3.4e-12 74.7 79 58.2
Actinidia04172 Actinidia chinensis HOM05D000375 ORTHO05D000240 2.2e-11 72.0 75 58.7
Cfa011910 Carpinus fangiana HOM05D000375 ORTHO05D000240 3.8e-11 71.2 81 58.0
CiPaw.06G042100 Carya illinoinensis HOM05D000375 ORTHO05D000240 6.5e-11 70.5 65 60.0
Haze_09188 Corylus avellana HOM05D000375 ORTHO05D000240 6.5e-11 70.5 80 56.2
Lj2A155G28 Lonicera japonica HOM05D000375 ORTHO05D000240 1.4e-10 69.3 66 59.1
Prupe.5G131600 Prunus persica HOM05D000375 ORTHO05D000240 1.9e-10 68.9 77 53.2
Sabra03G0107600 Salix brachista HOM05D000375 ORTHO05D000240 2.5e-10 68.6 68 61.8
Oeu013370.1 Olea europaea HOM05D000375 ORTHO05D000240 3.2e-10 68.2 74 51.4
HanXRQChr03g0085261 Helianthus annuus HOM05D000375 ORTHO05D000240 4.2e-10 67.8 74 55.4
Oeu042840.1 Olea europaea HOM05D000375 ORTHO05D000240 4.2e-10 67.8 74 54.1
Oeu042841.1 Olea europaea HOM05D000375 ORTHO05D000240 4.2e-10 67.8 74 54.1
CSS0002551 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 5.5e-10 67.4 65 60.0
Prupe.2G317500 Prunus persica HOM05D000375 ORTHO05D000240 7.2e-10 67.0 64 54.7
Cpa.g.sc3.145 Carica papaya HOM05D000375 ORTHO05D000240 9.4e-10 66.6 64 59.4
Lsat_1_v5_gn_6_81681 Lactuca sativa HOM05D000375 ORTHO05D000240 9.4e-10 66.6 74 52.7
Nn3g18854 Nelumbo nucifera HOM05D000375 ORTHO05D000240 1.2e-09 66.2 40 72.5
Oeu013369.1 Olea europaea HOM05D000375 ORTHO05D000240 1.6e-09 65.9 65 55.4
CiPaw.11G111100 Carya illinoinensis HOM05D000375 ORTHO05D000240 2.1e-09 65.5 77 51.9
TWI60G1212 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 2.1e-09 65.5 81 51.9
A01p15470 Brassica napus HOM05D000375 ORTHO05D000240 2.7e-09 65.1 61 55.7
CANSAT21G0845 Cannabis sativa HOM05D000375 ORTHO05D000240 2.7e-09 65.1 64 57.8
Ciclev10019828m.g Citrus clementina HOM05D000375 ORTHO05D000240 2.7e-09 65.1 70 55.7
Lsat_1_v5_gn_3_14660 Lactuca sativa HOM05D000375 ORTHO05D000240 2.7e-09 65.1 75 52.0
MD06G1121000 Malus domestica HOM05D000375 ORTHO05D000240 2.7e-09 65.1 65 60.0
Rhsim02G0253100 Rhododendron simsii HOM05D000375 ORTHO05D000240 2.7e-09 65.1 64 60.9
ECA240G3968 Erigeron canadensis HOM05D000375 ORTHO05D000240 3.6e-09 64.7 66 53.0
Haze_00280 Corylus avellana HOM05D000375 ORTHO05D000240 4.6e-09 64.3 65 55.4
Cfa016174 Carpinus fangiana HOM05D000375 ORTHO05D000240 6.1e-09 63.9 65 55.4
GSVIVG01038629001 Vitis vinifera HOM05D000375 ORTHO05D000240 6.1e-09 63.9 66 51.5
Atru.chr9.1853 Acer truncatum HOM05D000375 ORTHO05D000240 7.9e-09 63.5 66 53.0
BcaNung01120 Brassica carinata HOM05D000375 ORTHO05D000240 7.9e-09 63.5 68 54.4
Actinidia22212 Actinidia chinensis HOM05D000375 ORTHO05D000240 1.0e-08 63.2 64 57.8
AL7G29140 Arabidopsis lyrata HOM05D000375 ORTHO05D000240 1.0e-08 63.2 72 56.9
Hund11336 Selenicereus undatus HOM05D000375 ORTHO05D000240 1.0e-08 63.2 38 78.9
Sc01g0010780 Simmondsia chinensis HOM05D000314 ORTHO05D000189 1.0e-08 63.2 68 54.4
DCAR_020360 Daucus carota HOM05D000375 ORTHO05D000240 1.4e-08 62.8 69 52.2
HanXRQChr06g0166741 Helianthus annuus HOM05D000375 ORTHO05D000240 1.4e-08 62.8 74 52.7
Dinv35375 Davidia involucrata HOM05D000375 ORTHO05D000240 1.8e-08 62.4 65 52.3
QL09p007351 Quercus lobata HOM05D000375 ORTHO05D000240 2.3e-08 62.0 64 51.6
vmacro11496 Vaccinium macrocarpon HOM05D000375 ORTHO05D000240 2.3e-08 62.0 64 54.7
Ah.07g204830 Amaranthus hybridus HOM05D000375 ORTHO05D000240 3.9e-08 61.2 81 50.6
Thhalv10025371m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 3.9e-08 61.2 72 52.8
Sp7g22110 Schrenkiella parvula HOM05D000375 ORTHO05D000240 5.1e-08 60.8 65 53.8
AUR62006018 Chenopodium quinoa HOM05D000375 ORTHO05D000240 6.7e-08 60.5 71 53.5
TAR636G1213 Trochodendron aralioides HOM05D000375 ORTHO05D000240 6.7e-08 60.5 65 49.2
EL10Ac5g12410 Beta vulgaris HOM05D000375 ORTHO05D000240 8.8e-08 60.1 71 47.9
BcaC09g50904 Brassica carinata HOM05D000375 ORTHO05D000240 8.8e-08 60.1 63 54.0
C01p19370 Brassica napus HOM05D000375 ORTHO05D000240 8.8e-08 60.1 63 54.0
MD07G1297800 Malus domestica HOM05D000375 ORTHO05D000240 1.1e-07 59.7 79 50.6
Peaxi162Scf00074g00155 Petunia axillaris HOM05D000375 ORTHO05D000240 1.1e-07 59.7 74 50.0
Atru.chr12.2371 Acer truncatum HOM05D000375 ORTHO05D000240 1.5e-07 59.3 64 56.2
Aqoxy7G00974 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 1.5e-07 59.3 81 48.1
A03p55070 Brassica napus HOM05D000375 ORTHO05D000240 1.5e-07 59.3 61 52.5
Nitab4.5_0002720g0070 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.5e-07 59.3 67 52.2
Nitab4.5_0008141g0020 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.5e-07 59.3 67 52.2
BraA03t14567Z Brassica rapa HOM05D000375 ORTHO05D000240 2.0e-07 58.9 63 54.0
CARHR231550 Cardamine hirsuta HOM05D000375 ORTHO05D000240 2.0e-07 58.9 64 54.7
Lalb_Chr23g0271871 Lupinus albus HOM05D000375 ORTHO05D000240 2.0e-07 58.9 62 50.0
PGR042G2639 Punica granatum HOM05D000375 ORTHO05D000240 2.0e-07 58.9 65 50.8
BcaNung06402 Brassica carinata HOM05D000375 ORTHO05D000240 2.6e-07 58.5 63 54.0
Lalb_Chr08g0239781 Lupinus albus HOM05D000375 ORTHO05D000240 2.6e-07 58.5 64 50.0
TWI15G0310 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 2.6e-07 58.5 72 43.1
Zm00001eb071830 Zea mays HOM05D000375 ORTHO05D000240 2.6e-07 58.5 48 56.2
AUR62007068 Chenopodium quinoa HOM05D000375 ORTHO05D000240 3.3e-07 58.2 38 73.7
FvH4_7g32780 Fragaria vesca HOM05D000375 ORTHO05D000240 3.3e-07 58.2 64 51.6
FAN01G1108 Fragaria x ananassa HOM05D000375 ORTHO05D000240 3.3e-07 58.2 64 51.6
Glyma.04G230600 Glycine max HOM05D000375 ORTHO05D000240 3.3e-07 58.2 64 48.4
MBI12_g07777_MAGBIO Magnolia biondii HOM05D000375 ORTHO05D000240 3.3e-07 58.2 70 51.4
TAR629G0608 Trochodendron aralioides HOM05D000375 ORTHO05D000240 4.4e-07 57.8 65 49.2
EL10Ac3g05196 Beta vulgaris HOM05D000375 ORTHO05D000240 5.7e-07 57.4 41 68.3
Carub.0007s1695 Capsella rubella HOM05D000375 ORTHO05D000240 5.7e-07 57.4 72 52.8
HanXRQChr13g0414361 Helianthus annuus HOM05D000375 ORTHO05D000240 5.7e-07 57.4 75 46.7
MD14G1137600 Malus domestica HOM05D000375 ORTHO05D000240 5.7e-07 57.4 64 54.7
PGR031G1212 Punica granatum HOM05D000375 ORTHO05D000240 5.7e-07 57.4 78 46.2
SEGI_27638 Sequoiadendron giganteum HOM05D000375 ORTHO05D000240 5.7e-07 57.4 75 48.0
Eucgr.C00823 Eucalyptus grandis HOM05D000375 ORTHO05D000240 7.4e-07 57.0 38 63.2
Phvul.009G047000 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 7.4e-07 57.0 64 48.4
C07p53390 Brassica napus HOM05D000375 ORTHO05D000240 9.7e-07 56.6 63 52.4
CSS0005525 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 9.7e-07 56.6 79 45.6
CSS0047007 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 9.7e-07 56.6 78 46.2
CAN.G567.95 Capsicum annuum HOM05D000375 ORTHO05D000240 9.7e-07 56.6 64 54.7
FAN10G2746 Fragaria x ananassa HOM05D000375 ORTHO05D000240 9.7e-07 56.6 67 52.2
Manes.01G041800 Manihot esculenta HOM05D000375 ORTHO05D000240 9.7e-07 56.6 67 52.2
PSO063G6301 Papaver somniferum HOM05D000375 ORTHO05D000240 9.7e-07 56.6 51 56.9
PSO782G1866 Papaver somniferum HOM05D000375 ORTHO05D000240 9.7e-07 56.6 51 56.9
Rhsim03G0214300 Rhododendron simsii HOM05D000375 ORTHO05D000240 9.7e-07 56.6 66 48.5
TWI32G0116 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 9.7e-07 56.6 75 44.0
BraA01t01486Z Brassica rapa HOM05D000375 ORTHO05D000240 1.3e-06 56.2 76 44.7
FvH4_1g08440 Fragaria vesca HOM05D000375 ORTHO05D000240 1.3e-06 56.2 70 42.9
FAN23G0528 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.3e-06 56.2 70 42.9
FAN26G2069 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.3e-06 56.2 70 42.9
FAN28G2382 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.3e-06 56.2 70 42.9
Lj1C1027T4 Lonicera japonica HOM05D000375 ORTHO05D000240 1.3e-06 56.2 77 45.5
RcHm_v2.0_Chr1g0382681 Rosa chinensis HOM05D000375 ORTHO05D000240 1.3e-06 56.2 68 50.0
RcHm_v2.0_Chr2g0094541 Rosa chinensis HOM05D000375 ORTHO05D000240 1.3e-06 56.2 70 42.9
RcHm_v2.0_Chr7g0187381 Rosa chinensis HOM05D000375 ORTHO05D000240 1.3e-06 56.2 80 48.8
TAR629G1540 Trochodendron aralioides HOM05D000375 ORTHO05D000240 1.3e-06 56.2 47 55.3
arahy.Tifrunner.gnm1.ann1.95DHJ9 Arachis hypogaea HOM05D000375 ORTHO05D000240 1.7e-06 55.8 50 58.0
arahy.Tifrunner.gnm1.ann1.MSLW3U Arachis hypogaea HOM05D000375 ORTHO05D000240 1.7e-06 55.8 50 58.0
DCAR_008187 Daucus carota HOM05D000375 ORTHO05D000240 1.7e-06 55.8 37 64.9
RcHm_v2.0_Chr6g0310051 Rosa chinensis HOM05D000375 ORTHO05D000240 1.7e-06 55.8 70 45.7
Sabra12G0011200 Salix brachista HOM05D000375 ORTHO05D000240 1.7e-06 55.8 64 50.0
THA.LOC104804196 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 1.7e-06 55.8 69 47.8
TWI14G0388 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 1.7e-06 55.8 64 50.0
MSTRG.1777 Avicennia marina HOM05D000375 ORTHO05D000240 2.2e-06 55.5 64 46.9
FAN26G2446 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.2e-06 55.5 49 51.0
Lj1g0010685 Lotus japonicus HOM05D000375 ORTHO05D000240 2.2e-06 55.5 64 50.0
MBI13_g27162_MAGBIO Magnolia biondii HOM05D000375 ORTHO05D000240 2.2e-06 55.5 64 43.8
MBI13_g46362_MAGBIO Magnolia biondii HOM05D000375 ORTHO05D000240 2.2e-06 55.5 64 43.8
GSVIVG01024326001 Vitis vinifera HOM05D000375 ORTHO05D000240 2.2e-06 55.5 47 57.4
Aa31LG6G14620 Aethionema arabicum HOM05D000375 ORTHO05D000240 2.8e-06 55.1 69 46.4
Carub.0004s0197 Capsella rubella HOM05D000375 ORTHO05D000240 2.8e-06 55.1 69 47.8
CDE09G0396 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 2.8e-06 55.1 65 50.8
Lalb_Chr11g0067311 Lupinus albus HOM05D000375 ORTHO05D000240 2.8e-06 55.1 64 51.6
Zm00001eb269150 Zea mays HOM05D000375 ORTHO05D000240 2.8e-06 55.1 39 61.5
Aqoxy5G04212 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 3.7e-06 54.7 84 44.0
AL4G12420 Arabidopsis lyrata HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
AT2G22840 Arabidopsis thaliana HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
BcaB01g02977 Brassica carinata HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
BcaC01g04870 Brassica carinata HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
BcaC06g33371 Brassica carinata HOM05D000375 ORTHO05D000240 3.7e-06 54.7 69 46.4
A03p27300 Brassica napus HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
A03p65540 Brassica napus HOM05D000313 ORTHO05D000065 3.7e-06 54.7 69 46.4
C03p32810 Brassica napus HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
C07p62620 Brassica napus HOM05D000375 ORTHO05D000240 3.7e-06 54.7 69 46.4
BolC3t15616H Brassica oleracea HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
BolC7t46678H Brassica oleracea HOM05D000375 ORTHO05D000240 3.7e-06 54.7 69 46.4
BraA03t11941Z Brassica rapa HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
BraA03t15606Z Brassica rapa HOM05D000375 ORTHO05D000240 3.7e-06 54.7 69 46.4
CARHR114150 Cardamine hirsuta HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
CiPaw.05G212700 Carya illinoinensis HOM05D000375 ORTHO05D000240 3.7e-06 54.7 35 68.6
Thhalv10000124m.g Eutrema salsugineum HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
FAN03G1345 Fragaria x ananassa HOM05D000375 ORTHO05D000240 3.7e-06 54.7 68 50.0
FAN03G2868 Fragaria x ananassa HOM05D000375 ORTHO05D000240 3.7e-06 54.7 68 50.0
Sabra01G0102300 Salix brachista HOM05D000375 ORTHO05D000240 3.7e-06 54.7 51 54.9
Sabra13G0066200 Salix brachista HOM05D000375 ORTHO05D000240 3.7e-06 54.7 45 57.8
Sp4g01880 Schrenkiella parvula HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
SpUn0042_0030 Schrenkiella parvula HOM05D000375 ORTHO05D000240 3.7e-06 54.7 66 47.0
Thecc.03G207100 Theobroma cacao HOM05D000375 ORTHO05D000240 3.7e-06 54.7 65 50.8
HPP92_003429 Vanilla planifolia HOM05D000375 ORTHO05D000240 3.7e-06 54.7 69 44.9
Zm00001eb430300 Zea mays HOM05D000375 ORTHO05D000240 3.7e-06 54.7 48 56.2
Ah.13g072380 Amaranthus hybridus HOM05D000375 ORTHO05D000240 4.8e-06 54.3 77 41.6
AL7G12940 Arabidopsis lyrata HOM05D000375 ORTHO05D000240 4.8e-06 54.3 69 46.4
AT4G37740 Arabidopsis thaliana HOM05D000375 ORTHO05D000240 4.8e-06 54.3 69 46.4
Carub.0007s0251 Capsella rubella HOM05D000375 ORTHO05D000240 4.8e-06 54.3 69 46.4
CDE04G2815 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 4.8e-06 54.3 38 63.2
Sp7g35390 Schrenkiella parvula HOM05D000375 ORTHO05D000240 4.8e-06 54.3 69 46.4
THA.LOC104805653 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 4.8e-06 54.3 70 42.9
THA.LOC104807639 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 4.8e-06 54.3 69 44.9
BcaC01g03962 Brassica carinata HOM05D000375 ORTHO05D000240 6.3e-06 53.9 70 41.4
BolC3t16934H Brassica oleracea HOM05D000375 ORTHO05D000240 6.3e-06 53.9 70 41.4
CSS0000868 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 6.3e-06 53.9 76 44.7
CDE06G0926 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 6.3e-06 53.9 35 65.7
DCAR_004248 Daucus carota HOM05D000375 ORTHO05D000240 6.3e-06 53.9 35 62.9
Glyma.06G134600 Glycine max HOM05D000375 ORTHO05D000240 6.3e-06 53.9 64 46.9
PSO017G0674 Papaver somniferum HOM05D000375 ORTHO05D000240 6.3e-06 53.9 72 43.1
PSO170G1517 Papaver somniferum HOM05D000375 ORTHO05D000240 6.3e-06 53.9 72 43.1
Hund08732 Selenicereus undatus HOM05D000375 ORTHO05D000240 6.3e-06 53.9 35 68.6
THA.LOC104819885 Tarenaya hassleriana HOM05D000375 ORTHO05D000240 6.3e-06 53.9 71 45.1
A03p38570 Brassica napus HOM05D000375 ORTHO05D000240 8.2e-06 53.5 70 41.4
CARHR246130 Cardamine hirsuta HOM05D000375 ORTHO05D000240 8.2e-06 53.5 69 46.4
CDE11G0904 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 8.2e-06 53.5 64 51.6
Gohir.A02G125800 Gossypium hirsutum HOM05D000375 ORTHO05D000240 8.2e-06 53.5 43 58.1
Gohir.D03G054900 Gossypium hirsutum HOM05D000375 ORTHO05D000240 8.2e-06 53.5 43 58.1
Gorai.003G057700 Gossypium raimondii HOM05D000375 ORTHO05D000240 8.2e-06 53.5 43 58.1
MD15G1300900 Malus domestica HOM05D000375 ORTHO05D000240 8.2e-06 53.5 72 47.2
SalBow6G6588 Salvia bowleyana HOM05D000375 ORTHO05D000240 8.2e-06 53.5 77 45.5
SEGI_12426 Sequoiadendron giganteum HOM05D000375 ORTHO05D000240 8.2e-06 53.5 60 50.0
TWI60G1010 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 8.2e-06 53.5 35 65.7


User provided reference genes

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