Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 2.6e-21 104.4 49 100.0
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 2.6e-21 104.4 49 100.0
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 5.2e-14 80.1 49 77.6
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 6.8e-14 79.7 49 77.6
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 6.8e-14 79.7 49 77.6
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 1.5e-13 78.6 49 71.4
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 3.4e-13 77.4 49 77.6
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 3.4e-13 77.4 49 75.5
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 3.4e-13 77.4 49 73.5
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 4.4e-13 77.0 48 77.1
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 7.5e-13 76.3 49 75.5
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 7.5e-13 76.3 49 75.5
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 9.8e-13 75.9 49 73.5
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 1.7e-12 75.1 49 73.5
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 2.2e-12 74.7 49 73.5
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 2.2e-12 74.7 49 73.5
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 3.7e-12 73.9 49 71.4
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 3.7e-12 73.9 49 75.5
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 6.4e-12 73.2 49 71.4
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 8.3e-12 72.8 49 67.3
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 1.1e-11 72.4 49 67.3
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.4e-11 72.0 49 69.4
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 2.4e-11 71.2 49 69.4
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 4.1e-11 70.5 49 61.2
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 4.1e-11 70.5 49 61.2
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 4.1e-11 70.5 49 71.4
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 4.1e-11 70.5 49 67.3
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 7.0e-11 69.7 48 60.4
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 7.0e-11 69.7 49 63.3
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 7.0e-11 69.7 49 61.2
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 7.0e-11 69.7 49 67.3
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 9.2e-11 69.3 49 61.2
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 9.2e-11 69.3 49 61.2
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 9.2e-11 69.3 49 67.3
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 1.2e-10 68.9 49 61.2
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 1.2e-10 68.9 49 59.2
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.2e-10 68.9 49 59.2
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 1.2e-10 68.9 48 64.6
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 1.2e-10 68.9 49 67.3
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 1.6e-10 68.6 49 69.4
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 2.0e-10 68.2 49 67.3
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 2.7e-10 67.8 47 59.6
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 6.0e-10 66.6 49 57.1
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 6.0e-10 66.6 49 57.1
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 6.0e-10 66.6 49 65.3
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 6.0e-10 66.6 49 55.1
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 7.8e-10 66.2 49 57.1
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.3e-09 65.5 49 57.1
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 1.3e-09 65.5 49 63.3
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.3e-09 65.5 49 63.3
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 1.7e-09 65.1 49 57.1
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 2.3e-09 64.7 49 57.1
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 3.0e-09 64.3 49 59.2
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 3.9e-09 63.9 49 57.1
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 3.9e-09 63.9 49 59.2
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 6.6e-09 63.2 49 55.1
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 6.6e-09 63.2 49 63.3
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 8.6e-09 62.8 49 55.1
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 8.6e-09 62.8 49 61.2
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 1.1e-08 62.4 49 63.3
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 1.1e-08 62.4 49 57.1
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 1.5e-08 62.0 49 57.1
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.5e-08 61.2 49 53.1
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 3.3e-08 60.8 49 61.2
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 3.3e-08 60.8 49 61.2
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 5.6e-08 60.1 49 59.2
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 7.3e-08 59.7 46 58.7
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 7.3e-08 59.7 47 59.6
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 9.5e-08 59.3 49 61.2
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 9.5e-08 59.3 49 53.1
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 1.6e-07 58.5 49 59.2
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 1.6e-07 58.5 49 59.2
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 2.1e-07 58.2 49 59.2
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 2.8e-07 57.8 49 59.2
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 4.7e-07 57.0 49 63.3
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 6.2e-07 56.6 49 57.1
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 1.1e-06 55.8 49 55.1
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 1.1e-06 55.8 49 55.1
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 1.4e-06 55.5 49 46.9
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 1.4e-06 55.5 38 71.1
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 1.4e-06 55.5 38 71.1
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 1.8e-06 55.1 49 55.1
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 2.3e-06 54.7 49 44.9
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 3.1e-06 54.3 49 53.1
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 8.9e-06 52.8 49 57.1
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 8.9e-06 52.8 49 53.1


User provided reference genes

Program Settings