Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.1e-89 333.2 155 100.0
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.1e-89 333.2 155 100.0
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 3.5e-80 301.6 154 89.0
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 3.5e-80 301.6 154 87.7
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 3.5e-80 301.6 152 89.5
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 4.5e-80 301.2 152 90.1
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 5.9e-80 300.8 154 87.0
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 7.8e-80 300.4 154 87.7
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 7.8e-80 300.4 154 88.3
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.0e-79 300.1 151 91.4
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.0e-79 300.1 154 86.4
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.7e-79 299.3 152 88.2
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.7e-79 299.3 154 87.0
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.7e-79 299.3 154 87.0
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.7e-79 299.3 154 88.3
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 2.3e-79 298.9 154 87.0
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 2.3e-79 298.9 154 87.0
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 2.3e-79 298.9 154 86.4
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.3e-79 298.9 154 88.3
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.3e-79 298.9 154 88.3
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 2.9e-79 298.5 152 90.1
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 2.9e-79 298.5 152 90.1
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 2.9e-79 298.5 154 87.0
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 3.9e-79 298.1 155 87.7
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 3.9e-79 298.1 154 88.3
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 6.6e-79 297.4 152 88.2
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 6.6e-79 297.4 154 87.7
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 8.6e-79 297.0 152 88.2
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.1e-78 296.6 154 86.4
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.5e-78 296.2 154 87.7
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.9e-78 295.8 154 87.7
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.5e-78 295.4 154 89.0
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.5e-78 295.4 154 85.1
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 3.3e-78 295.0 152 86.8
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 3.3e-78 295.0 154 84.4
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 3.3e-78 295.0 151 87.4
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.3e-78 295.0 152 90.1
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 3.3e-78 295.0 154 87.0
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 4.3e-78 294.7 154 86.4
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 4.3e-78 294.7 154 86.4
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 4.3e-78 294.7 154 86.4
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 4.3e-78 294.7 154 86.4
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 4.3e-78 294.7 154 87.0
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 4.3e-78 294.7 152 88.2
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 4.3e-78 294.7 154 87.7
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 5.6e-78 294.3 154 85.7
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 5.6e-78 294.3 154 86.4
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 7.3e-78 293.9 154 86.4
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 9.5e-78 293.5 154 85.7
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 9.5e-78 293.5 154 87.0
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-77 293.1 152 86.2
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.2e-77 293.1 152 86.2
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.2e-77 293.1 152 87.5
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 1.2e-77 293.1 152 87.5
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.2e-77 293.1 152 88.2
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.2e-77 293.1 152 87.5
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.2e-77 293.1 152 87.5
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.6e-77 292.7 154 85.7
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.6e-77 292.7 152 88.8
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 2.1e-77 292.4 152 86.2
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 2.1e-77 292.4 152 86.8
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.1e-77 292.4 152 87.5
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 2.1e-77 292.4 155 88.4
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 2.1e-77 292.4 152 87.5
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.8e-77 292.0 154 85.7
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.8e-77 292.0 152 87.5
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 3.6e-77 291.6 152 86.2
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 3.6e-77 291.6 154 85.7
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 3.6e-77 291.6 151 88.1
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 3.6e-77 291.6 152 88.2
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.7e-77 291.2 152 86.8
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 6.1e-77 290.8 152 86.8
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 6.1e-77 290.8 151 88.1
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 8.0e-77 290.4 152 86.8
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 8.0e-77 290.4 154 86.4
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 8.0e-77 290.4 152 86.8
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 8.0e-77 290.4 151 88.1
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 1.0e-76 290.0 152 87.5
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.0e-76 290.0 152 86.2
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.0e-76 290.0 154 85.1
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 1.0e-76 290.0 154 86.4
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.4e-76 289.7 152 85.5
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.8e-76 289.3 154 83.8
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.8e-76 289.3 152 87.5
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.8e-76 289.3 152 86.2
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.8e-76 289.3 152 86.2
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 2.3e-76 288.9 152 88.2
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.3e-76 288.9 152 85.5
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.3e-76 288.9 152 87.5
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.1e-76 288.5 152 85.5
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.1e-76 288.5 152 85.5
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.1e-76 288.5 152 85.5
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 3.1e-76 288.5 152 86.8
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 5.2e-76 287.7 153 85.6
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 5.2e-76 287.7 153 85.6
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-75 286.6 152 85.5
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 1.2e-75 286.6 152 85.5
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.5e-75 286.2 151 87.4
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 1.5e-75 286.2 152 85.5
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 2.0e-75 285.8 152 86.8
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 2.0e-75 285.8 153 84.3
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 3.4e-75 285.0 152 84.9
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 3.4e-75 285.0 152 84.9
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 4.4e-75 284.6 152 85.5
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 5.8e-75 284.3 151 87.4
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 5.8e-75 284.3 153 86.3
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 5.8e-75 284.3 152 86.2
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 7.5e-75 283.9 151 86.8
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 7.5e-75 283.9 152 87.5
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 9.8e-75 283.5 154 85.7
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.3e-74 283.1 152 84.9
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.3e-74 283.1 152 84.9
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 1.3e-74 283.1 153 84.3
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 1.7e-74 282.7 154 82.5
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 2.9e-74 282.0 153 85.6
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 3.7e-74 281.6 152 83.6
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.9e-74 281.2 152 86.8
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 1.1e-73 280.0 154 82.5
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.1e-73 280.0 152 84.2
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.4e-73 278.9 152 84.9
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 2.4e-73 278.9 154 82.5
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 3.2e-73 278.5 154 82.5
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 4.1e-73 278.1 152 83.6
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 1.6e-72 276.2 153 84.3
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.6e-72 276.2 153 83.0
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 6.0e-72 274.2 154 82.5
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 6.0e-72 274.2 154 80.5
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 4.3e-70 268.1 154 79.9
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 7.3e-70 267.3 152 79.6
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 9.5e-70 266.9 154 79.2
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.6e-69 266.2 152 79.6
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 4.7e-69 264.6 153 81.0
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 2.0e-67 259.2 151 76.2
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.4e-65 253.1 151 76.8
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 1.9e-65 252.7 158 74.7
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 2.8e-61 238.8 132 81.8
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.1e-60 236.9 154 68.2
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.4e-60 236.5 137 80.3
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 7.5e-59 230.7 158 69.0
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 3.7e-58 228.4 128 81.2
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.2e-53 213.4 147 68.0
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 7.6e-51 204.1 152 68.4
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.3e-50 203.4 151 64.2
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 4.9e-50 201.4 105 85.7
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 6.4e-50 201.1 99 88.9
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 1.5e-46 189.9 96 86.5
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.5e-46 189.1 100 84.0
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 7.9e-32 141.0 69 88.4


User provided reference genes

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