Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 6.2e-67 257.3 128 100.0
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 2.3e-53 212.2 118 91.5
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 9.1e-26 120.6 126 54.0
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 5.9e-25 117.9 126 54.0
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 7.7e-25 117.5 114 56.1
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 1.0e-24 117.1 126 53.2
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 3.8e-24 115.2 126 50.0
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 5.0e-24 114.8 126 51.6
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 1.1e-23 113.6 126 52.4
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 1.9e-23 112.8 126 51.6
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 2.5e-23 112.5 126 49.2
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 2.5e-23 112.5 126 52.4
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 3.2e-23 112.1 114 53.5
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.2e-23 112.1 117 53.0
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.2e-23 112.1 114 53.5
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 4.2e-23 111.7 129 51.9
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 5.5e-23 111.3 114 53.5
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 9.4e-23 110.5 113 53.1
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 1.6e-22 109.8 114 50.9
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 1.6e-22 109.8 114 52.6
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 1.6e-22 109.8 126 49.2
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 1.6e-22 109.8 126 49.2
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 1.6e-22 109.8 114 53.5
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 2.1e-22 109.4 126 50.8
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 2.1e-22 109.4 114 51.8
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 2.1e-22 109.4 126 49.2
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 2.7e-22 109.0 126 46.8
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 2.7e-22 109.0 114 53.5
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 3.6e-22 108.6 114 50.9
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 4.7e-22 108.2 126 50.8
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 4.7e-22 108.2 114 52.6
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 6.1e-22 107.8 114 53.5
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 6.1e-22 107.8 118 52.5
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 1.0e-21 107.1 114 52.6
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.0e-21 107.1 113 52.2
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 1.4e-21 106.7 118 53.4
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 1.8e-21 106.3 114 52.6
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 2.3e-21 105.9 114 50.0
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 3.0e-21 105.5 126 49.2
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 4.0e-21 105.1 114 50.9
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 5.2e-21 104.8 128 46.1
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 6.7e-21 104.4 114 50.0
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 6.7e-21 104.4 114 50.9
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 6.7e-21 104.4 114 50.9
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 6.7e-21 104.4 114 50.9
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 1.1e-20 103.6 114 50.0
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 1.5e-20 103.2 115 48.7
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 2.0e-20 102.8 126 46.8
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 2.6e-20 102.4 126 46.0
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 4.4e-20 101.7 114 50.0
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 4.4e-20 101.7 114 49.1
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 4.4e-20 101.7 114 50.0
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 7.4e-20 100.9 115 49.6
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 9.7e-20 100.5 114 50.0
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 2.8e-19 99.0 113 48.7
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 2.8e-19 99.0 113 48.7
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 1.8e-18 96.3 113 47.8
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 4.1e-18 95.1 114 49.1
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 4.1e-18 95.1 114 49.1
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 7.0e-18 94.4 114 46.5
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 7.0e-18 94.4 120 46.7
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 1.2e-17 93.6 114 44.7
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 1.2e-17 93.6 114 44.7
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 1.6e-17 93.2 114 44.7
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 2.0e-17 92.8 114 45.6
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 3.5e-17 92.0 114 44.7
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 3.5e-17 92.0 114 44.7
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 5.9e-17 91.3 114 46.5
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 5.9e-17 91.3 114 43.0
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 1.0e-16 90.5 114 43.9
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 1.0e-16 90.5 114 43.9
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 1.3e-16 90.1 114 43.9
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 1.3e-16 90.1 114 46.5
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 1.7e-16 89.7 114 43.9
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 1.7e-16 89.7 120 41.7
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 2.2e-16 89.4 114 43.9
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 2.2e-16 89.4 114 43.0
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 2.9e-16 89.0 114 44.7
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 3.8e-16 88.6 114 43.0
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 8.5e-16 87.4 127 40.9
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 8.5e-16 87.4 127 40.9
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 8.5e-16 87.4 114 40.4
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 8.5e-16 87.4 114 43.0
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 1.5e-15 86.7 104 47.1
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 1.9e-15 86.3 115 43.5
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 3.2e-15 85.5 113 42.5
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 4.2e-15 85.1 125 40.0
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 4.2e-15 85.1 114 40.4
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 7.2e-15 84.3 114 39.5
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 7.2e-15 84.3 105 45.7
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.2e-14 83.6 114 41.2
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 3.6e-14 82.0 114 40.4
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 4.7e-14 81.6 114 40.4
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 2.3e-13 79.3 108 45.4
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 3.0e-13 79.0 113 42.5
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 3.0e-13 79.0 114 38.6
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 8.8e-13 77.4 125 40.0
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 1.2e-12 77.0 125 40.0
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 1.2e-12 77.0 125 40.0
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 2.6e-12 75.9 62 62.9
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 2.6e-12 75.9 62 62.9
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 1.3e-11 73.6 114 39.5
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 2.2e-11 72.8 106 41.5
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 1.4e-10 70.1 53 62.3
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 2.2e-08 62.8 112 37.5
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 3.6e-06 55.5 52 53.8
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 6.1e-06 54.7 42 54.8


User provided reference genes

Program Settings