Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c47384 Carica papaya HOM05D001752 ORTHO05D003933 2.9e-16 87.4 44 100.0
Cpa.g.sc17.47 Carica papaya HOM05D001752 ORTHO05D003933 2.9e-16 87.4 44 100.0
CiPaw.09G120000 Carya illinoinensis HOM05D001752 ORTHO05D003933 1.5e-15 85.1 44 95.5
CiPaw.10G088900 Carya illinoinensis HOM05D001752 ORTHO05D003933 1.5e-15 85.1 44 95.5
COL.COLO4_31013 Corchorus olitorius HOM05D001752 ORTHO05D003933 1.5e-15 85.1 44 95.5
Duzib235G0792 Durio zibethinus HOM05D001752 ORTHO05D003933 1.5e-15 85.1 44 95.5
Sp4g16900 Schrenkiella parvula HOM05D001752 ORTHO05D003933 1.9e-15 84.7 44 95.5
Glyma.05G100400 Glycine max HOM05D001752 ORTHO05D003933 2.5e-15 84.3 44 93.2
Glyma.17G166000 Glycine max HOM05D001752 ORTHO05D003933 2.5e-15 84.3 44 93.2
SHI24858 Sapria himalayana HOM05D001752 ORTHO05D003933 2.5e-15 84.3 44 93.2
Atru.chr5.1010 Acer truncatum HOM05D001752 ORTHO05D003933 3.2e-15 84.0 44 93.2
Thhalv10016708m.g Eutrema salsugineum HOM05D001752 ORTHO05D003933 3.2e-15 84.0 44 93.2
Gohir.A10G043800 Gossypium hirsutum HOM05D001752 ORTHO05D003933 3.2e-15 84.0 44 93.2
BcaB02g09520 Brassica carinata HOM05D001752 ORTHO05D003933 4.2e-15 83.6 44 93.2
BcaC02g11539 Brassica carinata HOM05D001752 ORTHO05D003933 4.2e-15 83.6 44 93.2
BcaNung07261 Brassica carinata HOM05D001752 ORTHO05D003933 4.2e-15 83.6 44 93.2
C04p14150 Brassica napus HOM05D001752 ORTHO05D003933 4.2e-15 83.6 44 93.2
BraA05t20048Z Brassica rapa HOM05D001752 ORTHO05D003933 4.2e-15 83.6 44 93.2
Potri.006G135300 Populus trichocarpa HOM05D001752 ORTHO05D003933 4.2e-15 83.6 44 93.2
Potri.010G138800 Populus trichocarpa HOM05D001752 ORTHO05D003933 4.2e-15 83.6 44 93.2
Sabra06G0106100 Salix brachista HOM05D001752 ORTHO05D003933 4.2e-15 83.6 44 93.2
Sed0012054 Sechium edule HOM05D001752 ORTHO05D003933 4.2e-15 83.6 44 90.9
arahy.Tifrunner.gnm1.ann1.2T8IP4 Arachis hypogaea HOM05D001752 ORTHO05D003933 5.5e-15 83.2 44 90.9
arahy.Tifrunner.gnm1.ann1.HGL34I Arachis hypogaea HOM05D001752 ORTHO05D003933 5.5e-15 83.2 44 90.9
Thecc.06G144700 Theobroma cacao HOM05D001752 ORTHO05D003933 5.5e-15 83.2 44 93.2
Eucgr.E02451 Eucalyptus grandis HOM05D001752 ORTHO05D003933 7.2e-15 82.8 44 90.9
GSVIVG01019299001 Vitis vinifera HOM05D001752 ORTHO05D003933 7.2e-15 82.8 44 90.9
arahy.Tifrunner.gnm1.ann1.HABD5Z Arachis hypogaea HOM05D001752 ORTHO05D003933 9.4e-15 82.4 44 88.6
ClCG01G024860 Citrullus lanatus HOM05D001752 ORTHO05D003933 9.4e-15 82.4 44 88.6
MELO3C007109.2 Cucumis melo HOM05D001752 ORTHO05D003933 9.4e-15 82.4 44 88.6
CsaV3_6G051980 Cucumis sativus L. HOM05D001752 ORTHO05D003933 9.4e-15 82.4 44 88.6
Gorai.011G047900 Gossypium raimondii HOM05D001752 ORTHO05D003933 9.4e-15 82.4 44 90.9
Lj4g0014792 Lotus japonicus HOM05D001752 ORTHO05D003933 9.4e-15 82.4 44 88.6
Manes.03G083900 Manihot esculenta HOM05D001752 ORTHO05D003933 9.4e-15 82.4 44 90.9
Sabra10G0107100 Salix brachista HOM05D001752 ORTHO05D003933 9.4e-15 82.4 44 90.9
THA.LOC104820663 Tarenaya hassleriana HOM05D001752 ORTHO05D003933 9.4e-15 82.4 44 90.9
arahy.Tifrunner.gnm1.ann1.HG5XTQ Arachis hypogaea HOM05D001752 ORTHO05D003933 1.2e-14 82.0 44 86.4
BcaC01g05786 Brassica carinata HOM05D001752 ORTHO05D003933 1.2e-14 82.0 44 88.6
A03p19210 Brassica napus HOM05D001752 ORTHO05D003933 1.2e-14 82.0 44 88.6
BolC3t14624H Brassica oleracea HOM05D001752 ORTHO05D003933 1.2e-14 82.0 44 88.6
BraA03t11176Z Brassica rapa HOM05D001752 ORTHO05D003933 1.2e-14 82.0 44 88.6
Ca_24734_v3 Cicer arietinum L. HOM05D001752 ORTHO05D003933 1.2e-14 82.0 44 88.6
Lj2g0024621 Lotus japonicus HOM05D001752 ORTHO05D003933 1.2e-14 82.0 44 88.6
Lalb_Chr09g0333981 Lupinus albus HOM05D001752 ORTHO05D003933 1.2e-14 82.0 44 88.6
THA.LOC104820661 Tarenaya hassleriana HOM05D001752 ORTHO05D003933 1.2e-14 82.0 44 90.9
THA.LOC104820662 Tarenaya hassleriana HOM05D001752 ORTHO05D003933 1.2e-14 82.0 44 90.9
Atru.chr10.1117 Acer truncatum HOM05D001752 ORTHO05D003933 1.6e-14 81.6 44 88.6
Ah.02g110910 Amaranthus hybridus HOM05D001752 ORTHO05D003933 1.6e-14 81.6 44 90.9
CSS0019388 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D003933 1.6e-14 81.6 44 88.6
Ca_22120_v3 Cicer arietinum L. HOM05D001752 ORTHO05D003933 1.6e-14 81.6 44 88.6
Lj7A455G26 Lonicera japonica HOM05D001752 ORTHO05D003933 1.6e-14 81.6 44 88.6
Medtr4g095055 Medicago truncatula HOM05D001752 ORTHO05D003933 1.6e-14 81.6 44 88.6
TPR.G23860 Trifolium pratense HOM05D001752 ORTHO05D003933 1.6e-14 81.6 44 88.6
unitig_26.g9767 Utricularia gibba HOM05D001752 ORTHO05D003933 1.6e-14 81.6 44 88.6
MSTRG.16263 Avicennia marina HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 88.6
MSTRG.7509 Avicennia marina HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 88.6
A05p11030 Brassica napus HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 90.9
CARHR128730 Cardamine hirsuta HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 88.6
CDE11G1008 Ceratophyllum demersum HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 86.4
Ciclev10015336m.g Citrus clementina HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 88.6
Cc09_g03060 Coffea canephora HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 88.6
Lalb_Chr05g0226141 Lupinus albus HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 88.6
Nn3g20339 Nelumbo nucifera HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 88.6
Oeu035786.1 Olea europaea HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 88.6
Phvul.003G239100 Phaseolus vulgaris HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 88.6
QL05p055167 Quercus lobata HOM05D001752 ORTHO05D003933 2.1e-14 81.3 44 88.6
Actinidia39590 Actinidia chinensis HOM05D001752 ORTHO05D003933 2.7e-14 80.9 44 86.4
Gohir.D10G045000 Gossypium hirsutum HOM05D001752 ORTHO05D003933 2.7e-14 80.9 44 88.6
Nitab4.5_0002071g0040 Nicotiana tabacum HOM05D001752 ORTHO05D003933 2.7e-14 80.9 44 88.6
AT2G34630 Arabidopsis thaliana HOM05D001752 ORTHO05D003933 3.6e-14 80.5 44 86.4
C03p22410 Brassica napus HOM05D001752 ORTHO05D003933 3.6e-14 80.5 44 86.4
CDE05G2585 Ceratophyllum demersum HOM05D001752 ORTHO05D003933 3.6e-14 80.5 44 86.4
Sc25g0002910 Simmondsia chinensis HOM05D001752 ORTHO05D003933 3.6e-14 80.5 44 88.6
CANSAT35G1643 Cannabis sativa HOM05D001752 ORTHO05D003933 4.7e-14 80.1 44 84.1
DCAR_019378 Daucus carota HOM05D001752 ORTHO05D003933 4.7e-14 80.1 44 86.4
MBI18_g11223_MAGBIO Magnolia biondii HOM05D001752 ORTHO05D003933 4.7e-14 80.1 44 86.4
Oeu032719.1 Olea europaea HOM05D001752 ORTHO05D003933 4.7e-14 80.1 44 86.4
Psat4g084000 Pisum sativum HOM05D001752 ORTHO05D003933 4.7e-14 80.1 44 86.4
SGA_v2.0_scaffold223G42822 Striga asiatica HOM05D001752 ORTHO05D003933 4.7e-14 80.1 44 86.4
TAR624G0447 Trochodendron aralioides HOM05D001752 ORTHO05D003933 4.7e-14 80.1 44 86.4
vmacro10966 Vaccinium macrocarpon HOM05D001752 ORTHO05D003933 4.7e-14 80.1 44 86.4
Aa31LG10G6720 Aethionema arabicum HOM05D001752 ORTHO05D003933 6.1e-14 79.7 44 84.1
Lj9A714T21 Lonicera japonica HOM05D001752 ORTHO05D003933 6.1e-14 79.7 44 84.1
Lalb_Chr16g0388861 Lupinus albus HOM05D001752 ORTHO05D003933 6.1e-14 79.7 44 86.4
Nitab4.5_0000315g0070 Nicotiana tabacum HOM05D001752 ORTHO05D003933 6.1e-14 79.7 44 86.4
THA.LOC104814312 Tarenaya hassleriana HOM05D001752 ORTHO05D003933 6.1e-14 79.7 44 86.4
AL4G30620 Arabidopsis lyrata HOM05D001752 ORTHO05D003933 8.0e-14 79.3 44 84.1
Carub.0004s1632 Capsella rubella HOM05D001752 ORTHO05D003933 8.0e-14 79.3 44 84.1
Prupe.4G085300 Prunus persica HOM05D001752 ORTHO05D003933 8.0e-14 79.3 44 86.4
ATR1098G155 Amborella trichopoda HOM05D001752 ORTHO05D003933 1.0e-13 79.0 44 84.1
ECA240G4835 Erigeron canadensis HOM05D001752 ORTHO05D010592 1.0e-13 79.0 44 84.1
HanXRQChr03g0064741 Helianthus annuus HOM05D001752 ORTHO05D003933 1.0e-13 79.0 44 84.1
Rhsim02G0159400 Rhododendron simsii HOM05D001752 ORTHO05D003933 1.0e-13 79.0 44 84.1
PGR004G1548 Punica granatum HOM05D001752 ORTHO05D003933 1.4e-13 78.6 44 86.4
Rhsim05G0190400 Rhododendron simsii HOM05D001752 ORTHO05D003933 1.4e-13 78.6 44 84.1
Ah.11g041640 Amaranthus hybridus HOM05D001752 ORTHO05D003933 1.8e-13 78.2 44 86.4
CAN.G1226.43 Capsicum annuum HOM05D001752 ORTHO05D003933 1.8e-13 78.2 44 84.1
Dinv21526 Davidia involucrata HOM05D001752 ORTHO05D003933 1.8e-13 78.2 44 84.1
Rhsim07G0216400 Rhododendron simsii HOM05D001752 ORTHO05D003933 1.8e-13 78.2 44 84.1
Aqoxy5G01321 Aquilegia oxysepala HOM05D001752 ORTHO05D003933 2.3e-13 77.8 44 84.1
COL.COLO4_19227 Corchorus olitorius HOM05D001752 ORTHO05D003933 2.3e-13 77.8 44 86.4
Gohir.D07G109900 Gossypium hirsutum HOM05D001752 ORTHO05D003933 2.3e-13 77.8 44 84.1
MD05G1280000 Malus domestica HOM05D001752 ORTHO05D003933 2.3e-13 77.8 44 84.1
Peaxi162Scf00045g02426 Petunia axillaris HOM05D001752 ORTHO05D003933 2.3e-13 77.8 44 84.1
Solyc08g023470.3 Solanum lycopersicum HOM05D001752 ORTHO05D003933 2.3e-13 77.8 44 84.1
Sopen08g008630 Solanum pennellii HOM05D001752 ORTHO05D003933 2.3e-13 77.8 44 84.1
TWI09G0900 Tripterygium wilfordii HOM05D001752 ORTHO05D003933 2.3e-13 77.8 44 86.4
Lsat_1_v5_gn_7_49040 Lactuca sativa HOM05D001752 ORTHO05D003933 3.0e-13 77.4 44 81.8
Os06g0678200 Oryza sativa ssp. japonica HOM05D001752 ORTHO05D003933 3.0e-13 77.4 44 79.5
Duzib168G0633 Durio zibethinus HOM05D001752 ORTHO05D003933 4.0e-13 77.0 44 84.1
FvH4_3g05080 Fragaria vesca HOM05D001752 ORTHO05D003933 4.0e-13 77.0 44 81.8
FAN11G3589 Fragaria x ananassa HOM05D001752 ORTHO05D003933 4.0e-13 77.0 44 81.8
FAN16G1751 Fragaria x ananassa HOM05D001752 ORTHO05D003933 4.0e-13 77.0 44 81.8
FAN25G3064 Fragaria x ananassa HOM05D001752 ORTHO05D003933 4.0e-13 77.0 44 81.8
Thecc.06G144800 Theobroma cacao HOM05D001752 ORTHO05D003933 4.0e-13 77.0 44 86.4
Zm00001eb224640 Zea mays HOM05D001752 ORTHO05D003933 4.0e-13 77.0 44 79.5
CSS0017352 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D003933 5.2e-13 76.6 44 84.1
Duzib192G0405 Durio zibethinus HOM05D001752 ORTHO05D003933 5.2e-13 76.6 44 86.4
Migut.G00061 Erythranthe guttata HOM05D001752 ORTHO05D003933 5.2e-13 76.6 44 79.5
Gohir.A07G106000 Gossypium hirsutum HOM05D001752 ORTHO05D003933 5.2e-13 76.6 44 81.8
Hund10801 Selenicereus undatus HOM05D001752 ORTHO05D003933 5.2e-13 76.6 44 81.8
Sc19g0006420 Simmondsia chinensis HOM05D001752 ORTHO05D003933 5.2e-13 76.6 44 81.8
Thecc.09G296000 Theobroma cacao HOM05D001752 ORTHO05D003933 5.2e-13 76.6 44 84.1
Zm00001eb224620 Zea mays HOM05D001752 ORTHO05D003933 5.2e-13 76.6 44 79.5
CAN.G633.1 Capsicum annuum HOM05D001752 ORTHO05D003933 6.8e-13 76.3 44 81.8
RcHm_v2.0_Chr5g0014811 Rosa chinensis HOM05D001752 ORTHO05D003933 6.8e-13 76.3 44 79.5
TWI73G0250 Tripterygium wilfordii HOM05D001752 ORTHO05D003933 6.8e-13 76.3 44 84.1
MD05G1280200 Malus domestica HOM05D001752 ORTHO05D003933 8.8e-13 75.9 44 81.8
Atru.chr10.1119 Acer truncatum HOM05D001752 ORTHO05D003933 1.2e-12 75.5 44 84.1
AUR62002688 Chenopodium quinoa HOM05D001752 ORTHO05D003933 1.2e-12 75.5 44 81.8
AUR62030144 Chenopodium quinoa HOM05D001752 ORTHO05D003933 1.2e-12 75.5 44 81.8
SalBow8G0683 Salvia bowleyana HOM05D001752 ORTHO05D003933 1.5e-12 75.1 44 79.5
EL10Ac1g00430 Beta vulgaris HOM05D001752 ORTHO05D003933 2.0e-12 74.7 44 79.5
AUR62041868 Chenopodium quinoa HOM05D001752 ORTHO05D003933 4.4e-12 73.6 44 75.0
AUR62043008 Chenopodium quinoa HOM05D001752 ORTHO05D003933 7.5e-12 72.8 44 75.0
COL.COLO4_31015 Corchorus olitorius HOM05D001752 ORTHO05D003933 9.8e-12 72.4 44 81.8
Gorai.001G118100 Gossypium raimondii HOM05D001752 ORTHO05D003933 9.8e-12 72.4 44 77.3
MD10G1258500 Malus domestica HOM05D001752 ORTHO05D003933 9.8e-12 72.4 44 77.3
PSO063G4095 Papaver somniferum HOM05D001752 ORTHO05D003933 1.3e-11 72.0 44 79.5
PSO541G2557 Papaver somniferum HOM05D001752 ORTHO05D003933 1.3e-11 72.0 44 72.7
PSO675G4072 Papaver somniferum HOM05D001752 ORTHO05D003933 1.3e-11 72.0 44 72.7
HPP92_026527 Vanilla planifolia HOM05D001752 ORTHO05D003933 1.7e-11 71.6 44 75.0
HPP92_026554 Vanilla planifolia HOM05D001752 ORTHO05D003933 1.7e-11 71.6 44 75.0
PSO063G0049 Papaver somniferum HOM05D001752 ORTHO05D003933 2.8e-11 70.9 44 70.5
AagrBONN_evm.TU.Sc2ySwM_344.3945 Anthoceros agrestis HOM05D001752 ORTHO05D003933 6.3e-11 69.7 44 75.0
PSO724G0221 Papaver somniferum HOM05D001752 ORTHO05D003933 6.3e-11 69.7 44 72.7
Pp3c8_7380 Physcomitrium patens HOM05D001752 ORTHO05D003933 6.3e-11 69.7 44 72.7
Sed0015613 Sechium edule HOM05D001752 ORTHO05D003933 6.3e-11 69.7 40 80.0
Mapoly0043s0003 Marchantia polymorpha HOM05D001752 ORTHO05D003933 1.8e-10 68.2 44 72.7
Ciclev10015559m.g Citrus clementina HOM05D001752 ORTHO05D003933 2.4e-10 67.8 44 75.0
PSO675G1934 Papaver somniferum HOM05D002898 ORTHO05D003933 3.1e-10 67.4 44 72.7
PGR031G0881 Punica granatum HOM05D001752 ORTHO05D003933 3.1e-10 67.4 44 75.0
SMO141G0186 Selaginella moellendorffii HOM05D001752 ORTHO05D003933 3.1e-10 67.4 44 70.5
BcaB06g28788 Brassica carinata HOM05D001752 ORTHO05D003933 5.4e-10 66.6 42 81.0
PSO675G1617 Papaver somniferum HOM05D002898 ORTHO05D003933 5.4e-10 66.6 44 72.7
PSO339G0257 Papaver somniferum HOM05D002898 ORTHO05D003933 2.0e-09 64.7 44 63.6
RcHm_v2.0_Chr5g0014891 Rosa chinensis HOM05D001752 ORTHO05D003933 3.5e-09 63.9 42 66.7
PSO339G4160 Papaver somniferum HOM05D002898 ORTHO05D003933 1.0e-08 62.4 45 68.9
PSO063G5674 Papaver somniferum HOM05D001752 ORTHO05D003933 1.3e-08 62.0 44 61.4
CBR_g47123 Chara braunii HOM05D001752 ORTHO05D003933 3.8e-08 60.5 44 65.9
Haze_05672 Corylus avellana HOM05D001752 ORTHO05D003933 4.2e-07 57.0 32 90.6
Pp3c3_31610 Physcomitrium patens HOM05D001752 ORTHO05D003933 1.6e-06 55.1 44 61.4
MCO03G218 Micromonas commoda HOM05D001752 ORTHO05D003933 3.6e-06 53.9 43 58.1


User provided reference genes

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