Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 2.0e-25 118.2 58 100.0
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 2.0e-17 91.7 56 82.1
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 6.0e-17 90.1 58 81.0
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 6.0e-17 90.1 58 81.0
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 8.6e-16 86.3 56 78.6
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 8.6e-16 86.3 54 79.6
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 1.1e-15 85.9 58 74.1
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.5e-15 85.5 54 79.6
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 3.3e-15 84.3 56 75.0
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 3.3e-15 84.3 56 76.8
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 9.5e-15 82.8 56 76.8
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 1.2e-14 82.4 58 74.1
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 1.6e-14 82.0 57 73.7
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 1.6e-14 82.0 57 73.7
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 2.1e-14 81.6 58 74.1
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 2.1e-14 81.6 50 84.0
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 4.7e-14 80.5 57 73.7
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.4e-13 79.0 58 67.2
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 1.4e-13 79.0 58 70.7
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 1.8e-13 78.6 50 80.0
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 1.8e-13 78.6 50 80.0
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 1.8e-13 78.6 50 80.0
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 2.3e-13 78.2 56 71.4
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 2.3e-13 78.2 56 73.2
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 4.0e-13 77.4 56 75.0
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 5.2e-13 77.0 50 80.0
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 1.2e-12 75.9 56 73.2
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 1.5e-12 75.5 58 67.2
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.5e-12 75.5 45 84.4
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 2.0e-12 75.1 56 73.2
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 2.6e-12 74.7 49 77.6
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 3.4e-12 74.3 56 67.9
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 3.4e-12 74.3 56 67.9
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 3.4e-12 74.3 56 67.9
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 3.4e-12 74.3 56 67.9
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 3.4e-12 74.3 56 67.9
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 4.4e-12 73.9 49 77.6
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 4.4e-12 73.9 58 67.2
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 7.5e-12 73.2 56 69.6
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 7.5e-12 73.2 51 70.6
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 9.8e-12 72.8 58 67.2
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 9.8e-12 72.8 53 75.5
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 1.3e-11 72.4 49 75.5
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 1.3e-11 72.4 58 67.2
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 1.3e-11 72.4 58 63.8
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 1.7e-11 72.0 56 69.6
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 2.9e-11 71.2 49 73.5
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 2.9e-11 71.2 50 72.0
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 2.9e-11 71.2 50 72.0
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 2.9e-11 71.2 50 72.0
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 2.9e-11 71.2 50 72.0
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 2.9e-11 71.2 56 69.6
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 3.7e-11 70.9 58 65.5
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 3.7e-11 70.9 50 72.0
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 3.7e-11 70.9 53 73.6
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 4.9e-11 70.5 47 74.5
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 4.9e-11 70.5 47 74.5
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 6.4e-11 70.1 51 68.6
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 6.4e-11 70.1 56 67.9
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 1.1e-10 69.3 56 67.9
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 1.1e-10 69.3 47 74.5
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 1.1e-10 69.3 58 65.5
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 1.4e-10 68.9 58 60.3
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 1.4e-10 68.9 56 62.5
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 1.9e-10 68.6 49 71.4
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 1.9e-10 68.6 58 63.8
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 2.4e-10 68.2 58 63.8
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 2.4e-10 68.2 56 67.9
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 3.2e-10 67.8 52 65.4
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 5.4e-10 67.0 49 73.5
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 5.4e-10 67.0 49 73.5
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 5.4e-10 67.0 55 67.3
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 7.1e-10 66.6 49 69.4
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 9.2e-10 66.2 49 67.3
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 9.2e-10 66.2 58 63.8
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 9.2e-10 66.2 58 63.8
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 1.6e-09 65.5 55 63.6
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 1.6e-09 65.5 58 63.8
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 2.1e-09 65.1 54 68.5
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 2.1e-09 65.1 52 63.5
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 2.7e-09 64.7 56 67.9
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 2.7e-09 64.7 49 67.3
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 4.6e-09 63.9 55 61.8
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 6.0e-09 63.5 58 58.6
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 6.0e-09 63.5 58 56.9
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 7.8e-09 63.2 59 59.3
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 1.3e-08 62.4 51 68.6
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.7e-08 62.0 58 56.9
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 3.0e-08 61.2 47 66.0
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 1.1e-07 59.3 47 61.7
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.9e-07 58.5 46 69.6
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 5.6e-07 57.0 47 63.8
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 1.6e-06 55.5 47 61.7
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 6.2e-06 53.5 53 60.4


User provided reference genes

Program Settings