Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c46170 Carica papaya HOM05D006069 ORTHO05D008101 4.4e-71 271.2 136 100.0
Cpa.g.sc64.165 Carica papaya HOM05D006069 ORTHO05D008101 1.7e-51 206.1 106 99.1
Thecc.08G047500 Theobroma cacao HOM05D006069 ORTHO05D008101 1.3e-41 173.3 111 80.2
Cfa013967 Carpinus fangiana HOM05D006069 ORTHO05D008101 2.1e-41 172.6 108 78.7
COL.COLO4_26120 Corchorus olitorius HOM05D006069 ORTHO05D008101 3.7e-41 171.8 112 78.6
Haze_22649 Corylus avellana HOM05D006069 ORTHO05D008101 4.8e-41 171.4 108 77.8
TWI56G0900 Tripterygium wilfordii HOM05D006069 ORTHO05D008101 6.2e-41 171.0 106 76.4
CiPaw.07G148400 Carya illinoinensis HOM05D006069 ORTHO05D008101 1.8e-40 169.5 106 74.5
Ciclev10002907m.g Citrus clementina HOM05D006069 ORTHO05D008101 9.0e-40 167.2 109 76.1
Haze_22650 Corylus avellana HOM05D003905 ORTHO05D005329 9.0e-40 167.2 108 76.9
Duzib041G0459 Durio zibethinus HOM05D006069 ORTHO05D008101 2.6e-39 165.6 111 75.7
Cfa013969 Carpinus fangiana HOM05D006069 ORTHO05D008101 3.4e-39 165.2 106 76.4
TWI12G0868 Tripterygium wilfordii HOM05D006069 ORTHO05D008101 4.5e-39 164.9 106 73.6
QL02p011928 Quercus lobata HOM05D006069 ORTHO05D008101 7.6e-39 164.1 106 74.5
QL11p034297 Quercus lobata HOM05D006069 ORTHO05D008101 7.6e-39 164.1 106 74.5
Sabra02G0016400 Salix brachista HOM05D006069 ORTHO05D008101 7.6e-39 164.1 101 82.2
Atru.chr13.270 Acer truncatum HOM05D006069 ORTHO05D008101 2.2e-38 162.5 111 73.9
Potri.005G241200 Populus trichocarpa HOM05D006069 ORTHO05D008101 2.2e-38 162.5 101 81.2
Gohir.A05G256400 Gossypium hirsutum HOM05D006069 ORTHO05D008101 2.9e-38 162.2 111 74.8
Gohir.D05G258200 Gossypium hirsutum HOM05D006069 ORTHO05D008101 2.9e-38 162.2 111 74.8
Gorai.009G269500 Gossypium raimondii HOM05D006069 ORTHO05D008101 2.9e-38 162.2 111 74.8
Potri.002G020200 Populus trichocarpa HOM05D006069 ORTHO05D008101 2.9e-38 162.2 103 79.6
Duzib093G2212 Durio zibethinus HOM05D006069 ORTHO05D008101 3.8e-38 161.8 111 73.0
Oeu014170.1 Olea europaea HOM05D006069 ORTHO05D008101 1.2e-36 156.8 100 75.0
Sabra05G0186700 Salix brachista HOM05D006069 ORTHO05D008101 1.0e-35 153.7 101 76.2
Oeu061972.1 Olea europaea HOM05D006069 ORTHO05D008101 1.8e-35 152.9 100 73.0
TAR625G1525 Trochodendron aralioides HOM05D006069 ORTHO05D008101 3.0e-35 152.1 100 72.0
VMungo0647G0980 Vigna mungo HOM05D006069 ORTHO05D008101 1.1e-34 150.2 115 66.1
Hma1.2p1_0733F.1_g210300 Hydrangea macrophylla HOM05D006069 ORTHO05D008101 4.3e-34 148.3 103 70.9
Glyma.14G219800 Glycine max HOM05D006069 ORTHO05D008101 5.6e-34 147.9 113 66.4
Sc02g0008640 Simmondsia chinensis HOM05D006069 ORTHO05D008101 7.4e-34 147.5 106 70.8
Eucgr.H00971 Eucalyptus grandis HOM05D006069 ORTHO05D008101 1.3e-33 146.7 105 73.3
Gohir.A06G002300 Gossypium hirsutum HOM05D006069 ORTHO05D008101 1.3e-33 146.7 113 67.3
Phvul.001G005300 Phaseolus vulgaris HOM05D006069 ORTHO05D008101 1.3e-33 146.7 115 64.3
Prupe.1G363800 Prunus persica HOM05D006069 ORTHO05D008101 1.3e-33 146.7 107 70.1
Gohir.D06G005300 Gossypium hirsutum HOM05D006069 ORTHO05D008101 2.1e-33 146.0 113 67.3
Gorai.010G002500 Gossypium raimondii HOM05D006069 ORTHO05D008101 2.1e-33 146.0 113 67.3
PGR031G1000 Punica granatum HOM05D006069 ORTHO05D008101 2.1e-33 146.0 100 68.0
Lalb_Chr19g0131451 Lupinus albus HOM05D006069 ORTHO05D008101 2.8e-33 145.6 108 66.7
Manes.18G012400 Manihot esculenta HOM05D006069 ORTHO05D008101 6.2e-33 144.4 101 74.3
Dinv31861 Davidia involucrata HOM05D006069 ORTHO05D000038 8.2e-33 144.1 103 67.0
Duzib116G0547 Durio zibethinus HOM05D006069 ORTHO05D008101 8.2e-33 144.1 97 77.3
RcHm_v2.0_Chr6g0303091 Rosa chinensis HOM05D006069 ORTHO05D008101 8.2e-33 144.1 107 70.1
Medtr3g113620 Medicago truncatula HOM05D006069 ORTHO05D008101 1.8e-32 142.9 102 69.6
Lalb_Chr01g0008621 Lupinus albus HOM05D006069 ORTHO05D008101 2.4e-32 142.5 113 61.9
FvH4_2g38290 Fragaria vesca HOM05D006069 ORTHO05D008101 5.3e-32 141.4 104 72.1
CSS0019530 Camellia sinensis var. sinensis HOM05D006069 ORTHO05D008101 6.9e-32 141.0 104 65.4
MD08G1011100 Malus domestica HOM05D006069 ORTHO05D008101 1.2e-31 140.2 109 67.9
Nn6g32021 Nelumbo nucifera HOM05D006069 ORTHO05D008101 1.5e-31 139.8 110 65.5
Oeu054481.1 Olea europaea HOM05D006069 ORTHO05D008101 1.5e-31 139.8 105 70.5
arahy.Tifrunner.gnm1.ann1.LEZM1J Arachis hypogaea HOM05D006069 ORTHO05D008101 2.0e-31 139.4 112 65.2
EL10Ac1g02174 Beta vulgaris HOM05D006069 ORTHO05D008101 2.6e-31 139.0 105 67.6
A02p20240 Brassica napus HOM05D006069 ORTHO05D008101 3.4e-31 138.7 120 60.8
BraA02t07058Z Brassica rapa HOM05D006069 ORTHO05D008101 3.4e-31 138.7 120 60.8
Sp5g30930 Schrenkiella parvula HOM05D006069 ORTHO05D008101 3.4e-31 138.7 118 62.7
BcaC03g15627 Brassica carinata HOM05D006069 ORTHO05D008101 4.5e-31 138.3 120 60.0
C02p33660 Brassica napus HOM05D006069 ORTHO05D008101 4.5e-31 138.3 120 60.0
BolC2t09338H Brassica oleracea HOM05D006069 ORTHO05D008101 4.5e-31 138.3 120 60.0
FAN15G3329 Fragaria x ananassa HOM05D006069 ORTHO05D008101 4.5e-31 138.3 104 70.2
FAN27G3260 Fragaria x ananassa HOM05D006069 ORTHO05D008101 7.6e-31 137.5 104 70.2
AT1G75810 Arabidopsis thaliana HOM05D006069 ORTHO05D008101 1.0e-30 137.1 120 60.0
AL2G35800 Arabidopsis lyrata HOM05D006069 ORTHO05D008101 1.3e-30 136.7 120 60.0
SalBow8G0098 Salvia bowleyana HOM05D006069 ORTHO05D008101 1.7e-30 136.3 104 67.3
Aa31LG4G6010 Aethionema arabicum HOM05D006069 ORTHO05D008101 2.2e-30 136.0 117 59.8
BcaB05g24944 Brassica carinata HOM05D006069 ORTHO05D008101 2.2e-30 136.0 123 59.3
Ca_00837_v3 Cicer arietinum L. HOM05D006069 ORTHO05D008101 2.2e-30 136.0 103 63.1
Thhalv10019558m.g Eutrema salsugineum HOM05D006069 ORTHO05D008101 2.2e-30 136.0 118 61.9
Nitab4.5_0000934g0080 Nicotiana tabacum HOM05D006069 ORTHO05D008101 2.2e-30 136.0 120 58.3
SalBow7G4587 Salvia bowleyana HOM05D006069 ORTHO05D008101 2.2e-30 136.0 99 67.7
Actinidia16995 Actinidia chinensis HOM05D006069 ORTHO05D006669 3.8e-30 135.2 109 60.6
Manes.05G145900 Manihot esculenta HOM05D006069 ORTHO05D008101 3.8e-30 135.2 94 72.3
Actinidia15431 Actinidia chinensis HOM05D006069 ORTHO05D008101 4.9e-30 134.8 112 58.9
CANSAT25G1864 Cannabis sativa HOM05D006069 ORTHO05D008101 1.1e-29 133.7 108 64.8
Solyc04g078060.1 Solanum lycopersicum HOM05D006069 ORTHO05D008101 1.4e-29 133.3 115 60.0
Lalb_Chr03g0033431 Lupinus albus HOM05D006069 ORTHO05D008101 2.5e-29 132.5 109 61.5
SGA_v2.0_scaffold11G05937 Striga asiatica HOM05D006069 ORTHO05D008101 2.5e-29 132.5 101 66.3
Carub.0002s2266 Capsella rubella HOM05D006069 ORTHO05D008101 3.2e-29 132.1 121 57.0
Migut.N03168 Erythranthe guttata HOM05D006069 ORTHO05D008101 4.2e-29 131.7 100 66.0
THA.LOC104811416 Tarenaya hassleriana HOM05D006069 ORTHO05D008101 4.2e-29 131.7 113 59.3
unitig_82.g27107 Utricularia gibba HOM05D006069 ORTHO05D008101 5.5e-29 131.3 100 64.0
PGSC0003DMG400021511 Solanum tuberosum HOM05D006069 ORTHO05D008101 7.1e-29 131.0 115 59.1
MD15G1011100 Malus domestica HOM05D006069 ORTHO05D008101 1.2e-28 130.2 108 63.9
Sopen04g031650 Solanum pennellii HOM05D006069 ORTHO05D008101 1.6e-28 129.8 115 57.4
THA.LOC104805018 Tarenaya hassleriana HOM05D006069 ORTHO05D008101 2.7e-28 129.0 114 60.5
CARHR069230 Cardamine hirsuta HOM05D006069 ORTHO05D008101 4.6e-28 128.3 118 56.8
AUR62041483 Chenopodium quinoa HOM05D006069 ORTHO05D008101 4.6e-28 128.3 107 64.5
Sc15g0004900 Simmondsia chinensis HOM05D006069 ORTHO05D008101 7.9e-28 127.5 102 60.8
Nitab4.5_0000569g0030 Nicotiana tabacum HOM05D006069 ORTHO05D008101 1.8e-27 126.3 106 60.4
unitig_747.g21531 Utricularia gibba HOM05D006069 ORTHO05D008101 1.8e-27 126.3 101 64.4
BcaC08g47069 Brassica carinata HOM05D006069 ORTHO05D008101 2.3e-27 125.9 118 55.1
VMungo1309G1320 Vigna mungo HOM05D006069 ORTHO05D008101 2.3e-27 125.9 104 58.7
Ah.00g000260 Amaranthus hybridus HOM05D006069 ORTHO05D008101 5.1e-27 124.8 105 61.9
Glyma.17G258800 Glycine max HOM05D006069 ORTHO05D008101 8.7e-27 124.0 104 61.5
DCAR_013877 Daucus carota HOM05D006069 ORTHO05D000038 1.1e-26 123.6 104 60.6
Migut.C00852 Erythranthe guttata HOM05D006069 ORTHO05D008101 2.5e-26 122.5 94 66.0
Nitab4.5_0007809g0010 Nicotiana tabacum HOM05D006069 ORTHO05D008101 2.5e-26 122.5 106 59.4
DCAR_016725 Daucus carota HOM05D006069 ORTHO05D008101 1.3e-25 120.2 109 56.0
HanXRQChr13g0387231 Helianthus annuus HOM05D006069 ORTHO05D008101 1.3e-25 120.2 105 60.0
Peaxi162Scf00081g00135 Petunia axillaris HOM05D002628 ORTHO05D008101 1.3e-25 120.2 105 55.2
Glyma.06G023700 Glycine max HOM05D006069 ORTHO05D008101 1.6e-25 119.8 105 58.1
Lsat_1_v5_gn_8_29900 Lactuca sativa HOM05D006069 ORTHO05D008101 2.2e-25 119.4 105 59.0
Psat0s2878g0120 Pisum sativum HOM05D006069 ORTHO05D008101 2.8e-25 119.0 107 57.0
SGA_v2.0_scaffold47G17498 Striga asiatica HOM05D006069 ORTHO05D008101 2.8e-25 119.0 106 59.4
BcaC08g47325 Brassica carinata HOM05D006069 ORTHO05D008101 3.7e-25 118.6 120 55.0
BolC6t40015H Brassica oleracea HOM05D006069 ORTHO05D008101 3.7e-25 118.6 120 55.0
Lalb_Chr23g0266111 Lupinus albus HOM05D006069 ORTHO05D008101 6.3e-25 117.9 108 54.6
C06p49760 Brassica napus HOM05D006069 ORTHO05D008101 8.2e-25 117.5 118 52.5
Rhsim06G0020100 Rhododendron simsii HOM05D006069 ORTHO05D008101 1.1e-24 117.1 93 63.4
Lsat_1_v5_gn_0_33081 Lactuca sativa HOM05D006069 ORTHO05D008101 3.1e-24 115.5 107 56.1
Phvul.009G017800 Phaseolus vulgaris HOM05D006069 ORTHO05D008101 2.6e-23 112.5 94 60.6
arahy.Tifrunner.gnm1.ann1.Q2AYB8 Arachis hypogaea HOM05D006069 ORTHO05D008101 3.4e-23 112.1 108 55.6
PGSC0003DMG400011549 Solanum tuberosum HOM05D006069 ORTHO05D008101 5.9e-23 111.3 115 52.2
Sopen12g030410 Solanum pennellii HOM05D006069 ORTHO05D008101 1.3e-22 110.2 113 51.3
Nitab4.5_0003228g0030 Nicotiana tabacum HOM05D006069 ORTHO05D008101 2.2e-22 109.4 105 54.3
BcaC08g47066 Brassica carinata HOM05D006069 ORTHO05D008101 6.5e-22 107.8 115 53.9
Lalb_Chr11g0061821 Lupinus albus HOM05D006069 ORTHO05D008101 1.1e-21 107.1 104 53.8
arahy.Tifrunner.gnm1.ann1.KJD857 Arachis hypogaea HOM05D006069 ORTHO05D008101 1.4e-21 106.7 108 53.7
Medtr1g025490 Medicago truncatula HOM05D006069 ORTHO05D008101 7.2e-21 104.4 111 47.7
ECA233G2757 Erigeron canadensis HOM05D006069 ORTHO05D008101 1.2e-20 103.6 97 54.6
Aqoxy5G01811 Aquilegia oxysepala HOM05D006069 ORTHO05D008101 2.1e-20 102.8 111 46.8
Psat6g002280 Pisum sativum HOM05D006069 ORTHO05D008101 2.3e-19 99.4 108 45.4
Dinv26438 Davidia involucrata HOM05D006069 ORTHO05D008101 3.9e-19 98.6 75 62.7
PSO170G3064 Papaver somniferum HOM05D006069 ORTHO05D008101 9.7e-18 94.0 115 47.0
PSO700G0183 Papaver somniferum HOM05D006069 ORTHO05D008101 9.7e-18 94.0 115 45.2
Peaxi162Scf00160g00114 Petunia axillaris HOM05D006069 ORTHO05D008101 6.3e-17 91.3 108 48.1
AUR62040543 Chenopodium quinoa HOM05D006069 ORTHO05D009490 4.1e-16 88.6 73 67.1
A07p41340 Brassica napus HOM05D006069 ORTHO05D032697 3.6e-12 75.5 75 54.7
SalBow6G6594 Salvia bowleyana HOM05D006069 ORTHO05D008101 1.7e-09 66.6 56 66.1
SalBow6G5718 Salvia bowleyana HOM05D006069 ORTHO05D008101 3.1e-08 62.4 55 65.5


User provided reference genes

Program Settings