Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c46071 Carica papaya HOM05D005453 ORTHO05D006520 2.4e-57 225.3 115 100.0
Atru.chr11.1866 Acer truncatum HOM05D005453 ORTHO05D006520 1.0e-23 113.6 106 60.4
CiPaw.05G140600 Carya illinoinensis HOM05D005453 ORTHO05D006520 1.0e-20 103.6 114 52.6
Cfa009044 Carpinus fangiana HOM05D005453 ORTHO05D006520 5.1e-20 101.3 110 52.7
Ciclev10031079m.g Citrus clementina HOM05D005453 ORTHO05D006520 1.5e-19 99.8 99 59.6
Haze_12074 Corylus avellana HOM05D005453 ORTHO05D006520 2.5e-19 99.0 110 50.9
QL03p065960 Quercus lobata HOM05D005453 ORTHO05D006520 2.0e-16 89.4 107 49.5
TAR622G1188 Trochodendron aralioides HOM05D005453 ORTHO05D006520 2.2e-15 85.9 106 48.1
FAN07G0689 Fragaria x ananassa HOM05D005453 ORTHO05D006520 3.8e-15 85.1 107 44.9
Sc11g0001640 Simmondsia chinensis HOM05D005453 ORTHO05D006520 3.8e-15 85.1 97 51.5
FAN22G2419 Fragaria x ananassa HOM05D005453 ORTHO05D006520 8.5e-15 84.0 107 44.9
Thhalv10007340m.g Eutrema salsugineum HOM05D005453 ORTHO05D006520 1.1e-14 83.6 105 47.6
THA.LOC104822093 Tarenaya hassleriana HOM05D005453 ORTHO05D006520 1.4e-14 83.2 112 46.4
CARHR024830 Cardamine hirsuta HOM05D005453 ORTHO05D006520 1.9e-14 82.8 103 47.6
Gorai.005G189700 Gossypium raimondii HOM05D005453 ORTHO05D006520 1.9e-14 82.8 112 48.2
Prupe.1G266900 Prunus persica HOM05D005453 ORTHO05D006520 2.5e-14 82.4 104 46.2
Gohir.D02G169300 Gossypium hirsutum HOM05D005453 ORTHO05D006520 5.5e-14 81.3 112 47.3
Sp1g21710 Schrenkiella parvula HOM05D005453 ORTHO05D006520 5.5e-14 81.3 103 46.6
AT1G27070 Arabidopsis thaliana HOM05D005453 ORTHO05D006520 7.2e-14 80.9 101 45.5
GSVIVG01020082001 Vitis vinifera HOM05D005453 ORTHO05D006520 7.2e-14 80.9 105 44.8
Manes.01G191800 Manihot esculenta HOM05D005453 ORTHO05D006520 9.4e-14 80.5 110 46.4
CSS0029199 Camellia sinensis var. sinensis HOM05D005453 ORTHO05D006520 1.6e-13 79.7 109 45.0
FvH4_4g32100 Fragaria vesca HOM05D005453 ORTHO05D006520 2.1e-13 79.3 102 45.1
FAN07G1475 Fragaria x ananassa HOM05D005453 ORTHO05D006520 2.7e-13 79.0 112 42.9
RcHm_v2.0_Chr4g0440791 Rosa chinensis HOM05D005453 ORTHO05D006520 2.7e-13 79.0 107 43.9
Actinidia08209 Actinidia chinensis HOM05D005453 ORTHO05D006520 3.6e-13 78.6 114 42.1
Aqoxy3G03253 Aquilegia oxysepala HOM05D005453 ORTHO05D006520 3.6e-13 78.6 101 49.5
BcaB07g32384 Brassica carinata HOM05D005453 ORTHO05D006520 6.1e-13 77.8 102 46.1
Hund25276 Selenicereus undatus HOM05D005453 ORTHO05D006520 7.9e-13 77.4 98 44.9
Gohir.A03G146000 Gossypium hirsutum HOM05D005453 ORTHO05D006520 1.0e-12 77.0 112 46.4
AUR62026269 Chenopodium quinoa HOM05D005453 ORTHO05D006520 2.3e-12 75.9 108 44.4
CANSAT64G2233 Cannabis sativa HOM05D005453 ORTHO05D006520 3.0e-12 75.5 110 40.0
FAN12G1353 Fragaria x ananassa HOM05D005453 ORTHO05D006520 3.0e-12 75.5 107 43.0
Sabra08G0147800 Salix brachista HOM05D005453 ORTHO05D006520 3.9e-12 75.1 106 43.4
EL10Ac6g13139 Beta vulgaris HOM05D005453 ORTHO05D006520 5.1e-12 74.7 109 44.0
Aa31LG7G8080 Aethionema arabicum HOM05D005453 ORTHO05D006520 6.7e-12 74.3 110 41.8
Thecc.02G232200 Theobroma cacao HOM05D005453 ORTHO05D006520 6.7e-12 74.3 110 47.3
Carub.0001s2390 Capsella rubella HOM05D005453 ORTHO05D006520 8.8e-12 73.9 103 45.6
COL.COLO4_34957 Corchorus olitorius HOM05D005453 ORTHO05D006520 1.1e-11 73.6 97 44.3
Glyma.02G022500 Glycine max HOM05D005453 ORTHO05D006520 1.1e-11 73.6 108 41.7
Glyma.01G041500 Glycine max HOM05D005453 ORTHO05D006520 1.5e-11 73.2 108 41.7
MD13G1079900 Malus domestica HOM05D005453 ORTHO05D006520 1.5e-11 73.2 99 45.5
Dinv34193 Davidia involucrata HOM05D005453 ORTHO05D006520 2.5e-11 72.4 98 46.9
Potri.010G034600 Populus trichocarpa HOM05D005453 ORTHO05D006520 2.5e-11 72.4 103 43.7
Potri.008G194300 Populus trichocarpa HOM05D005453 ORTHO05D006520 3.3e-11 72.0 107 43.0
Phvul.002G067500 Phaseolus vulgaris HOM05D005453 ORTHO05D006520 4.3e-11 71.6 108 42.6
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 5.7e-11 71.2 93 45.2
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 5.7e-11 71.2 93 45.2
MBI05_g12576_MAGBIO Magnolia biondii HOM05D005453 ORTHO05D006520 7.4e-11 70.9 112 42.0
TPR.G29465 Trifolium pratense HOM05D005453 ORTHO05D006520 9.7e-11 70.5 112 45.5
AUR62026459 Chenopodium quinoa HOM05D005453 ORTHO05D006520 1.3e-10 70.1 107 43.9
Sabra10G0030200 Salix brachista HOM05D005453 ORTHO05D006520 3.7e-10 68.6 105 40.0
Duzib268G1123 Durio zibethinus HOM05D005453 ORTHO05D006520 4.8e-10 68.2 101 45.5
Eucgr.B03405 Eucalyptus grandis HOM05D005453 ORTHO05D006520 8.2e-10 67.4 94 44.7
Hund05918 Selenicereus undatus HOM05D005453 ORTHO05D006520 1.1e-09 67.0 102 39.2
vmacro16321 Vaccinium macrocarpon HOM05D005453 ORTHO05D006520 1.1e-09 67.0 105 42.9
Hma1.2p1_0265F.1_g106550 Hydrangea macrophylla HOM05D005453 ORTHO05D006520 1.4e-09 66.6 116 40.5
Medtr5g038210 Medicago truncatula HOM05D005453 ORTHO05D006520 1.4e-09 66.6 113 42.5
Psat2g125480 Pisum sativum HOM05D005453 ORTHO05D006520 1.4e-09 66.6 109 42.2
Rhsim12G0129300 Rhododendron simsii HOM05D005453 ORTHO05D006520 1.8e-09 66.2 104 43.3
arahy.Tifrunner.gnm1.ann1.62035P Arachis hypogaea HOM05D005453 ORTHO05D006520 2.4e-09 65.9 103 38.8
MSTRG.666 Avicennia marina HOM05D005453 ORTHO05D006520 3.1e-09 65.5 112 41.1
BcaC05g26346 Brassica carinata HOM05D005453 ORTHO05D006520 3.1e-09 65.5 86 44.2
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 3.1e-09 65.5 86 44.2
BolC5t31089H Brassica oleracea HOM05D005453 ORTHO05D006520 3.1e-09 65.5 86 44.2
Lj2g0004726 Lotus japonicus HOM05D005453 ORTHO05D006520 4.1e-09 65.1 109 41.3
Lalb_Chr10g0097931 Lupinus albus HOM05D005453 ORTHO05D006520 4.1e-09 65.1 111 40.5
VMungo1215G2350 Vigna mungo HOM05D005453 ORTHO05D006520 5.3e-09 64.7 108 38.0
Actinidia19854 Actinidia chinensis HOM05D005453 ORTHO05D006520 6.9e-09 64.3 114 38.6
arahy.Tifrunner.gnm1.ann1.7H81I7 Arachis hypogaea HOM05D005453 ORTHO05D006520 9.1e-09 63.9 103 37.9
Nn4g23024 Nelumbo nucifera HOM05D005453 ORTHO05D006520 9.1e-09 63.9 100 43.0
vmacro21820 Vaccinium macrocarpon HOM05D005453 ORTHO05D006520 1.2e-08 63.5 104 43.3
PGR102G2554 Punica granatum HOM05D005453 ORTHO05D006520 1.5e-08 63.2 94 40.4
AL1G38420 Arabidopsis lyrata HOM05D005453 ORTHO05D006520 2.0e-08 62.8 80 41.2
Duzib248G1267 Durio zibethinus HOM05D005453 ORTHO05D006520 2.6e-08 62.4 112 35.7
Nitab4.5_0002291g0010 Nicotiana tabacum HOM05D005453 ORTHO05D006520 3.4e-08 62.0 100 42.0
Sopen01g006070 Solanum pennellii HOM05D005453 ORTHO05D006520 4.5e-08 61.6 109 37.6
Nitab4.5_0000679g0110 Nicotiana tabacum HOM05D005453 ORTHO05D006520 5.9e-08 61.2 111 39.6
COL.COLO4_36184 Corchorus olitorius HOM05D005453 ORTHO05D006520 1.0e-07 60.5 96 38.5
Nn3g17115 Nelumbo nucifera HOM05D005453 ORTHO05D006520 1.7e-07 59.7 98 40.8
Peaxi162Scf00209g00610 Petunia axillaris HOM05D005453 ORTHO05D006520 1.7e-07 59.7 95 45.3
MD16G1079800 Malus domestica HOM05D005453 ORTHO05D006520 2.2e-07 59.3 100 37.0
PGSC0003DMG400026781 Solanum tuberosum HOM05D005453 ORTHO05D006520 2.2e-07 59.3 110 38.2
ClCG05G024670 Citrullus lanatus HOM05D005453 ORTHO05D006520 2.9e-07 58.9 101 40.6
Nitab4.5_0002382g0040 Nicotiana tabacum HOM05D005453 ORTHO05D006520 3.8e-07 58.5 102 38.2
arahy.Tifrunner.gnm1.ann1.C864RN Arachis hypogaea HOM05D005453 ORTHO05D006520 5.0e-07 58.2 103 36.9
Peaxi162Scf00026g02226 Petunia axillaris HOM05D005453 ORTHO05D006520 5.0e-07 58.2 93 39.8
Solyc01g010460.4 Solanum lycopersicum HOM05D005453 ORTHO05D006520 5.0e-07 58.2 109 37.6
Nitab4.5_0002969g0050 Nicotiana tabacum HOM05D005453 ORTHO05D006520 6.5e-07 57.8 111 38.7
CAN.G827.6 Capsicum annuum HOM05D005453 ORTHO05D006520 1.1e-06 57.0 108 36.1
CAN.G27.11 Capsicum annuum HOM05D005453 ORTHO05D006520 1.4e-06 56.6 115 41.7
Oeu057176.2 Olea europaea HOM05D005453 ORTHO05D006520 1.9e-06 56.2 91 40.7
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 3.2e-06 55.5 91 37.4
Sed0004157 Sechium edule HOM05D005453 ORTHO05D006520 5.5e-06 54.7 100 37.0
TAR374G0997 Trochodendron aralioides HOM05D005453 ORTHO05D006520 7.2e-06 54.3 149 29.5
Ca_07371_v3 Cicer arietinum L. HOM05D005453 ORTHO05D006520 9.4e-06 53.9 93 39.8


User provided reference genes

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