Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c46066 Carica papaya HOM05D001571 ORTHO05D002889 2.1e-83 312.4 163 100.0
Haze_16995 Corylus avellana HOM05D001571 ORTHO05D002889 5.9e-46 188.0 160 60.6
Cfa001539 Carpinus fangiana HOM05D001571 ORTHO05D002889 1.3e-45 186.8 158 61.4
Ciclev10031139m.g Citrus clementina HOM05D001571 ORTHO05D002889 6.5e-45 184.5 167 60.5
COL.COLO4_10922 Corchorus olitorius HOM05D001571 ORTHO05D002889 7.2e-44 181.0 163 60.1
CSS0000600 Camellia sinensis var. sinensis HOM05D001571 ORTHO05D002889 1.0e-42 177.2 129 67.4
Carub.0005s2192 Capsella rubella HOM05D001571 ORTHO05D002889 1.8e-42 176.4 128 71.1
THA.LOC104810013 Tarenaya hassleriana HOM05D001571 ORTHO05D002889 1.8e-42 176.4 156 60.9
CANSAT56G2593 Cannabis sativa HOM05D001571 ORTHO05D002889 3.0e-42 175.6 150 63.3
CANSAT56G1047 Cannabis sativa HOM05D001571 ORTHO05D002889 6.8e-42 174.5 150 62.0
AL5G36400 Arabidopsis lyrata HOM05D001571 ORTHO05D002889 8.8e-42 174.1 154 60.4
Duzib128G0978 Durio zibethinus HOM05D001571 ORTHO05D002889 8.8e-42 174.1 163 58.9
Sp5g07200 Schrenkiella parvula HOM05D001571 ORTHO05D002889 8.8e-42 174.1 152 59.9
TWI15G1234 Tripterygium wilfordii HOM05D001571 ORTHO05D002889 8.8e-42 174.1 150 62.7
CiPaw.02G180200 Carya illinoinensis HOM05D001571 ORTHO05D002889 1.5e-41 173.3 149 58.4
Gohir.A05G351400 Gossypium hirsutum HOM05D001571 ORTHO05D002889 2.6e-41 172.6 164 57.9
BcaC02g09738 Brassica carinata HOM05D001571 ORTHO05D002889 4.4e-41 171.8 154 61.7
C04p37050 Brassica napus HOM05D001571 ORTHO05D002889 4.4e-41 171.8 154 61.7
BolC4t25281H Brassica oleracea HOM05D001571 ORTHO05D002889 4.4e-41 171.8 154 61.7
Prupe.2G228000 Prunus persica HOM05D001571 ORTHO05D002889 4.4e-41 171.8 134 63.4
Thecc.10G057600 Theobroma cacao HOM05D001571 ORTHO05D002889 4.4e-41 171.8 163 57.7
Lj1g0006572 Lotus japonicus HOM05D001571 ORTHO05D002889 5.7e-41 171.4 128 68.0
QL08p058007 Quercus lobata HOM05D001571 ORTHO05D002889 5.7e-41 171.4 163 58.3
CARHR165260 Cardamine hirsuta HOM05D001571 ORTHO05D002889 1.7e-40 169.9 155 61.9
PGR142G2455 Punica granatum HOM05D001571 ORTHO05D002889 2.2e-40 169.5 161 60.2
Thhalv10010264m.g Eutrema salsugineum HOM05D001571 ORTHO05D002889 2.8e-40 169.1 152 58.6
Gohir.D04G061300 Gossypium hirsutum HOM05D001571 ORTHO05D002889 4.8e-40 168.3 163 57.1
AT3G55260 Arabidopsis thaliana HOM05D001571 ORTHO05D002889 1.1e-39 167.2 159 59.1
Actinidia02980 Actinidia chinensis HOM05D001571 ORTHO05D002889 2.4e-39 166.0 127 63.0
Gorai.012G068200 Gossypium raimondii HOM05D001571 ORTHO05D002889 3.1e-39 165.6 151 57.6
GSVIVG01016639001 Vitis vinifera HOM05D001571 ORTHO05D002889 4.1e-39 165.2 162 58.0
Sed0004302 Sechium edule HOM05D001571 ORTHO05D002889 5.3e-39 164.9 144 60.4
Actinidia34345 Actinidia chinensis HOM05D001571 ORTHO05D002889 7.0e-39 164.5 127 62.2
BcaB02g08435 Brassica carinata HOM05D001571 ORTHO05D002889 7.0e-39 164.5 152 56.6
A04p04690 Brassica napus HOM05D001571 ORTHO05D002889 7.0e-39 164.5 125 66.4
BraA04t16181Z Brassica rapa HOM05D001571 ORTHO05D002889 7.0e-39 164.5 153 58.2
MD07G1190100 Malus domestica HOM05D001571 ORTHO05D002889 7.0e-39 164.5 150 58.0
Aa31LG10G9790 Aethionema arabicum HOM05D001571 ORTHO05D002889 9.1e-39 164.1 148 56.8
Lsat_1_v5_gn_9_66280 Lactuca sativa HOM05D001571 ORTHO05D002889 9.1e-39 164.1 137 63.5
Dinv25962 Davidia involucrata HOM05D001571 ORTHO05D002889 3.5e-38 162.2 156 57.7
Manes.10G037700 Manihot esculenta HOM05D001571 ORTHO05D002889 3.5e-38 162.2 163 55.8
Atru.chr12.561 Acer truncatum HOM05D001571 ORTHO05D002889 7.7e-38 161.0 162 56.2
RcHm_v2.0_Chr1g0365681 Rosa chinensis HOM05D001571 ORTHO05D002889 7.7e-38 161.0 125 62.4
FvH4_7g21240 Fragaria vesca HOM05D001571 ORTHO05D002889 1.3e-37 160.2 152 56.6
FAN06G0368 Fragaria x ananassa HOM05D001571 ORTHO05D002889 1.3e-37 160.2 152 56.6
CsaV3_5G006710 Cucumis sativus L. HOM05D001571 ORTHO05D002889 2.9e-37 159.1 150 56.7
FAN01G0978 Fragaria x ananassa HOM05D001571 ORTHO05D002889 5.0e-37 158.3 152 55.9
FAN10G2236 Fragaria x ananassa HOM05D001571 ORTHO05D002889 5.0e-37 158.3 152 55.9
MD01G1120700 Malus domestica HOM05D001571 ORTHO05D002889 1.9e-36 156.4 150 54.7
FAN03G1509 Fragaria x ananassa HOM05D001571 ORTHO05D002889 1.2e-35 153.7 152 54.6
Glyma.18G286200 Glycine max HOM05D001571 ORTHO05D002889 1.2e-35 153.7 133 63.2
HanXRQChr09g0247691 Helianthus annuus HOM05D001571 ORTHO05D002889 1.6e-35 153.3 137 60.6
Potri.010G211000 Populus trichocarpa HOM05D001571 ORTHO05D002889 1.6e-35 153.3 137 59.1
ClCG02G013440 Citrullus lanatus HOM05D001571 ORTHO05D002889 2.7e-35 152.5 163 52.8
Lj1C931G7 Lonicera japonica HOM05D001571 ORTHO05D002889 8.0e-35 151.0 129 60.5
MBI02_g32398_MAGBIO Magnolia biondii HOM05D001571 ORTHO05D002889 8.0e-35 151.0 149 54.4
Cc02_g08470 Coffea canephora HOM05D001571 ORTHO05D002889 1.0e-34 150.6 128 57.8
Glyma.02G095200 Glycine max HOM05D001571 ORTHO05D002889 1.0e-34 150.6 140 60.0
Aqoxy2G01996 Aquilegia oxysepala HOM05D001571 ORTHO05D002889 1.4e-34 150.2 133 55.6
Phvul.008G015400 Phaseolus vulgaris HOM05D001571 ORTHO05D002889 1.8e-34 149.8 165 52.1
Migut.F00789 Erythranthe guttata HOM05D001571 ORTHO05D002889 2.3e-34 149.4 128 60.2
Nn2g10496 Nelumbo nucifera HOM05D001571 ORTHO05D002889 2.3e-34 149.4 133 57.9
vmacro07143 Vaccinium macrocarpon HOM05D001571 ORTHO05D002889 4.0e-34 148.7 134 54.5
Solyc05g054710.3 Solanum lycopersicum HOM05D001571 ORTHO05D002889 6.8e-34 147.9 153 50.3
Sopen05g033180 Solanum pennellii HOM05D001571 ORTHO05D002889 6.8e-34 147.9 153 51.0
Psat3g185000 Pisum sativum HOM05D001571 ORTHO05D002889 8.8e-34 147.5 145 58.6
Nitab4.5_0008833g0020 Nicotiana tabacum HOM05D001571 ORTHO05D002889 1.2e-33 147.1 164 48.2
Sabra08G0036100 Salix brachista HOM05D001571 ORTHO05D002889 1.2e-33 147.1 137 58.4
arahy.Tifrunner.gnm1.ann1.SN56KM Arachis hypogaea HOM05D001571 ORTHO05D002889 1.5e-33 146.7 163 51.5
arahy.Tifrunner.gnm1.ann1.Y8RRZC Arachis hypogaea HOM05D001571 ORTHO05D002889 1.5e-33 146.7 163 51.5
Gohir.A10G211800 Gossypium hirsutum HOM05D001571 ORTHO05D002889 1.5e-33 146.7 140 55.0
SalBow3G4415 Salvia bowleyana HOM05D001571 ORTHO05D002889 1.5e-33 146.7 128 59.4
Ca_07180_v3 Cicer arietinum L. HOM05D001571 ORTHO05D002889 2.0e-33 146.4 134 59.7
Ca_29879_v3 Cicer arietinum L. HOM05D001571 ORTHO05D002889 2.0e-33 146.4 134 59.7
Gohir.D10G219800 Gossypium hirsutum HOM05D001571 ORTHO05D002889 2.0e-33 146.4 140 55.0
TPR.G15501 Trifolium pratense HOM05D001571 ORTHO05D002889 2.6e-33 146.0 139 53.2
Gorai.011G246500 Gossypium raimondii HOM05D001571 ORTHO05D002889 3.4e-33 145.6 140 54.3
VMungo1383G2086 Vigna mungo HOM05D001571 ORTHO05D002889 7.5e-33 144.4 173 48.6
Medtr7g023060 Medicago truncatula HOM05D001571 ORTHO05D002889 2.2e-32 142.9 132 59.1
MELO3C023829.2 Cucumis melo HOM05D001571 ORTHO05D002889 2.8e-32 142.5 120 61.7
MSTRG.12661 Avicennia marina HOM05D001571 ORTHO05D002889 4.8e-32 141.7 163 49.7
DCAR_015228 Daucus carota HOM05D001571 ORTHO05D002889 6.3e-32 141.4 168 47.6
Sabra10G0163100 Salix brachista HOM05D001571 ORTHO05D002889 6.3e-32 141.4 150 53.3
CAN.G1339.8 Capsicum annuum HOM05D001571 ORTHO05D002889 1.1e-31 140.6 129 53.5
Sc06g0001920 Simmondsia chinensis HOM05D001571 ORTHO05D002889 1.1e-31 140.6 142 55.6
EL10Ac2g03457 Beta vulgaris HOM05D001571 ORTHO05D002889 2.4e-31 139.4 154 53.9
Glyma.20G240000 Glycine max HOM05D001571 ORTHO05D002889 2.4e-31 139.4 126 59.5
TAR369G0154 Trochodendron aralioides HOM05D001571 ORTHO05D002889 5.4e-31 138.3 159 49.7
VMungo0720G3180 Vigna mungo HOM05D001571 ORTHO05D002889 9.1e-31 137.5 125 60.0
AUR62022525 Chenopodium quinoa HOM05D001571 ORTHO05D002889 3.5e-30 135.6 165 52.7
Glyma.10G290900 Glycine max HOM05D001571 ORTHO05D002889 3.5e-30 135.6 125 58.4
Lj5g0009511 Lotus japonicus HOM05D001571 ORTHO05D002889 3.5e-30 135.6 147 53.7
Phvul.007G010100 Phaseolus vulgaris HOM05D001571 ORTHO05D002889 5.9e-30 134.8 162 46.9
TPR.G14012 Trifolium pratense HOM05D001571 ORTHO05D002889 5.9e-30 134.8 165 51.5
ATR0751G109 Amborella trichopoda HOM05D001571 ORTHO05D002889 6.6e-29 131.3 158 48.1
Medtr1g115475 Medicago truncatula HOM05D001571 ORTHO05D002889 8.6e-29 131.0 126 56.3
Lalb_Chr10g0091891 Lupinus albus HOM05D001571 ORTHO05D002889 1.5e-28 130.2 134 56.7
CDE07G1781 Ceratophyllum demersum HOM05D001571 ORTHO05D002889 1.9e-28 129.8 158 47.5
arahy.Tifrunner.gnm1.ann1.7DV1VQ Arachis hypogaea HOM05D001571 ORTHO05D002889 2.5e-28 129.4 126 55.6
RhsimUnG0096900 Rhododendron simsii HOM05D001571 ORTHO05D002889 3.3e-28 129.0 122 55.7
Lalb_Chr21g0307331 Lupinus albus HOM05D001571 ORTHO05D002889 7.2e-28 127.9 127 53.5
SGA_v2.0_scaffold322G48631 Striga asiatica HOM05D001571 ORTHO05D002889 7.2e-28 127.9 127 53.5
Psat6g237280 Pisum sativum HOM05D001571 ORTHO05D002889 3.6e-27 125.6 151 49.0
Psat6g237080 Pisum sativum HOM05D001571 ORTHO05D002889 8.0e-27 124.4 137 50.4
Ca_11301_v3 Cicer arietinum L. HOM05D001571 ORTHO05D002889 1.0e-26 124.0 127 53.5
AUR62035946 Chenopodium quinoa HOM05D001571 ORTHO05D002889 4.0e-26 122.1 127 54.3
ECA232G1166 Erigeron canadensis HOM05D001571 ORTHO05D002889 4.4e-25 118.6 110 56.4
Zm00001eb266300 Zea mays HOM05D001571 ORTHO05D002889 7.0e-23 111.3 124 50.0
HPP92_001427 Vanilla planifolia HOM05D001571 ORTHO05D002889 1.2e-22 110.5 146 42.5
Peaxi162Scf00015g02223 Petunia axillaris HOM05D001571 ORTHO05D002889 1.2e-19 100.5 175 37.7
Mapoly0053s0009 Marchantia polymorpha HOM05D001571 ORTHO05D002889 1.4e-18 97.1 123 45.5
AagrBONN_evm.TU.Sc2ySwM_369.561 Anthoceros agrestis HOM05D001571 ORTHO05D002889 1.7e-16 90.1 122 45.1
FvH4_6g16400 Fragaria vesca HOM05D001571 ORTHO05D002889 3.9e-13 79.0 75 54.7
CARHR057340 Cardamine hirsuta HOM05D001571 ORTHO05D002889 1.6e-11 73.6 124 35.5
Os05g0115900 Oryza sativa ssp. japonica HOM05D001571 ORTHO05D002889 1.6e-11 73.6 72 55.6
AT1G65590 Arabidopsis thaliana HOM05D001571 ORTHO05D002889 5.2e-10 68.6 124 33.1
Thhalv10018379m.g Eutrema salsugineum HOM05D001571 ORTHO05D002889 5.2e-10 68.6 124 33.9
AUR62006602 Chenopodium quinoa HOM05D001571 ORTHO05D002889 1.5e-09 67.0 124 34.7
AL2G22550 Arabidopsis lyrata HOM05D001571 ORTHO05D002889 2.6e-09 66.2 124 33.1
Os01g0891000 Oryza sativa ssp. japonica HOM05D001571 ORTHO05D002889 2.6e-09 66.2 124 33.9
FAN14G5176 Fragaria x ananassa HOM05D001571 ORTHO05D002889 3.4e-09 65.9 53 62.3
C06p39120 Brassica napus HOM05D001571 ORTHO05D002889 4.4e-09 65.5 124 32.3
BolC6t39005H Brassica oleracea HOM05D001571 ORTHO05D002889 4.4e-09 65.5 124 32.3
A07p32900 Brassica napus HOM05D001571 ORTHO05D002889 5.8e-09 65.1 157 31.8
BraA07t30916Z Brassica rapa HOM05D001571 ORTHO05D002889 5.8e-09 65.1 157 31.8
Sp5g20510 Schrenkiella parvula HOM05D001571 ORTHO05D002889 9.8e-09 64.3 124 32.3
SEGI_20989 Sequoiadendron giganteum HOM05D001571 ORTHO05D002889 1.3e-08 63.9 133 33.1
Aqoxy1G01860 Aquilegia oxysepala HOM05D001571 ORTHO05D002889 1.7e-08 63.5 146 32.9
Nn7g37464 Nelumbo nucifera HOM05D001571 ORTHO05D002889 2.9e-08 62.8 131 33.6
Carub.0002s1142 Capsella rubella HOM05D001571 ORTHO05D002889 3.7e-08 62.4 124 31.5
Zm00001eb288150 Zea mays HOM05D001571 ORTHO05D002889 4.9e-08 62.0 124 37.1
CAN.G691.21 Capsicum annuum HOM05D001571 ORTHO05D002889 6.4e-08 61.6 138 32.6
Os05g0415700 Oryza sativa ssp. japonica HOM05D001571 ORTHO05D002889 6.4e-08 61.6 159 30.2
Pp3c12_14920 Physcomitrium patens HOM05D001571 ORTHO05D002889 6.4e-08 61.6 123 37.4
Thecc.05G131200 Theobroma cacao HOM05D001571 ORTHO05D002889 1.1e-07 60.8 124 35.5
EL10Ac4g10043 Beta vulgaris HOM05D001571 ORTHO05D002889 1.4e-07 60.5 155 32.9
Atru.chr10.129 Acer truncatum HOM05D001571 ORTHO05D002889 2.4e-07 59.7 124 29.8
Atru.chr10.130 Acer truncatum HOM05D001571 ORTHO05D002889 2.4e-07 59.7 124 29.8
Atru.chr10.132 Acer truncatum HOM05D001571 ORTHO05D002889 2.4e-07 59.7 124 29.8
ECA238G4792 Erigeron canadensis HOM05D000915 ORTHO05D004661 3.2e-07 59.3 127 34.6
Gohir.A01G123900 Gossypium hirsutum HOM05D001571 ORTHO05D002889 3.2e-07 59.3 153 34.0
MSTRG.9233 Avicennia marina HOM05D001571 ORTHO05D002889 4.1e-07 58.9 135 34.8
Gorai.002G136400 Gossypium raimondii HOM05D001571 ORTHO05D002889 4.1e-07 58.9 153 33.3
Nn1g09497 Nelumbo nucifera HOM05D001571 ORTHO05D002889 4.1e-07 58.9 129 34.1
COL.COLO4_22777 Corchorus olitorius HOM05D001571 ORTHO05D002889 5.4e-07 58.5 122 34.4
DCAR_023905 Daucus carota HOM05D001571 ORTHO05D002889 5.4e-07 58.5 124 36.3
Gohir.D01G111601 Gossypium hirsutum HOM05D001571 ORTHO05D002889 5.4e-07 58.5 153 33.3
Manes.12G000500 Manihot esculenta HOM05D001571 ORTHO05D002889 5.4e-07 58.5 129 33.3
CBR_g32277 Chara braunii HOM05D001571 ORTHO05D002889 7.1e-07 58.2 163 27.0
Migut.F02077 Erythranthe guttata HOM05D001571 ORTHO05D002889 7.1e-07 58.2 124 33.1
SalBow1G3071 Salvia bowleyana HOM05D001571 ORTHO05D002889 7.1e-07 58.2 135 32.6
Peaxi162Scf29894g00007 Petunia axillaris HOM05D001571 ORTHO05D002889 1.2e-06 57.4 138 31.2
Ciclev10014808m.g Citrus clementina HOM05D001571 ORTHO05D002889 1.6e-06 57.0 130 31.5
Nitab4.5_0001653g0030 Nicotiana tabacum HOM05D001571 ORTHO05D002889 1.6e-06 57.0 130 31.5
Nitab4.5_0001677g0100 Nicotiana tabacum HOM05D001571 ORTHO05D002889 1.6e-06 57.0 149 30.2
SMO239G0002 Selaginella moellendorffii HOM05D001571 ORTHO05D002889 1.6e-06 57.0 123 33.3
Cc00_g25060 Coffea canephora HOM05D001571 ORTHO05D002889 2.1e-06 56.6 149 32.9
Aa31LG2G2560 Aethionema arabicum HOM05D001571 ORTHO05D002889 2.7e-06 56.2 141 32.6
Ah.16g107550 Amaranthus hybridus HOM05D001571 ORTHO05D002889 2.7e-06 56.2 40 67.5
AagrBONN_evm.TU.Sc2ySwM_228.3771 Anthoceros agrestis HOM05D001571 ORTHO05D002889 2.7e-06 56.2 128 32.0
SalBow1G6620 Salvia bowleyana HOM05D001571 ORTHO05D002889 2.7e-06 56.2 135 31.9
Sed0017377 Sechium edule HOM05D001571 ORTHO05D002889 2.7e-06 56.2 44 68.2
Cfa002310 Carpinus fangiana HOM05D001571 ORTHO05D002889 3.5e-06 55.8 125 33.6
Lj1C640G1 Lonicera japonica HOM05D001571 ORTHO05D002889 4.6e-06 55.5 133 27.1
SMO134G0264 Selaginella moellendorffii HOM05D001571 ORTHO05D005985 6.0e-06 55.1 124 31.5
Lj1C573G6 Lonicera japonica HOM05D001571 ORTHO05D002889 7.8e-06 54.7 124 32.3
PSO675G5555 Papaver somniferum HOM05D001571 ORTHO05D002889 7.8e-06 54.7 124 31.5
Rhsim09G0127900 Rhododendron simsii HOM05D001571 ORTHO05D002889 7.8e-06 54.7 125 30.4
SMO232G0036 Selaginella moellendorffii HOM05D001571 ORTHO05D002889 7.8e-06 54.7 177 27.7


User provided reference genes

Program Settings