Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 4.9e-21 104.0 71 100.0
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 9.9e-14 79.7 70 58.6
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.9e-12 75.5 70 55.7
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 1.9e-12 75.5 39 84.6
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.4e-12 75.1 39 84.6
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 2.4e-12 75.1 39 84.6
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 3.2e-12 74.7 39 79.5
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 3.2e-12 74.7 39 79.5
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 3.2e-12 74.7 39 82.1
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 5.4e-12 73.9 39 82.1
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 5.4e-12 73.9 39 79.5
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 7.1e-12 73.6 39 82.1
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 7.1e-12 73.6 39 79.5
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 9.2e-12 73.2 39 79.5
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 9.2e-12 73.2 39 76.9
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 9.2e-12 73.2 39 76.9
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 9.2e-12 73.2 39 76.9
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 9.2e-12 73.2 39 76.9
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 1.2e-11 72.8 39 76.9
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.2e-11 72.8 39 76.9
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 1.2e-11 72.8 39 79.5
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.6e-11 72.4 39 76.9
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 2.1e-11 72.0 39 74.4
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 2.1e-11 72.0 39 79.5
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 2.7e-11 71.6 39 79.5
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 2.7e-11 71.6 39 79.5
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 2.7e-11 71.6 39 79.5
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 2.7e-11 71.6 39 79.5
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.7e-11 71.6 39 79.5
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 2.7e-11 71.6 39 76.9
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 2.7e-11 71.6 39 76.9
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.7e-11 71.6 39 79.5
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 2.7e-11 71.6 39 76.9
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 3.5e-11 71.2 39 76.9
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 3.5e-11 71.2 39 74.4
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 6.0e-11 70.5 39 79.5
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 6.0e-11 70.5 39 79.5
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 6.0e-11 70.5 39 79.5
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 6.0e-11 70.5 39 79.5
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 6.0e-11 70.5 39 79.5
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 7.8e-11 70.1 39 76.9
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 7.8e-11 70.1 39 76.9
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 1.0e-10 69.7 39 71.8
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.0e-10 69.7 39 74.4
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.0e-10 69.7 39 74.4
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.3e-10 69.3 39 76.9
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.3e-10 69.3 39 76.9
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.3e-10 69.3 39 76.9
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.3e-10 69.3 39 76.9
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.3e-10 69.3 39 76.9
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.7e-10 68.9 39 74.4
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 1.7e-10 68.9 39 74.4
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.7e-10 68.9 39 79.5
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.7e-10 68.9 39 74.4
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 2.3e-10 68.6 39 74.4
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.3e-10 68.6 39 76.9
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 2.3e-10 68.6 39 74.4
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 2.3e-10 68.6 39 74.4
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 2.3e-10 68.6 39 71.8
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.3e-10 68.6 39 69.2
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 3.0e-10 68.2 39 71.8
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 3.0e-10 68.2 39 74.4
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 3.9e-10 67.8 39 74.4
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 5.1e-10 67.4 39 66.7
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 5.1e-10 67.4 39 71.8
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 5.1e-10 67.4 39 69.2
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 6.6e-10 67.0 39 69.2
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 8.6e-10 66.6 39 71.8
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 8.6e-10 66.6 39 74.4
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 8.6e-10 66.6 39 74.4
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 8.6e-10 66.6 39 74.4
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 1.1e-09 66.2 39 69.2
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 1.1e-09 66.2 39 69.2
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.1e-09 66.2 35 80.0
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.1e-09 66.2 39 66.7
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.1e-09 66.2 39 66.7
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.5e-09 65.9 39 66.7
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.9e-09 65.5 39 71.8
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.9e-09 65.5 39 69.2
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.9e-09 65.5 39 66.7
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 2.5e-09 65.1 39 64.1
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.5e-09 65.1 39 66.7
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 3.3e-09 64.7 39 69.2
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.3e-09 64.7 39 69.2
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 3.3e-09 64.7 39 69.2
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 4.3e-09 64.3 39 71.8
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 4.3e-09 64.3 39 64.1
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.3e-09 64.3 39 64.1
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 5.6e-09 63.9 39 69.2
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 7.3e-09 63.5 39 69.2
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 7.3e-09 63.5 39 66.7
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 7.3e-09 63.5 39 69.2
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 7.3e-09 63.5 38 71.1
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 7.3e-09 63.5 39 69.2
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 9.5e-09 63.2 35 77.1
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 9.5e-09 63.2 39 69.2
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 9.5e-09 63.2 38 68.4
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.2e-08 62.8 39 69.2
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 1.6e-08 62.4 39 66.7
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 1.6e-08 62.4 39 64.1
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 1.6e-08 62.4 39 66.7
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 2.1e-08 62.0 39 69.2
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 2.1e-08 62.0 39 66.7
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 2.8e-08 61.6 41 68.3
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 2.8e-08 61.6 39 66.7
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 2.8e-08 61.6 39 64.1
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 3.6e-08 61.2 39 66.7
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 6.2e-08 60.5 39 61.5
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 6.2e-08 60.5 39 61.5
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 6.2e-08 60.5 39 61.5
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 8.1e-08 60.1 39 64.1
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.1e-07 59.7 39 59.0
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 1.1e-07 59.7 39 64.1
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 3.1e-07 58.2 38 65.8
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.0e-07 57.8 39 61.5
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.0e-07 57.8 39 61.5
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.0e-07 57.8 39 61.5
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 5.2e-07 57.4 39 61.5
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 5.2e-07 57.4 39 61.5
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 8.9e-07 56.6 38 60.5
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.2e-06 56.2 39 61.5
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 1.2e-06 56.2 39 56.4
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 2.6e-06 55.1 36 63.9
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 2.6e-06 55.1 36 63.9
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.6e-06 55.1 36 63.9
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.6e-06 55.1 39 59.0
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 3.4e-06 54.7 39 56.4
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 3.4e-06 54.7 38 60.5
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.8e-06 53.9 39 59.0


User provided reference genes

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