Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c45345 Carica papaya HOM05D003293 ORTHO05D005060 2.0e-101 372.5 196 100.0
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 1.7e-68 263.1 147 93.9
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 3.0e-68 262.3 147 93.2
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.5e-67 260.0 147 91.2
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 1.5e-67 260.0 147 91.8
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 2.5e-67 259.2 147 91.8
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 4.3e-67 258.5 147 90.5
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 5.6e-67 258.1 147 89.8
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 7.3e-67 257.7 147 91.8
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 7.3e-67 257.7 147 91.8
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 7.3e-67 257.7 147 90.5
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 7.3e-67 257.7 147 90.5
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 9.5e-67 257.3 146 91.1
RcHm_v2.0_Chr5g0023561 Rosa chinensis HOM05D003293 ORTHO05D005060 9.5e-67 257.3 147 90.5
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 1.6e-66 256.5 147 89.8
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 2.1e-66 256.1 146 91.1
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 2.1e-66 256.1 146 90.4
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 2.8e-66 255.8 146 90.4
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 2.8e-66 255.8 146 90.4
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 2.8e-66 255.8 146 90.4
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.8e-66 255.8 147 89.1
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 3.6e-66 255.4 146 89.7
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 3.6e-66 255.4 146 89.7
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 3.6e-66 255.4 146 89.7
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 3.6e-66 255.4 146 89.7
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 3.6e-66 255.4 147 90.5
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 4.7e-66 255.0 147 89.8
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 4.7e-66 255.0 147 89.8
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 4.7e-66 255.0 147 89.8
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 4.7e-66 255.0 146 90.4
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 4.7e-66 255.0 146 90.4
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 4.7e-66 255.0 146 90.4
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 4.7e-66 255.0 146 89.0
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 6.2e-66 254.6 147 90.5
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 6.2e-66 254.6 146 90.4
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 6.2e-66 254.6 146 89.7
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 6.2e-66 254.6 146 89.7
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 6.2e-66 254.6 147 89.8
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 8.1e-66 254.2 147 89.8
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 8.1e-66 254.2 147 89.1
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 8.1e-66 254.2 146 89.7
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 1.1e-65 253.8 147 89.1
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 1.4e-65 253.4 147 89.1
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 1.4e-65 253.4 146 89.0
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.8e-65 253.1 146 89.0
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 1.8e-65 253.1 147 87.8
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.8e-65 253.1 146 89.0
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 1.8e-65 253.1 147 88.4
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.3e-65 252.7 147 88.4
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 2.3e-65 252.7 147 91.2
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 2.3e-65 252.7 147 91.2
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 3.1e-65 252.3 146 89.0
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 3.1e-65 252.3 147 89.1
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 4.0e-65 251.9 146 88.4
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 4.0e-65 251.9 146 89.7
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 4.0e-65 251.9 146 89.7
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 4.0e-65 251.9 147 89.1
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 5.2e-65 251.5 147 88.4
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 5.2e-65 251.5 147 88.4
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 6.8e-65 251.1 146 87.7
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 6.8e-65 251.1 147 89.8
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 6.8e-65 251.1 147 89.1
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 8.9e-65 250.8 147 87.1
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 8.9e-65 250.8 146 88.4
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 1.2e-64 250.4 146 88.4
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 1.2e-64 250.4 146 89.7
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 1.2e-64 250.4 147 89.8
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 1.2e-64 250.4 146 88.4
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 1.2e-64 250.4 147 88.4
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.5e-64 250.0 146 88.4
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 1.5e-64 250.0 146 89.0
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.5e-64 250.0 147 88.4
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.5e-64 250.0 147 88.4
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 1.5e-64 250.0 147 89.1
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.0e-64 249.6 146 88.4
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.0e-64 249.6 146 88.4
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 2.0e-64 249.6 147 88.4
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 2.0e-64 249.6 146 87.7
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 3.4e-64 248.8 146 89.0
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 3.4e-64 248.8 147 89.8
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 4.4e-64 248.4 147 87.8
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 4.4e-64 248.4 146 87.7
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 4.4e-64 248.4 147 88.4
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 4.4e-64 248.4 148 88.5
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 5.8e-64 248.1 146 87.7
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 5.8e-64 248.1 147 87.1
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 7.5e-64 247.7 147 89.1
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 7.5e-64 247.7 147 87.1
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 7.5e-64 247.7 147 89.8
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 1.3e-63 246.9 147 86.4
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 1.3e-63 246.9 146 86.3
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 1.3e-63 246.9 147 87.1
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 1.3e-63 246.9 147 89.8
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 1.3e-63 246.9 147 89.8
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 1.7e-63 246.5 145 86.9
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.7e-63 246.5 149 88.6
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 1.7e-63 246.5 147 87.1
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 2.2e-63 246.1 147 86.4
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 2.2e-63 246.1 147 85.7
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 2.9e-63 245.7 147 86.4
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 3.7e-63 245.4 147 87.1
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 3.7e-63 245.4 147 88.4
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 3.7e-63 245.4 147 86.4
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 6.4e-63 244.6 147 87.1
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 8.3e-63 244.2 147 87.1
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 8.3e-63 244.2 147 87.8
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 8.3e-63 244.2 148 88.5
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 8.3e-63 244.2 147 85.7
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 1.4e-62 243.4 147 85.7
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 1.4e-62 243.4 149 87.2
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 1.9e-62 243.0 147 86.4
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 1.9e-62 243.0 147 87.8
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 3.2e-62 242.3 142 88.0
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 3.2e-62 242.3 147 88.4
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 4.1e-62 241.9 147 87.1
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 5.4e-62 241.5 147 86.4
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 7.1e-62 241.1 148 87.2
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 9.2e-62 240.7 147 86.4
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.7e-61 239.2 146 84.9
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 6.0e-61 238.0 147 83.7
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 6.0e-61 238.0 147 83.0
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 7.8e-61 237.7 147 85.7
arahy.Tifrunner.gnm1.ann1.59CN8W Arachis hypogaea HOM05D003293 ORTHO05D005060 1.0e-60 237.3 147 85.0
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 1.0e-60 237.3 147 83.7
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 1.7e-60 236.5 175 74.3
Rhsim10G0161300 Rhododendron simsii HOM05D003293 ORTHO05D005060 3.0e-60 235.7 147 84.4
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 3.9e-60 235.3 147 82.3
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 6.6e-60 234.6 147 84.4
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 8.6e-60 234.2 147 82.3
Eucgr.L02511 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.6e-58 229.9 138 84.1
HPP92_020646 Vanilla planifolia HOM05D003293 ORTHO05D005060 3.6e-58 228.8 147 83.0
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 1.8e-57 226.5 148 81.1
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 2.4e-57 226.1 147 80.3
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 2.4e-57 226.1 217 61.8
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 2.2e-55 219.5 147 80.3
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 4.6e-53 211.8 147 72.1
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 2.3e-52 209.5 147 74.8
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 1.5e-51 206.8 146 71.2
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 1.1e-49 200.7 146 70.5
Pp3c1_34170 Physcomitrium patens HOM05D003293 ORTHO05D005060 1.1e-49 200.7 146 70.5
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 1.8e-49 199.9 133 81.2
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 2.4e-49 199.5 147 70.1
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 1.5e-48 196.8 116 87.9
Gohir.D13G220550 Gossypium hirsutum HOM05D003293 ORTHO05D022137 4.4e-48 195.3 133 79.7
Zm00001eb213620 Zea mays HOM05D003293 ORTHO05D005060 2.9e-47 192.6 126 78.6
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 2.4e-46 189.5 147 66.7
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 3.0e-44 182.6 146 61.6
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 3.0e-44 182.6 147 70.1
BcaB02g06616 Brassica carinata HOM05D003293 ORTHO05D005060 1.1e-43 180.6 134 72.4
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 1.5e-43 180.3 146 63.0
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 4.3e-43 178.7 146 64.4
Actinidia26213 Actinidia chinensis HOM05D003293 ORTHO05D005060 6.4e-39 164.9 97 84.5
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 2.5e-35 152.9 151 53.6
Hma1.2p1_0142F.1_g064350 Hydrangea macrophylla HOM05D003293 ORTHO05D022137 2.5e-30 136.3 77 89.6
CSS0007137 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D022137 6.0e-29 131.7 77 87.0
CSS0010168 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 7.1e-22 108.2 79 75.9
TAR629G2219 Trochodendron aralioides HOM05D003293 ORTHO05D005060 4.6e-21 105.5 60 90.0
CSS0006105 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 1.3e-20 104.0 60 90.0
Rhsim01G0231900 Rhododendron simsii HOM05D003293 ORTHO05D022137 2.3e-20 103.2 59 86.4
RcHm_v2.0_Chr3g0493461 Rosa chinensis HOM05D003293 ORTHO05D013446 2.3e-20 103.2 83 69.9
Sc08g0001770 Simmondsia chinensis HOM05D003293 ORTHO05D005060 6.7e-20 101.7 60 86.7
RcHm_v2.0_Chr4g0402021 Rosa chinensis HOM05D003293 ORTHO05D013446 1.3e-18 97.4 56 89.3
BcaC05g25580 Brassica carinata HOM05D003293 ORTHO05D005060 2.8e-18 96.3 60 83.3
Cfa025892 Carpinus fangiana HOM05D003293 ORTHO05D005060 1.8e-17 93.6 115 47.8
Actinidia24661 Actinidia chinensis HOM05D003293 ORTHO05D005060 2.4e-17 93.2 62 79.0
ATR0810G033 Amborella trichopoda HOM05D003293 ORTHO05D005060 4.1e-17 92.4 59 83.1
CsaV3_3G034300 Cucumis sativus L. HOM05D003293 ORTHO05D022137 5.3e-17 92.0 61 73.8
Haze_27383 Corylus avellana HOM05D003293 ORTHO05D044783 6.9e-17 91.7 134 40.3
Rhsim01G0232100 Rhododendron simsii HOM05D003293 ORTHO05D013446 6.9e-17 91.7 55 87.3
arahy.Tifrunner.gnm1.ann1.K3F60Q Arachis hypogaea HOM05D003293 ORTHO05D005060 3.1e-09 66.2 60 63.3
Hma1.2p1_0142F.1_g064360 Hydrangea macrophylla HOM05D003293 ORTHO05D022137 1.9e-06 57.0 33 87.9


User provided reference genes

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