Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 7.1e-28 127.1 62 100.0
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 8.4e-21 103.6 62 83.9
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.9e-20 102.4 62 79.0
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 5.4e-20 100.9 61 77.0
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 9.2e-20 100.1 61 75.4
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.6e-19 99.4 62 80.6
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.1e-19 99.0 62 77.4
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 6.0e-19 97.4 62 74.2
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 7.8e-19 97.1 62 79.0
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 4.3e-17 91.3 62 74.2
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 4.3e-17 91.3 62 67.7
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 1.6e-16 89.4 62 74.2
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.6e-16 89.4 62 71.0
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 2.1e-16 89.0 62 67.7
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 2.8e-16 88.6 62 71.0
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.8e-16 88.6 62 71.0
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.8e-16 88.6 62 71.0
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 4.7e-16 87.8 62 69.4
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 4.7e-16 87.8 62 71.0
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 6.2e-16 87.4 62 66.1
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 6.2e-16 87.4 62 69.4
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 8.1e-16 87.0 62 66.1
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 8.1e-16 87.0 62 61.3
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.4e-15 86.3 62 69.4
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 1.8e-15 85.9 62 67.7
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 2.4e-15 85.5 62 67.7
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 4.0e-15 84.7 62 67.7
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 8.9e-15 83.6 62 61.3
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.2e-14 83.2 62 64.5
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 2.0e-14 82.4 62 54.8
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 2.0e-14 82.4 62 62.9
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 4.4e-14 81.3 62 56.5
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 7.6e-14 80.5 62 59.7
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 9.9e-14 80.1 62 69.4
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.7e-13 79.3 62 61.3
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.2e-13 79.0 62 54.8
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 3.8e-13 78.2 62 54.8
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 3.8e-13 78.2 51 74.5
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 4.9e-13 77.8 62 56.5
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 6.4e-13 77.4 62 66.1
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-12 76.6 62 53.2
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-12 76.6 62 53.2
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-12 76.6 62 53.2
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 1.1e-12 76.6 62 53.2
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 1.1e-12 76.6 62 53.2
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 2.4e-12 75.5 62 59.7
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 3.2e-12 75.1 61 62.3
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 3.2e-12 75.1 62 54.8
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 5.4e-12 74.3 62 58.1
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 5.4e-12 74.3 62 58.1
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 7.1e-12 73.9 62 62.9
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 7.1e-12 73.9 62 58.1
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 7.1e-12 73.9 62 58.1
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 9.3e-12 73.6 62 51.6
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 9.3e-12 73.6 62 67.7
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-11 73.2 62 56.5
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 1.2e-11 73.2 62 51.6
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 1.2e-11 73.2 62 56.5
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 1.2e-11 73.2 62 61.3
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 1.6e-11 72.8 62 58.1
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 2.1e-11 72.4 62 48.4
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 2.1e-11 72.4 62 48.4
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 2.7e-11 72.0 62 58.1
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 2.7e-11 72.0 62 58.1
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 2.7e-11 72.0 62 58.1
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 2.7e-11 72.0 62 58.1
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 2.7e-11 72.0 62 56.5
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 3.5e-11 71.6 62 54.8
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 4.6e-11 71.2 62 50.0
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 4.6e-11 71.2 62 56.5
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 6.0e-11 70.9 53 64.2
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 6.0e-11 70.9 62 56.5
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 7.8e-11 70.5 62 53.2
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 7.8e-11 70.5 62 59.7
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.0e-10 70.1 62 53.2
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 1.0e-10 70.1 61 54.1
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 1.0e-10 70.1 62 53.2
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.3e-10 69.7 62 53.2
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-10 69.3 62 46.8
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.7e-10 69.3 62 54.8
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 2.3e-10 68.9 62 46.8
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 2.3e-10 68.9 62 51.6
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 2.3e-10 68.9 62 46.8
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 2.3e-10 68.9 62 51.6
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 2.3e-10 68.9 62 53.2
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 3.0e-10 68.6 62 51.6
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 3.9e-10 68.2 62 48.4
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.9e-10 68.2 62 56.5
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 5.1e-10 67.8 61 52.5
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 5.1e-10 67.8 61 52.5
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 8.7e-10 67.0 62 51.6
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 8.7e-10 67.0 62 56.5
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 8.7e-10 67.0 62 51.6
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 8.7e-10 67.0 62 51.6
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 8.7e-10 67.0 62 54.8
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.1e-09 66.6 62 54.8
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.1e-09 66.6 62 54.8
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.5e-09 66.2 61 55.7
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 1.5e-09 66.2 62 54.8
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 1.9e-09 65.9 62 50.0
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 1.9e-09 65.9 62 58.1
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 2.5e-09 65.5 62 51.6
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 4.3e-09 64.7 62 54.8
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 7.3e-09 63.9 62 46.8
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 9.6e-09 63.5 62 48.4
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 1.6e-08 62.8 60 56.7
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 3.6e-08 61.6 62 50.0
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 3.6e-08 61.6 62 50.0
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 4.8e-08 61.2 62 56.5
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 8.1e-08 60.5 62 46.8
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 8.1e-08 60.5 61 50.8
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 8.1e-08 60.5 62 53.2
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-07 60.1 60 50.0
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.1e-07 60.1 55 47.3
A05p35990 Brassica napus HOM05D004137 ORTHO05D004804 2.4e-07 58.9 61 44.3
BraA05t22405Z Brassica rapa HOM05D004137 ORTHO05D004804 2.4e-07 58.9 61 44.3
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.4e-07 58.9 60 56.7
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 3.1e-07 58.5 62 51.6
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 3.1e-07 58.5 60 55.0
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.2e-06 56.6 62 50.0
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.2e-06 56.6 62 50.0
AL3G25410 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.5e-06 56.2 60 43.3
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.5e-06 56.2 62 50.0
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 3.4e-06 55.1 62 50.0
CARHR088170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 5.8e-06 54.3 62 43.5
AT3G13500 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 9.9e-06 53.5 60 40.0
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 9.9e-06 53.5 60 50.0
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 9.9e-06 53.5 61 50.8


User provided reference genes

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