Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44787 Carica papaya HOM05D002875 ORTHO05D003215 1.7e-88 329.3 165 100.0
Haze_07529 Corylus avellana HOM05D002875 ORTHO05D003215 4.0e-58 228.4 149 76.5
Cfa019158 Carpinus fangiana HOM05D002875 ORTHO05D003215 7.5e-57 224.2 149 74.5
COL.COLO4_30079 Corchorus olitorius HOM05D002875 ORTHO05D003215 4.9e-56 221.5 149 71.8
Sabra15G0103500 Salix brachista HOM05D002875 ORTHO05D003215 4.9e-56 221.5 149 73.8
Potri.015G079000 Populus trichocarpa HOM05D002875 ORTHO05D003215 6.4e-56 221.1 149 73.2
QL10p009524 Quercus lobata HOM05D002875 ORTHO05D003215 1.4e-55 219.9 166 68.7
CiPaw.11G024100 Carya illinoinensis HOM05D002875 ORTHO05D003215 1.9e-55 219.5 166 66.9
Duzib205G0575 Durio zibethinus HOM05D002875 ORTHO05D003215 2.4e-55 219.2 166 66.3
MBI16_g05467_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 2.4e-55 219.2 158 65.8
Potri.012G087400 Populus trichocarpa HOM05D002875 ORTHO05D003215 2.4e-55 219.2 156 69.9
Dinv20633 Davidia involucrata HOM05D002875 ORTHO05D003215 4.1e-55 218.4 149 73.8
DCAR_016049 Daucus carota HOM05D002875 ORTHO05D003215 5.4e-55 218.0 155 65.8
Gohir.D12G276200 Gossypium hirsutum HOM05D002875 ORTHO05D003215 9.2e-55 217.2 148 72.3
Gorai.008G296700 Gossypium raimondii HOM05D002875 ORTHO05D003215 9.2e-55 217.2 148 72.3
Gohir.A12G275500 Gossypium hirsutum HOM05D002875 ORTHO05D003215 2.0e-54 216.1 148 71.6
Thecc.03G015100 Theobroma cacao HOM05D002875 ORTHO05D003215 2.0e-54 216.1 149 71.8
Ciclev10018615m.g Citrus clementina HOM05D002875 ORTHO05D003215 2.7e-54 215.7 156 68.6
Migut.O00118 Erythranthe guttata HOM05D002875 ORTHO05D003215 1.0e-53 213.8 166 67.5
Lj3A20G43 Lonicera japonica HOM05D002875 ORTHO05D003215 1.3e-53 213.4 156 67.3
Lj1g0027129 Lotus japonicus HOM05D002875 ORTHO05D003215 3.0e-53 212.2 156 66.0
CiPaw.12G028200 Carya illinoinensis HOM05D002875 ORTHO05D003215 6.6e-53 211.1 166 66.3
SalBow5G4119 Salvia bowleyana HOM05D002875 ORTHO05D003215 6.6e-53 211.1 156 69.9
TAR629G1476 Trochodendron aralioides HOM05D002875 ORTHO05D003215 1.5e-52 209.9 156 67.3
TWI23G1153 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 1.9e-52 209.5 166 64.5
TWI39G0667 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 1.9e-52 209.5 166 64.5
Eucgr.K02827 Eucalyptus grandis HOM05D002875 ORTHO05D003215 2.5e-52 209.1 156 66.7
PSO063G4348 Papaver somniferum HOM05D002875 ORTHO05D003215 9.5e-52 207.2 149 69.1
PSO782G2041 Papaver somniferum HOM05D002875 ORTHO05D003215 9.5e-52 207.2 149 69.1
PSO832G2157 Papaver somniferum HOM05D002875 ORTHO05D003215 9.5e-52 207.2 149 69.1
PGSC0003DMG400018158 Solanum tuberosum HOM05D002875 ORTHO05D003215 1.2e-51 206.8 148 67.6
SGA_v2.0_scaffold25G10830 Striga asiatica HOM05D002875 ORTHO05D003215 1.6e-51 206.5 167 63.5
Manes.06G106500 Manihot esculenta HOM05D002875 ORTHO05D003215 2.8e-51 205.7 166 65.1
CSS0028386 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 3.6e-51 205.3 149 66.4
Solyc03g112760.3 Solanum lycopersicum HOM05D002875 ORTHO05D003215 4.7e-51 204.9 148 66.9
Sopen03g031840 Solanum pennellii HOM05D002875 ORTHO05D003215 4.7e-51 204.9 148 66.9
PGR044G0014 Punica granatum HOM05D002875 ORTHO05D003215 6.2e-51 204.5 156 63.5
FAN13G1897 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.1e-50 203.8 149 67.1
CAN.G2294.1 Capsicum annuum HOM05D002875 ORTHO05D003215 6.8e-50 201.1 148 66.2
Nn3g16811 Nelumbo nucifera HOM05D002875 ORTHO05D003215 7.5e-49 197.6 148 64.2
Medtr3g077550 Medicago truncatula HOM05D002875 ORTHO05D003215 9.8e-49 197.2 152 64.5
RcHm_v2.0_Chr7g0193221 Rosa chinensis HOM05D002875 ORTHO05D003215 9.8e-49 197.2 149 66.4
Ca_26884_v3 Cicer arietinum L. HOM05D002875 ORTHO05D003215 1.3e-48 196.8 148 66.2
Aqoxy3G02874 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 3.7e-48 195.3 149 65.1
VMungo1309G1778 Vigna mungo HOM05D002875 ORTHO05D003215 4.9e-48 194.9 156 62.8
vmacro16624 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 8.3e-48 194.1 166 60.8
Glyma.04G185000 Glycine max HOM05D002875 ORTHO05D003215 1.4e-47 193.4 156 60.3
MD06G1171200 Malus domestica HOM05D002875 ORTHO05D003215 3.2e-47 192.2 148 65.5
FvH4_5g05550 Fragaria vesca HOM05D002875 ORTHO05D003215 4.1e-47 191.8 149 65.8
FAN18G4336 Fragaria x ananassa HOM05D002875 ORTHO05D003215 4.1e-47 191.8 149 65.8
Prupe.5G170900 Prunus persica HOM05D002875 ORTHO05D003215 4.1e-47 191.8 150 65.3
Phvul.009G176900 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 7.1e-47 191.0 156 62.8
AL5G27550 Arabidopsis lyrata HOM05D002875 ORTHO05D003215 2.1e-46 189.5 163 58.3
AT3G48200 Arabidopsis thaliana HOM05D002875 ORTHO05D003215 2.7e-46 189.1 163 58.3
QL10p010250 Quercus lobata HOM05D002875 ORTHO05D003215 2.7e-46 189.1 148 65.5
CANSAT80G1146 Cannabis sativa HOM05D002875 ORTHO05D003215 3.5e-46 188.7 149 63.1
Atru.chr9.2501 Acer truncatum HOM05D002875 ORTHO05D003215 1.0e-45 187.2 134 70.9
Sp5g13820 Schrenkiella parvula HOM05D002875 ORTHO05D003215 1.0e-45 187.2 163 59.5
Psat0s2176g0120 Pisum sativum HOM05D002875 ORTHO05D003215 1.3e-45 186.8 149 63.1
C08p23160 Brassica napus HOM05D002875 ORTHO05D003215 2.3e-45 186.0 163 57.1
Sc04g0001700 Simmondsia chinensis HOM05D002875 ORTHO05D003215 3.0e-45 185.7 148 61.5
BcaC07g39302 Brassica carinata HOM05D002875 ORTHO05D003215 3.9e-45 185.3 163 57.1
BolC8t49950H Brassica oleracea HOM05D002875 ORTHO05D003215 3.9e-45 185.3 163 57.1
BcaB01g00838 Brassica carinata HOM05D002875 ORTHO05D003215 5.1e-45 184.9 163 57.1
Carub.0005s1433 Capsella rubella HOM05D002875 ORTHO05D003215 8.6e-45 184.1 163 57.7
Rhsim12G0166000 Rhododendron simsii HOM05D002875 ORTHO05D003215 1.1e-44 183.7 149 63.1
Cc04_g12200 Coffea canephora HOM05D002875 ORTHO05D003215 1.5e-44 183.3 148 63.5
Oeu016411.4 Olea europaea HOM05D002875 ORTHO05D003215 1.9e-44 183.0 135 70.4
CARHR156950 Cardamine hirsuta HOM05D002875 ORTHO05D003215 3.3e-44 182.2 163 58.3
Thhalv10010082m.g Eutrema salsugineum HOM05D002875 ORTHO05D003215 4.3e-44 181.8 163 56.4
Lalb_Chr11g0071501 Lupinus albus HOM05D002875 ORTHO05D003215 9.5e-44 180.6 156 60.9
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 3.6e-43 178.7 163 54.6
arahy.Tifrunner.gnm1.ann1.H1PHD7 Arachis hypogaea HOM05D002875 ORTHO05D003215 3.6e-43 178.7 149 62.4
A06p19500 Brassica napus HOM05D002875 ORTHO05D003215 6.2e-43 177.9 163 55.8
BraA06t25029Z Brassica rapa HOM05D002875 ORTHO05D003215 6.2e-43 177.9 163 55.8
HanXRQChr15g0463021 Helianthus annuus HOM05D002875 ORTHO05D003215 6.2e-43 177.9 148 59.5
MSTRG.11469 Avicennia marina HOM05D002875 ORTHO05D003215 1.8e-42 176.4 156 61.5
arahy.Tifrunner.gnm1.ann1.Q9ZI40 Arachis hypogaea HOM05D002875 ORTHO05D003215 2.3e-42 176.0 149 62.4
unitig_26.g9618 Utricularia gibba HOM05D002875 ORTHO05D003215 3.1e-42 175.6 156 57.1
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 3.1e-42 175.6 128 70.3
EL10Ac5g10726 Beta vulgaris HOM05D002875 ORTHO05D003215 4.0e-42 175.3 148 60.8
AUR62030942 Chenopodium quinoa HOM05D002875 ORTHO05D003215 5.2e-42 174.9 166 56.6
HPP92_020270 Vanilla planifolia HOM05D002875 ORTHO05D003215 8.9e-42 174.1 149 58.4
Lsat_1_v5_gn_4_75800 Lactuca sativa HOM05D002875 ORTHO05D003215 2.6e-41 172.6 156 56.4
HanXRQChr09g0272101 Helianthus annuus HOM05D002875 ORTHO05D003215 1.7e-40 169.9 148 56.8
Sed0001364 Sechium edule HOM05D002875 ORTHO05D003215 1.1e-39 167.2 166 53.6
ATR1091G018 Amborella trichopoda HOM05D002875 ORTHO05D003215 1.9e-39 166.4 150 56.7
QL10p009447 Quercus lobata HOM05D002875 ORTHO05D003215 9.2e-39 164.1 133 61.7
QL10p009474 Quercus lobata HOM05D002875 ORTHO05D003215 2.7e-38 162.5 141 63.8
Sed0012471 Sechium edule HOM05D002875 ORTHO05D003215 1.3e-37 160.2 166 51.8
THA.LOC104818213 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 5.1e-37 158.3 156 54.5
MELO3C002277.2 Cucumis melo HOM05D002875 ORTHO05D003215 1.1e-36 157.1 167 50.9
ClCG01G013270 Citrullus lanatus HOM05D002875 ORTHO05D003215 1.5e-36 156.8 166 50.6
QL10p010210 Quercus lobata HOM05D002875 ORTHO05D003215 3.3e-36 155.6 148 58.8
AUR62008190 Chenopodium quinoa HOM05D002875 ORTHO05D003215 4.3e-36 155.2 166 51.8
QL10p009017 Quercus lobata HOM05D002875 ORTHO05D003215 4.3e-36 155.2 146 59.6
CsaV3_1G008630 Cucumis sativus L. HOM05D002875 ORTHO05D003215 2.1e-35 152.9 166 49.4
QL10p009076 Quercus lobata HOM05D002875 ORTHO05D003215 4.0e-34 148.7 137 61.3
QL10p010123 Quercus lobata HOM05D002875 ORTHO05D003215 5.2e-34 148.3 137 60.6
QL10p009141 Quercus lobata HOM05D002875 ORTHO05D003215 1.2e-33 147.1 137 62.8
QL10p009301 Quercus lobata HOM05D002875 ORTHO05D003215 1.2e-33 147.1 160 55.6
QL10p009914 Quercus lobata HOM05D002875 ORTHO05D003215 2.0e-33 146.4 137 60.6
CDE01G0076 Ceratophyllum demersum HOM05D002875 ORTHO05D003215 5.8e-33 144.8 148 52.7
CSS0012171 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 2.9e-32 142.5 106 65.1
CSS0013183 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 2.9e-32 142.5 106 65.1
TPR.G17138 Trifolium pratense HOM05D002875 ORTHO05D003215 3.8e-32 142.1 124 58.9
Os05g0594500 Oryza sativa ssp. japonica HOM05D002875 ORTHO05D003215 1.1e-31 140.6 155 49.7
Hma1.2p1_0149F.1_g066560 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 1.9e-31 139.8 144 51.4
QL10p009338 Quercus lobata HOM05D002875 ORTHO05D003215 2.4e-31 139.4 136 61.8
QL10p009349 Quercus lobata HOM05D002875 ORTHO05D003215 2.4e-31 139.4 136 61.0
Hma1.2p1_0149F.1_g066580 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 7.1e-31 137.9 144 50.7
QL10p008968 Quercus lobata HOM05D002875 ORTHO05D003215 1.6e-30 136.7 94 76.6
ECA232G2272 Erigeron canadensis HOM05D002875 ORTHO05D003215 3.5e-30 135.6 148 48.0
Mapoly0015s0063 Marchantia polymorpha HOM05D002875 ORTHO05D003215 5.6e-28 128.3 150 46.0
Hma1.2p1_0660F.1_g197790 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 7.3e-28 127.9 139 52.5
QL10p009197 Quercus lobata HOM05D002875 ORTHO05D003215 2.8e-27 125.9 149 51.7
Zm00001eb345460 Zea mays HOM05D002875 ORTHO05D003215 8.1e-27 124.4 168 44.0
Cpa.g.sc76.34 Carica papaya HOM05D002875 ORTHO05D003215 3.1e-26 122.5 66 95.5
Hund02758 Selenicereus undatus HOM05D002875 ORTHO05D003215 3.1e-26 122.5 148 48.0
Nitab4.5_0003229g0110 Nicotiana tabacum HOM05D002875 ORTHO05D003215 2.0e-25 119.8 86 65.1
Atru.chr9.2505 Acer truncatum HOM05D002875 ORTHO05D003215 3.4e-25 119.0 120 54.2
QL10p009241 Quercus lobata HOM05D002875 ORTHO05D003215 1.3e-24 117.1 134 49.3
TPR.G28903 Trifolium pratense HOM05D002875 ORTHO05D003215 2.9e-24 115.9 90 64.4
CiPaw.03G055700 Carya illinoinensis HOM05D002875 ORTHO05D003215 4.2e-23 112.1 133 44.4
MBI07_g16948_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 7.1e-23 111.3 140 42.1
Peaxi162Scf00089g01847 Petunia axillaris HOM05D002875 ORTHO05D003215 4.6e-22 108.6 85 60.0
TAR374G0377 Trochodendron aralioides HOM05D002875 ORTHO05D003215 7.9e-22 107.8 136 44.1
AagrBONN_evm.TU.Sc2ySwM_228.3556 Anthoceros agrestis HOM05D002875 ORTHO05D003215 1.8e-21 106.7 132 43.2
CANSAT64G2306 Cannabis sativa HOM05D002875 ORTHO05D003215 3.0e-21 105.9 133 42.9
Dinv25659 Davidia involucrata HOM05D002875 ORTHO05D003215 3.0e-21 105.9 141 41.8
MD09G1010700 Malus domestica HOM05D002875 ORTHO05D003215 5.1e-21 105.1 136 41.2
Pp3c9_12560 Physcomitrium patens HOM05D002875 ORTHO05D003215 5.1e-21 105.1 143 41.3
SEGI_08382 Sequoiadendron giganteum HOM05D002875 ORTHO05D003215 5.1e-21 105.1 135 40.7
Pp3c1_22410 Physcomitrium patens HOM05D002875 ORTHO05D003215 8.7e-21 104.4 122 47.5
Aqoxy5G03377 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 1.5e-20 103.6 133 41.4
SMO343G0006 Selaginella moellendorffii HOM05D002875 ORTHO05D003215 2.5e-20 102.8 117 46.2
Nn4g22316 Nelumbo nucifera HOM05D002875 ORTHO05D003215 3.3e-20 102.4 130 43.8
Pp3c9_870 Physcomitrium patens HOM05D002875 ORTHO05D003215 9.6e-20 100.9 118 44.1
Cfa010845 Carpinus fangiana HOM05D002875 ORTHO05D003215 1.3e-19 100.5 129 41.1
GSVIVG01033091001 Vitis vinifera HOM05D002875 ORTHO05D003215 1.3e-19 100.5 126 42.9
Ciclev10014073m.g Citrus clementina HOM05D002875 ORTHO05D003215 1.6e-19 100.1 133 42.9
AagrBONN_evm.TU.Sc2ySwM_340.781 Anthoceros agrestis HOM05D002875 ORTHO05D003215 2.1e-19 99.8 118 44.1
Haze_03110 Corylus avellana HOM05D002875 ORTHO05D003215 2.1e-19 99.8 133 40.6
Lalb_Chr14g0363441 Lupinus albus HOM05D002875 ORTHO05D003215 2.1e-19 99.8 122 41.0
QL02p071336 Quercus lobata HOM05D002875 ORTHO05D003215 2.1e-19 99.8 129 42.6
Nitab4.5_0007371g0020 Nicotiana tabacum HOM05D002875 ORTHO05D003215 2.8e-19 99.4 91 63.7
Potri.001G330000 Populus trichocarpa HOM05D002875 ORTHO05D003215 3.6e-19 99.0 142 38.0
COL.COLO4_13262 Corchorus olitorius HOM05D002875 ORTHO05D003215 1.1e-18 97.4 133 41.4
Prupe.3G306400 Prunus persica HOM05D002875 ORTHO05D003215 1.8e-18 96.7 128 39.8
arahy.Tifrunner.gnm1.ann1.E3K3GD Arachis hypogaea HOM05D002875 ORTHO05D003215 3.1e-18 95.9 133 37.6
FvH4_6g53530 Fragaria vesca HOM05D002875 ORTHO05D003215 3.1e-18 95.9 124 41.1
FAN14G0620 Fragaria x ananassa HOM05D002875 ORTHO05D003215 3.1e-18 95.9 124 41.1
Manes.17G103200 Manihot esculenta HOM05D002875 ORTHO05D003215 3.1e-18 95.9 139 39.6
Sabra16G0211300 Salix brachista HOM05D002875 ORTHO05D003215 3.1e-18 95.9 163 34.4
Atru.chr6.2572 Acer truncatum HOM05D002875 ORTHO05D003215 5.3e-18 95.1 133 40.6
arahy.Tifrunner.gnm1.ann1.AA3MKH Arachis hypogaea HOM05D002875 ORTHO05D003215 6.9e-18 94.7 133 36.8
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 6.9e-18 94.7 124 41.1
Gohir.D04G076700 Gossypium hirsutum HOM05D002875 ORTHO05D003215 9.0e-18 94.4 133 39.8
Gorai.012G086500 Gossypium raimondii HOM05D002875 ORTHO05D003215 9.0e-18 94.4 133 39.8
Phvul.001G093400 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 9.0e-18 94.4 134 39.6
RcHm_v2.0_Chr2g0175571 Rosa chinensis HOM05D002875 ORTHO05D003215 2.0e-17 93.2 128 39.8
Actinidia04438 Actinidia chinensis HOM05D002875 ORTHO05D003215 4.5e-17 92.0 129 41.1
Gohir.A05G338300 Gossypium hirsutum HOM05D002875 ORTHO05D003215 4.5e-17 92.0 133 39.8
Thecc.04G036100 Theobroma cacao HOM05D002875 ORTHO05D003215 7.6e-17 91.3 133 37.6
Glyma.16G056400 Glycine max HOM05D002875 ORTHO05D003215 9.9e-17 90.9 128 39.8
Glyma.19G091300 Glycine max HOM05D002875 ORTHO05D003215 9.9e-17 90.9 135 38.5
VMungo1383G3279 Vigna mungo HOM05D002875 ORTHO05D003215 9.9e-17 90.9 129 38.8
Duzib187G1197 Durio zibethinus HOM05D002875 ORTHO05D003215 1.1e-15 87.4 121 41.3
THA.LOC104823982 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 6.7e-13 78.2 142 32.4
Rhsim08G0042800 Rhododendron simsii HOM05D002875 ORTHO05D003215 2.5e-12 76.3 153 34.0
DCAR_000966 Daucus carota HOM05D002875 ORTHO05D003215 2.8e-11 72.8 150 33.3
PSO017G7193 Papaver somniferum HOM05D002875 ORTHO05D003215 2.8e-11 72.8 127 33.1
PSO478G3098 Papaver somniferum HOM05D002875 ORTHO05D003215 9.0e-10 67.8 127 31.5
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 1.5e-09 67.0 84 47.6
vmacro18347 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 3.5e-06 55.8 70 48.6


User provided reference genes

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