Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c44446 Carica papaya HOM05D000010 ORTHO05D000063 7.9e-61 236.9 116 100.0
QL03p011486 Quercus lobata HOM05D000010 ORTHO05D000063 1.1e-27 126.7 117 63.2
COL.COLO4_25074 Corchorus olitorius HOM05D000010 ORTHO05D000063 5.7e-27 124.4 113 64.6
CiPaw.04G007100 Carya illinoinensis HOM05D000010 ORTHO05D000063 1.1e-25 120.2 120 61.7
FvH4_2g00240 Fragaria vesca HOM05D000010 ORTHO05D000063 4.1e-25 118.2 124 57.3
FAN24G1425 Fragaria x ananassa HOM05D000010 ORTHO05D000063 7.0e-25 117.5 124 56.5
RcHm_v2.0_Chr6g0249541 Rosa chinensis HOM05D000010 ORTHO05D000063 3.5e-24 115.2 125 56.8
Duzib177G0845 Durio zibethinus HOM05D000010 ORTHO05D000063 7.7e-24 114.0 122 59.8
arahy.Tifrunner.gnm1.ann1.4QZT53 Arachis hypogaea HOM05D000010 ORTHO05D000063 2.9e-23 112.1 114 51.8
Haze_14037 Corylus avellana HOM05D000010 ORTHO05D000063 2.9e-23 112.1 118 57.6
arahy.Tifrunner.gnm1.ann1.4435CX Arachis hypogaea HOM05D000010 ORTHO05D000063 3.8e-23 111.7 114 51.8
TWI18G1368 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 3.8e-23 111.7 120 53.3
Prupe.8G002500 Prunus persica HOM05D000010 ORTHO05D000063 1.9e-22 109.4 128 54.7
Gohir.D08G250600 Gossypium hirsutum HOM05D000010 ORTHO05D000063 5.5e-22 107.8 127 51.2
Gorai.004G267300 Gossypium raimondii HOM05D000010 ORTHO05D000063 5.5e-22 107.8 127 51.2
Nn5g27174 Nelumbo nucifera HOM05D000010 ORTHO05D000063 5.5e-22 107.8 124 51.6
Gohir.A08G230200 Gossypium hirsutum HOM05D000010 ORTHO05D000063 9.4e-22 107.1 127 51.2
Potri.019G066000 Populus trichocarpa HOM05D000010 ORTHO05D000063 3.6e-21 105.1 120 55.8
vmacro00915 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 3.6e-21 105.1 125 49.6
Thecc.08G166800 Theobroma cacao HOM05D000010 ORTHO05D000063 1.4e-20 103.2 119 56.3
Rhsim12G0000900 Rhododendron simsii HOM05D000010 ORTHO05D000063 1.8e-20 102.8 125 47.2
CiPaw.03G010200 Carya illinoinensis HOM05D000010 ORTHO05D000063 2.3e-20 102.4 122 59.0
Manes.17G016600 Manihot esculenta HOM05D000010 ORTHO05D000063 8.8e-20 100.5 112 50.0
Glyma.12G003200 Glycine max HOM05D000010 ORTHO05D000063 1.5e-19 99.8 112 55.4
Manes.17G016500 Manihot esculenta HOM05D000010 ORTHO05D000063 1.5e-19 99.8 121 51.2
Ciclev10024588m.g Citrus clementina HOM05D000010 ORTHO05D000063 2.0e-19 99.4 116 50.9
Lj3g0014364 Lotus japonicus HOM05D000010 ORTHO05D000063 2.6e-19 99.0 110 54.5
MD10G1000900 Malus domestica HOM05D000010 ORTHO05D000063 2.6e-19 99.0 137 54.7
CSS0010251 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 4.4e-19 98.2 126 50.0
Glyma.09G233600 Glycine max HOM05D000010 ORTHO05D000063 5.7e-19 97.8 112 52.7
MD05G1005600 Malus domestica HOM05D000010 ORTHO05D048681 1.3e-18 96.7 126 56.3
AL6G44220 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 2.8e-18 95.5 108 50.9
BcaB01g02754 Brassica carinata HOM05D000010 ORTHO05D000063 3.7e-18 95.1 109 51.4
C03p35000 Brassica napus HOM05D000010 ORTHO05D000063 3.7e-18 95.1 109 51.4
BraA03t12094Z Brassica rapa HOM05D000010 ORTHO05D000063 3.7e-18 95.1 109 51.4
A03p28960 Brassica napus HOM05D000010 ORTHO05D000063 4.8e-18 94.7 109 51.4
BolC3t15812H Brassica oleracea HOM05D000010 ORTHO05D000063 4.8e-18 94.7 109 51.4
Atru.chr13.2617 Acer truncatum HOM05D000010 ORTHO05D000063 6.3e-18 94.4 113 54.9
Phvul.011G003900 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 1.4e-17 93.2 117 52.1
BcaC01g04679 Brassica carinata HOM05D000010 ORTHO05D000063 2.4e-17 92.4 109 50.5
Carub.0006s2895 Capsella rubella HOM05D000010 ORTHO05D000063 2.4e-17 92.4 108 49.1
Potri.013G092400 Populus trichocarpa HOM05D000010 ORTHO05D000063 3.1e-17 92.0 119 54.6
A09p28730 Brassica napus HOM05D001742 ORTHO05D001689 4.1e-17 91.7 109 49.5
BraA09t38433Z Brassica rapa HOM05D000010 ORTHO05D000063 4.1e-17 91.7 109 49.5
CARHR256290 Cardamine hirsuta HOM05D000010 ORTHO05D000063 4.1e-17 91.7 109 49.5
Thhalv10029403m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 7.0e-17 90.9 109 51.4
VMungo1127G2293 Vigna mungo HOM05D000010 ORTHO05D000063 7.0e-17 90.9 115 49.6
BcaB01g01473 Brassica carinata HOM05D000010 ORTHO05D000063 9.1e-17 90.5 107 47.7
Medtr4g035590 Medicago truncatula HOM05D000010 ORTHO05D000063 1.6e-16 89.7 116 49.1
Lj9A693T59 Lonicera japonica HOM05D000010 ORTHO05D000063 2.0e-16 89.4 123 49.6
TPR.G15118 Trifolium pratense HOM05D000010 ORTHO05D000063 3.5e-16 88.6 109 49.5
AT4G10350 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 5.9e-16 87.8 107 47.7
C09p36470 Brassica napus HOM05D001742 ORTHO05D001689 1.0e-15 87.0 109 49.5
BolC9t56482H Brassica oleracea HOM05D000010 ORTHO05D000063 1.0e-15 87.0 109 49.5
Eucgr.F04097 Eucalyptus grandis HOM05D000010 ORTHO05D000063 1.3e-15 86.7 119 49.6
TAR381G0851 Trochodendron aralioides HOM05D000010 ORTHO05D000063 1.7e-15 86.3 120 48.3
BcaC04g21031 Brassica carinata HOM05D000010 ORTHO05D000063 2.2e-15 85.9 109 48.6
Actinidia01535 Actinidia chinensis HOM05D000010 ORTHO05D000063 2.9e-15 85.5 103 48.5
Lalb_Chr19g0140411 Lupinus albus HOM05D000010 ORTHO05D000063 2.9e-15 85.5 117 47.9
Lsat_1_v5_gn_4_131860 Lactuca sativa HOM05D000010 ORTHO05D000063 3.8e-15 85.1 128 43.0
Sp6g07070 Schrenkiella parvula HOM05D000010 ORTHO05D000063 3.8e-15 85.1 109 46.8
Aa31LG9G11660 Aethionema arabicum HOM05D000010 ORTHO05D000063 6.5e-15 84.3 101 49.5
Psat7g152200 Pisum sativum HOM05D000010 ORTHO05D000063 6.5e-15 84.3 110 49.1
Ca_00239_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 8.5e-15 84.0 110 50.0
Lalb_Chr01g0000181 Lupinus albus HOM05D000010 ORTHO05D000063 1.5e-14 83.2 119 46.2
THA.LOC104815607 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 1.9e-14 82.8 98 48.0
Lsat_1_v5_gn_1_24600 Lactuca sativa HOM05D000010 ORTHO05D000063 5.5e-14 81.3 134 41.8
ECA232G5012 Erigeron canadensis HOM05D000010 ORTHO05D000063 1.2e-13 80.1 129 45.0
Hma1.2p1_0378F.1_g139690 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 1.2e-13 80.1 120 44.2
MBI06_g43035_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000063 4.7e-13 78.2 118 43.2
ECA247G1388 Erigeron canadensis HOM05D000010 ORTHO05D000063 1.0e-12 77.0 131 45.0
HanXRQChr12g0369221 Helianthus annuus HOM05D000010 ORTHO05D000063 2.3e-12 75.9 128 44.5
Oeu020639.1 Olea europaea HOM05D000010 ORTHO05D000063 4.0e-12 75.1 119 46.2
GSVIVG01037113001 Vitis vinifera HOM05D000010 ORTHO05D000063 8.8e-12 73.9 66 59.1
DCAR_001479 Daucus carota HOM05D000010 ORTHO05D000063 1.5e-11 73.2 113 43.4
ClCG08G001870 Citrullus lanatus HOM05D000010 ORTHO05D000063 2.0e-11 72.8 58 67.2
MELO3C022117.2 Cucumis melo HOM05D000010 ORTHO05D000063 5.7e-11 71.2 120 40.0
Sabra13G0072400 Salix brachista HOM05D000010 ORTHO05D000063 5.7e-11 71.2 121 40.5
Oeu028614.1 Olea europaea HOM05D000010 ORTHO05D000063 7.5e-11 70.9 117 43.6
Sed0011136 Sechium edule HOM05D000010 ORTHO05D000063 9.8e-11 70.5 88 52.3
Dinv22068 Davidia involucrata HOM05D000010 ORTHO05D000063 2.8e-10 68.9 129 42.6
THA.LOC104813076 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 6.3e-10 67.8 105 45.7
Aqoxy6G00027 Aquilegia oxysepala HOM05D000010 ORTHO05D000063 4.1e-09 65.1 112 45.5
Cc10_g16190 Coffea canephora HOM05D000010 ORTHO05D000063 5.4e-09 64.7 103 41.7
CsaV3_5G039390 Cucumis sativus L. HOM05D000010 ORTHO05D000063 9.1e-09 63.9 103 43.7
PGR102G0032 Punica granatum HOM05D000010 ORTHO05D000063 1.0e-07 60.5 121 38.8
HanXRQChr11g0326531 Helianthus annuus HOM05D000010 ORTHO05D000063 2.9e-07 58.9 117 41.0
EL10Ac9g22928 Beta vulgaris HOM05D000010 ORTHO05D000063 9.5e-06 53.9 111 35.1


User provided reference genes

Program Settings