Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c43717 Carica papaya HOM05D004063 ORTHO05D005326 8.0e-70 266.9 131 100.0
Haze_06929 Corylus avellana HOM05D004063 ORTHO05D005326 3.7e-59 231.5 115 95.7
Haze_06936 Corylus avellana HOM05D004063 ORTHO05D005326 3.7e-59 231.5 115 95.7
Gohir.A01G105500 Gossypium hirsutum HOM05D004063 ORTHO05D005326 3.5e-57 224.9 111 96.4
SalBow7G2995 Salvia bowleyana HOM05D004063 ORTHO05D005326 4.6e-57 224.6 111 95.5
Cfa000095 Carpinus fangiana HOM05D004063 ORTHO05D005326 6.0e-57 224.2 111 96.4
Prupe.5G135600 Prunus persica HOM05D004063 ORTHO05D005326 6.0e-57 224.2 111 96.4
COL.COLO4_38533 Corchorus olitorius HOM05D004063 ORTHO05D005326 7.8e-57 223.8 111 95.5
Gorai.002G116900 Gossypium raimondii HOM05D004063 ORTHO05D005326 1.0e-56 223.4 111 95.5
Atru.chr13.138 Acer truncatum HOM05D004063 ORTHO05D005326 1.3e-56 223.0 111 95.5
MSTRG.978 Avicennia marina HOM05D004063 ORTHO05D005326 1.7e-56 222.6 111 94.6
Migut.C00386 Erythranthe guttata HOM05D004063 ORTHO05D005326 2.3e-56 222.2 111 94.6
SalBow5G0233 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.3e-56 222.2 111 94.6
SalBow5G1556 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.3e-56 222.2 111 94.6
SalBow5G2247 Salvia bowleyana HOM05D004063 ORTHO05D005326 2.3e-56 222.2 111 94.6
Actinidia37921 Actinidia chinensis HOM05D004063 ORTHO05D005326 3.0e-56 221.9 111 94.6
Dinv05531 Davidia involucrata HOM05D004063 ORTHO05D005326 3.0e-56 221.9 111 93.7
Dinv31945 Davidia involucrata HOM05D004063 ORTHO05D005326 3.0e-56 221.9 111 93.7
Hma1.2p1_0157F.1_g069400 Hydrangea macrophylla HOM05D004063 ORTHO05D005326 3.0e-56 221.9 111 93.7
Lalb_Chr16g0384201 Lupinus albus HOM05D004063 ORTHO05D005326 3.0e-56 221.9 111 95.5
MD06G1125000 Malus domestica HOM05D004063 ORTHO05D005326 3.0e-56 221.9 111 94.6
THA.LOC104809761 Tarenaya hassleriana HOM05D004063 ORTHO05D005326 3.0e-56 221.9 111 94.6
GSVIVG01008672001 Vitis vinifera HOM05D004063 ORTHO05D005326 3.0e-56 221.9 111 94.6
AL1G33510 Arabidopsis lyrata HOM05D004063 ORTHO05D005326 3.9e-56 221.5 111 94.6
BcaB07g32056 Brassica carinata HOM05D004063 ORTHO05D005326 3.9e-56 221.5 111 94.6
A07p15610 Brassica napus HOM05D004063 ORTHO05D005326 3.9e-56 221.5 111 94.6
C07p22960 Brassica napus HOM05D004063 ORTHO05D005326 3.9e-56 221.5 111 94.6
BolC7t42835H Brassica oleracea HOM05D004063 ORTHO05D005326 3.9e-56 221.5 111 94.6
Eucgr.F01769 Eucalyptus grandis HOM05D004063 ORTHO05D005326 3.9e-56 221.5 111 94.6
Thhalv10008599m.g Eutrema salsugineum HOM05D004063 ORTHO05D005326 3.9e-56 221.5 111 94.6
FvH4_5g10320 Fragaria vesca HOM05D004063 ORTHO05D005326 3.9e-56 221.5 111 95.5
FAN13G1863 Fragaria x ananassa HOM05D004063 ORTHO05D005326 3.9e-56 221.5 111 95.5
Oeu007480.1 Olea europaea HOM05D004063 ORTHO05D005326 3.9e-56 221.5 111 93.7
Sabra02G0007700 Salix brachista HOM05D004063 ORTHO05D005326 3.9e-56 221.5 111 96.4
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 3.9e-56 221.5 111 96.4
Oeu000693.1 Olea europaea HOM05D004063 ORTHO05D005326 5.1e-56 221.1 111 93.7
Thecc.08G059500 Theobroma cacao HOM05D004063 ORTHO05D005326 5.1e-56 221.1 111 94.6
CSS0047740 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 6.6e-56 220.7 111 93.7
FAN18G2216 Fragaria x ananassa HOM05D004063 ORTHO05D005326 6.6e-56 220.7 111 94.6
Gohir.D02G100300 Gossypium hirsutum HOM05D004063 ORTHO05D005326 6.6e-56 220.7 111 94.6
Gohir.A02G084400 Gossypium hirsutum HOM05D004063 ORTHO05D005326 8.6e-56 220.3 111 93.7
Gohir.D01G091800 Gossypium hirsutum HOM05D004063 ORTHO05D005326 8.6e-56 220.3 111 93.7
AT1G20575 Arabidopsis thaliana HOM05D004063 ORTHO05D005326 1.1e-55 219.9 111 93.7
CARHR021040 Cardamine hirsuta HOM05D004063 ORTHO05D005326 1.1e-55 219.9 111 93.7
DCAR_003678 Daucus carota HOM05D004063 ORTHO05D005326 1.1e-55 219.9 111 93.7
Duzib093G1691 Durio zibethinus HOM05D004063 ORTHO05D005326 1.1e-55 219.9 111 93.7
FAN08G1355 Fragaria x ananassa HOM05D004063 ORTHO05D005326 1.1e-55 219.9 111 94.6
Manes.10G039800 Manihot esculenta HOM05D004063 ORTHO05D005326 1.1e-55 219.9 111 95.5
RcHm_v2.0_Chr7g0187901 Rosa chinensis HOM05D004063 ORTHO05D005326 1.1e-55 219.9 111 94.6
BolC5t30614H Brassica oleracea HOM05D004063 ORTHO05D005326 1.5e-55 219.5 111 93.7
Ciclev10003501m.g Citrus clementina HOM05D004063 ORTHO05D005326 1.5e-55 219.5 111 93.7
Lj4A11G65 Lonicera japonica HOM05D004063 ORTHO05D005326 1.5e-55 219.5 113 92.0
Hund14546 Selenicereus undatus HOM05D004063 ORTHO05D005326 1.5e-55 219.5 111 92.8
SGA_v2.0_scaffold82G26227 Striga asiatica HOM05D004063 ORTHO05D005326 1.5e-55 219.5 111 92.8
BcaC05g25963 Brassica carinata HOM05D004063 ORTHO05D005326 1.9e-55 219.2 111 93.7
C05p19140 Brassica napus HOM05D004063 ORTHO05D005326 1.9e-55 219.2 111 93.7
CANSAT21G0854 Cannabis sativa HOM05D004063 ORTHO05D005326 1.9e-55 219.2 111 93.7
Potri.002G010300 Populus trichocarpa HOM05D004063 ORTHO05D005326 1.9e-55 219.2 111 95.5
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 2.5e-55 218.8 111 93.7
Gorai.005G113700 Gossypium raimondii HOM05D004063 ORTHO05D005326 2.5e-55 218.8 111 93.7
Lalb_Chr05g0218721 Lupinus albus HOM05D004063 ORTHO05D005326 2.5e-55 218.8 111 93.7
TPR.G16276 Trifolium pratense HOM05D004063 ORTHO05D005326 2.5e-55 218.8 111 93.7
TPR.G34273 Trifolium pratense HOM05D004063 ORTHO05D005326 2.5e-55 218.8 111 93.7
BraA07t29300Z Brassica rapa HOM05D004063 ORTHO05D005326 3.3e-55 218.4 111 93.7
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 3.3e-55 218.4 111 95.5
Sp1g18280 Schrenkiella parvula HOM05D004063 ORTHO05D005326 3.3e-55 218.4 111 93.7
Glyma.13G171700 Glycine max HOM05D004063 ORTHO05D005326 4.3e-55 218.0 111 93.7
PSO832G0952 Papaver somniferum HOM05D004063 ORTHO05D005326 4.3e-55 218.0 111 91.9
Phvul.003G057700 Phaseolus vulgaris HOM05D004063 ORTHO05D005326 4.3e-55 218.0 111 93.7
SalBow5G2049 Salvia bowleyana HOM05D004063 ORTHO05D005326 4.3e-55 218.0 111 92.8
CiPaw.07G138500 Carya illinoinensis HOM05D004063 ORTHO05D005326 5.6e-55 217.6 111 93.7
Haze_22784 Corylus avellana HOM05D004063 ORTHO05D005326 5.6e-55 217.6 111 94.6
Medtr4g087885 Medicago truncatula HOM05D004063 ORTHO05D005326 5.6e-55 217.6 110 93.6
ATR0693G211 Amborella trichopoda HOM05D004063 ORTHO05D005326 7.3e-55 217.2 111 92.8
TWI36G0802 Tripterygium wilfordii HOM05D004063 ORTHO05D005326 7.3e-55 217.2 111 92.8
ClCG11G018680 Citrullus lanatus HOM05D004063 ORTHO05D005326 9.5e-55 216.9 111 93.7
FAN04G0504 Fragaria x ananassa HOM05D004063 ORTHO05D005326 9.5e-55 216.9 111 93.7
Glyma.07G204400 Glycine max HOM05D004063 ORTHO05D005326 9.5e-55 216.9 111 92.8
PSO063G2900 Papaver somniferum HOM05D004063 ORTHO05D005326 9.5e-55 216.9 111 91.0
QL02p014238 Quercus lobata HOM05D004063 ORTHO05D005326 9.5e-55 216.9 111 91.9
Carub.0001s2006 Capsella rubella HOM05D004063 ORTHO05D005326 1.2e-54 216.5 111 92.8
MELO3C017019.2 Cucumis melo HOM05D004063 ORTHO05D005326 1.2e-54 216.5 111 93.7
CsaV3_4G037210 Cucumis sativus L. HOM05D004063 ORTHO05D005326 1.2e-54 216.5 111 93.7
ECA232G2837 Erigeron canadensis HOM05D004063 ORTHO05D005326 1.2e-54 216.5 111 92.8
Lsat_1_v5_gn_9_45181 Lactuca sativa HOM05D004063 ORTHO05D005326 1.2e-54 216.5 111 92.8
HanXRQChr05g0144881 Helianthus annuus HOM05D004063 ORTHO05D005326 1.6e-54 216.1 111 92.8
Psat7g118640 Pisum sativum HOM05D004063 ORTHO05D005326 1.6e-54 216.1 111 91.9
Rhsim01G0045200 Rhododendron simsii HOM05D004063 ORTHO05D005326 1.6e-54 216.1 111 91.9
RhsimUnG0172300 Rhododendron simsii HOM05D004063 ORTHO05D005326 1.6e-54 216.1 111 91.9
unitig_22.g5884 Utricularia gibba HOM05D004063 ORTHO05D005326 1.6e-54 216.1 111 91.9
Sed0026987 Sechium edule HOM05D004063 ORTHO05D005326 2.1e-54 215.7 111 93.7
EL10Ac4g08397 Beta vulgaris HOM05D004063 ORTHO05D005326 2.8e-54 215.3 111 90.1
BcaB03g14313 Brassica carinata HOM05D004063 ORTHO05D005326 3.6e-54 214.9 117 89.7
AUR62019619 Chenopodium quinoa HOM05D004063 ORTHO05D005326 3.6e-54 214.9 111 90.1
AUR62039603 Chenopodium quinoa HOM05D004063 ORTHO05D005326 3.6e-54 214.9 111 90.1
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 4.7e-54 214.5 111 91.9
Cc00_g23370 Coffea canephora HOM05D004063 ORTHO05D005326 4.7e-54 214.5 111 91.0
Cc02_g33840 Coffea canephora HOM05D004063 ORTHO05D005326 4.7e-54 214.5 111 91.0
HanXRQChr15g0492711 Helianthus annuus HOM05D004063 ORTHO05D005326 4.7e-54 214.5 111 92.8
Nitab4.5_0000588g0070 Nicotiana tabacum HOM05D004063 ORTHO05D005326 6.2e-54 214.2 110 92.7
Peaxi162Scf00893g00009 Petunia axillaris HOM05D004063 ORTHO05D005326 6.2e-54 214.2 111 91.9
Aqoxy5G01076 Aquilegia oxysepala HOM05D004063 ORTHO05D005326 1.4e-53 213.0 111 90.1
Lj4g0024263 Lotus japonicus HOM05D004063 ORTHO05D005326 1.4e-53 213.0 111 91.0
arahy.Tifrunner.gnm1.ann1.YJK3BU Arachis hypogaea HOM05D004063 ORTHO05D005326 1.8e-53 212.6 111 91.0
arahy.Tifrunner.gnm1.ann1.G5WY8I Arachis hypogaea HOM05D001447 ORTHO05D005061 2.3e-53 212.2 111 91.0
arahy.Tifrunner.gnm1.ann1.T45K83 Arachis hypogaea HOM05D004063 ORTHO05D005326 2.3e-53 212.2 111 91.0
Ca_26048_v3 Cicer arietinum L. HOM05D004063 ORTHO05D005326 3.1e-53 211.8 111 91.0
PGR083G1742 Punica granatum HOM05D004063 ORTHO05D005326 3.1e-53 211.8 111 90.1
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 3.1e-53 211.8 111 91.0
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 4.0e-53 211.5 111 91.0
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 4.0e-53 211.5 111 91.0
arahy.Tifrunner.gnm1.ann1.T0MTDZ Arachis hypogaea HOM05D004063 ORTHO05D005326 8.9e-53 210.3 111 90.1
SEGI_30145 Sequoiadendron giganteum HOM05D004063 ORTHO05D005326 1.2e-52 209.9 111 89.2
Medtr2g097220 Medicago truncatula HOM05D004063 ORTHO05D005326 1.5e-52 209.5 111 90.1
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.0e-52 209.1 117 86.3
HPP92_006203 Vanilla planifolia HOM05D004063 ORTHO05D005326 2.0e-52 209.1 111 91.0
Zm00001eb062940 Zea mays HOM05D004063 ORTHO05D005326 5.8e-52 207.6 111 89.2
Os03g0824400 Oryza sativa ssp. japonica HOM05D004063 ORTHO05D005326 1.7e-51 206.1 111 87.4
CDE05G0316 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 2.2e-51 205.7 111 85.6
Nn6g31864 Nelumbo nucifera HOM05D004063 ORTHO05D005326 4.9e-51 204.5 105 92.4
BraA06t24763Z Brassica rapa HOM05D004063 ORTHO05D005326 9.2e-50 200.3 112 86.6
TAR376G1187 Trochodendron aralioides HOM05D004063 ORTHO05D005326 2.1e-49 199.1 111 86.5
Mapoly0048s0015 Marchantia polymorpha HOM05D004063 ORTHO05D005326 1.0e-48 196.8 111 82.0
COL.COLO4_05219 Corchorus olitorius HOM05D004063 ORTHO05D005326 3.3e-47 191.8 111 85.6
MBI08_g37091_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 9.6e-47 190.3 116 81.0
Pp3c13_6200 Physcomitrium patens HOM05D004063 ORTHO05D005326 9.6e-47 190.3 111 80.2
A06p16570 Brassica napus HOM05D004063 ORTHO05D005326 2.1e-46 189.1 111 84.7
SMO147G0209 Selaginella moellendorffii HOM05D004063 ORTHO05D005326 2.8e-46 188.7 111 80.2
vmacro17869 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 6.2e-46 187.6 126 73.8
CBR_g50625 Chara braunii HOM05D004063 ORTHO05D005326 4.4e-44 181.4 111 78.4
CBR_g19920 Chara braunii HOM05D004063 ORTHO05D005326 2.2e-43 179.1 111 76.6
SalBow5G3904 Salvia bowleyana HOM05D004063 ORTHO05D005326 3.8e-43 178.3 92 92.4
Aa31LG7G4830 Aethionema arabicum HOM05D004063 ORTHO05D005326 4.9e-43 177.9 92 91.3
CDE05G0379 Ceratophyllum demersum HOM05D004063 ORTHO05D005326 1.6e-41 172.9 92 85.9
arahy.Tifrunner.gnm1.ann1.Z2LGXF Arachis hypogaea HOM05D004063 ORTHO05D013367 4.6e-41 171.4 113 74.3
Manes.12G151825 Manihot esculenta HOM05D004063 ORTHO05D005326 1.7e-40 169.5 88 93.2
MBI08_g41353_MAGBIO Magnolia biondii HOM05D004063 ORTHO05D005326 8.7e-40 167.2 99 82.8
vmacro04405 Vaccinium macrocarpon HOM05D004063 ORTHO05D005326 1.3e-38 163.3 94 83.0
MCO11G313 Micromonas commoda HOM05D004063 ORTHO05D005326 2.0e-36 156.0 111 67.6
Cfa026140 Carpinus fangiana HOM05D004063 ORTHO05D005326 2.2e-35 152.5 111 66.7
arahy.Tifrunner.gnm1.ann1.ND9UIP Arachis hypogaea HOM05D004063 ORTHO05D013367 4.9e-35 151.4 121 66.9
arahy.Tifrunner.gnm1.ann1.SDYE8W Arachis hypogaea HOM05D004063 ORTHO05D013367 4.9e-35 151.4 121 66.9
arahy.Tifrunner.gnm1.ann1.RK3M4K Arachis hypogaea HOM05D004063 ORTHO05D001221 1.4e-34 149.8 121 66.1
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 5.4e-34 147.9 116 65.5
Sc15g0004420 Simmondsia chinensis HOM05D004063 ORTHO05D005326 5.4e-34 147.9 72 94.4
Psat5g286640 Pisum sativum HOM05D004063 ORTHO05D005326 9.3e-34 147.1 72 94.4
Cfa014082 Carpinus fangiana HOM05D004063 ORTHO05D005326 1.6e-33 146.4 72 94.4
Cre03.g150950 Chlamydomonas reinhardtii HOM05D004063 ORTHO05D005326 3.5e-33 145.2 116 60.3
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 4.6e-33 144.8 111 63.1
arahy.Tifrunner.gnm1.ann1.T1UNZ1 Arachis hypogaea HOM05D004063 ORTHO05D005326 3.3e-31 138.7 110 67.3
Rhsim06G0007000 Rhododendron simsii HOM05D004063 ORTHO05D005326 6.4e-27 124.4 75 80.0
arahy.Tifrunner.gnm1.ann1.N6YLHX Arachis hypogaea HOM05D004063 ORTHO05D005326 1.3e-24 116.7 72 77.8
arahy.Tifrunner.gnm1.ann1.WN1LH4 Arachis hypogaea HOM05D004063 ORTHO05D005326 6.2e-22 107.8 113 54.0
CSS0027821 Camellia sinensis var. sinensis HOM05D004063 ORTHO05D005326 1.3e-19 100.1 111 52.3
SalBow5G1320 Salvia bowleyana HOM05D004063 ORTHO05D005326 3.7e-14 82.0 46 89.1
SalBow5G0394 Salvia bowleyana HOM05D004063 ORTHO05D005326 6.3e-14 81.3 40 95.0
SalBow5G4311 Salvia bowleyana HOM05D004063 ORTHO05D005326 8.2e-14 80.9 39 97.4
Cc07_g21180 Coffea canephora HOM05D004063 ORTHO05D005326 2.5e-10 69.3 39 82.1
arahy.Tifrunner.gnm1.ann1.PZHE2U Arachis hypogaea HOM05D004063 ORTHO05D005326 3.9e-08 62.0 55 63.6
Rhsim13G0010800 Rhododendron simsii HOM05D000068 ORTHO05D000084 1.1e-07 60.5 66 51.5
Cc07_g21170 Coffea canephora HOM05D004063 ORTHO05D005326 1.6e-06 56.6 28 85.7


User provided reference genes

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