Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c43323 Carica papaya HOM05D001206 ORTHO05D043547 1.2e-29 132.5 65 100.0
Thecc.02G124600 Theobroma cacao HOM05D001206 ORTHO05D002068 3.5e-26 120.9 64 87.5
Hma1.2p1_0908F.1_g235720 Hydrangea macrophylla HOM05D001206 ORTHO05D002068 3.0e-25 117.9 65 83.1
PGR142G3443 Punica granatum HOM05D001206 ORTHO05D002068 3.9e-25 117.5 65 84.6
CiPaw.05G026500 Carya illinoinensis HOM05D001206 ORTHO05D002068 5.1e-25 117.1 65 83.1
Gohir.A13G049200 Gossypium hirsutum HOM05D001206 ORTHO05D002068 6.7e-25 116.7 64 85.9
Gohir.D13G047700 Gossypium hirsutum HOM05D001206 ORTHO05D002068 6.7e-25 116.7 64 85.9
Gorai.013G053300 Gossypium raimondii HOM05D001206 ORTHO05D002068 8.7e-25 116.3 64 84.4
Haze_10389 Corylus avellana HOM05D001206 ORTHO05D002068 4.3e-24 114.0 65 78.5
Psat1g212600 Pisum sativum HOM05D001206 ORTHO05D002068 5.6e-24 113.6 65 80.0
Peaxi162Scf00152g00738 Petunia axillaris HOM05D001206 ORTHO05D002068 7.4e-24 113.2 64 81.2
TWI23G1316 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 7.4e-24 113.2 65 81.5
Nn1g05689 Nelumbo nucifera HOM05D001206 ORTHO05D002068 9.6e-24 112.8 65 78.5
TWI14G1249 Tripterygium wilfordii HOM05D001206 ORTHO05D002068 9.6e-24 112.8 65 83.1
Glyma.15G060700 Glycine max HOM05D001206 ORTHO05D002068 1.3e-23 112.5 65 81.5
Phvul.006G199100 Phaseolus vulgaris HOM05D001206 ORTHO05D002068 1.3e-23 112.5 65 81.5
CANSAT54G1477 Cannabis sativa HOM05D001206 ORTHO05D002068 2.1e-23 111.7 65 76.9
Lalb_Chr20g0122751 Lupinus albus HOM05D001206 ORTHO05D002068 2.1e-23 111.7 65 81.5
CiPaw.05G026300 Carya illinoinensis HOM05D001206 ORTHO05D002068 2.8e-23 111.3 65 80.0
Glyma.13G254200 Glycine max HOM05D001206 ORTHO05D002068 2.8e-23 111.3 65 80.0
Nitab4.5_0010352g0080 Nicotiana tabacum HOM05D001206 ORTHO05D002068 2.8e-23 111.3 64 79.7
Actinidia00326 Actinidia chinensis HOM05D001206 ORTHO05D002068 3.7e-23 110.9 64 79.7
Dinv08963 Davidia involucrata HOM05D001206 ORTHO05D002068 3.7e-23 110.9 65 80.0
Solyc01g106360.3 Solanum lycopersicum HOM05D001206 ORTHO05D002068 6.2e-23 110.2 65 80.0
PGSC0003DMG402003118 Solanum tuberosum HOM05D001206 ORTHO05D002068 6.2e-23 110.2 64 79.7
Eucgr.I02569 Eucalyptus grandis HOM05D001206 ORTHO05D002068 1.1e-22 109.4 65 73.8
TPR.G32630 Trifolium pratense HOM05D001206 ORTHO05D002068 1.1e-22 109.4 63 79.4
Actinidia02414 Actinidia chinensis HOM05D001206 ORTHO05D002068 1.4e-22 109.0 64 78.1
CAN.G504.54 Capsicum annuum HOM05D001206 ORTHO05D002068 1.4e-22 109.0 64 79.7
FvH4_2g11120 Fragaria vesca HOM05D001206 ORTHO05D002068 1.4e-22 109.0 65 78.5
FAN15G0254 Fragaria x ananassa HOM05D001206 ORTHO05D002068 1.4e-22 109.0 65 78.5
FAN24G1517 Fragaria x ananassa HOM05D001206 ORTHO05D002068 1.4e-22 109.0 65 78.5
FAN27G1668 Fragaria x ananassa HOM05D001206 ORTHO05D002068 1.4e-22 109.0 65 78.5
Sopen01g048730 Solanum pennellii HOM05D001206 ORTHO05D002068 1.4e-22 109.0 65 78.5
RcHm_v2.0_Chr6g0269381 Rosa chinensis HOM05D001206 ORTHO05D002068 1.8e-22 108.6 64 78.1
Peaxi162Scf00016g03464 Petunia axillaris HOM05D001206 ORTHO05D002068 2.4e-22 108.2 64 76.6
Prupe.8G076300 Prunus persica HOM05D001206 ORTHO05D002068 2.4e-22 108.2 65 78.5
Ah.01g024200 Amaranthus hybridus HOM05D001206 ORTHO05D002068 5.3e-22 107.1 61 78.7
Eucgr.I02568 Eucalyptus grandis HOM05D001206 ORTHO05D002068 5.3e-22 107.1 65 75.4
Sed0003330 Sechium edule HOM05D001206 ORTHO05D002068 5.3e-22 107.1 65 80.0
Sopen01g048720 Solanum pennellii HOM05D001206 ORTHO05D002068 5.3e-22 107.1 64 76.6
VMungo0540G1701 Vigna mungo HOM05D001206 ORTHO05D002068 5.3e-22 107.1 65 75.4
Peaxi162Scf00299g00236 Petunia axillaris HOM05D001206 ORTHO05D002068 9.0e-22 106.3 64 75.0
CAN.G504.52 Capsicum annuum HOM05D001206 ORTHO05D002068 1.2e-21 105.9 65 73.8
Gohir.A12G017600 Gossypium hirsutum HOM05D001206 ORTHO05D002068 1.2e-21 105.9 64 78.1
CAN.G504.50 Capsicum annuum HOM05D001206 ORTHO05D002068 1.5e-21 105.5 63 76.2
Ca_00185_v3 Cicer arietinum L. HOM05D001206 ORTHO05D002068 1.5e-21 105.5 65 76.9
ClCG09G016410 Citrullus lanatus HOM05D001206 ORTHO05D002068 1.5e-21 105.5 65 78.5
Gohir.D12G018200 Gossypium hirsutum HOM05D001206 ORTHO05D002068 1.5e-21 105.5 64 79.7
Gorai.008G018500 Gossypium raimondii HOM05D001206 ORTHO05D002068 1.5e-21 105.5 64 79.7
CsaV3_7G007390 Cucumis sativus L. HOM05D001206 ORTHO05D002068 2.0e-21 105.1 65 78.5
Manes.10G094600 Manihot esculenta HOM05D001206 ORTHO05D002068 2.0e-21 105.1 64 76.6
Lj6g0027071 Lotus japonicus HOM05D001206 ORTHO05D002068 3.4e-21 104.4 65 80.0
MELO3C018563.2 Cucumis melo HOM05D001206 ORTHO05D002068 4.5e-21 104.0 65 76.9
Nitab4.5_0002335g0070 Nicotiana tabacum HOM05D001206 ORTHO05D002068 4.5e-21 104.0 64 78.1
SGA_v2.0_scaffold342G49396 Striga asiatica HOM05D001206 ORTHO05D002068 4.5e-21 104.0 64 73.4
Medtr2g010180 Medicago truncatula HOM05D001206 ORTHO05D002068 5.8e-21 103.6 65 75.4
CSS0000304 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 7.6e-21 103.2 64 75.0
arahy.Tifrunner.gnm1.ann1.3DT0RH Arachis hypogaea HOM05D001206 ORTHO05D002068 1.0e-20 102.8 63 76.2
arahy.Tifrunner.gnm1.ann1.02U3XB Arachis hypogaea HOM05D001206 ORTHO05D002068 1.7e-20 102.1 63 74.6
BcaC03g18264 Brassica carinata HOM05D001206 ORTHO05D002068 1.7e-20 102.1 65 67.7
C02p63380 Brassica napus HOM05D001206 ORTHO05D002068 1.7e-20 102.1 65 67.7
BolC2t12406H Brassica oleracea HOM05D001206 ORTHO05D002068 1.7e-20 102.1 65 67.7
Thhalv10003835m.g Eutrema salsugineum HOM05D001206 ORTHO05D002068 1.7e-20 102.1 65 69.2
SalBow6G5084 Salvia bowleyana HOM05D001206 ORTHO05D002068 1.7e-20 102.1 65 72.3
QL11p026734 Quercus lobata HOM05D001206 ORTHO05D002068 2.2e-20 101.7 64 73.4
Sp2g27530 Schrenkiella parvula HOM05D001206 ORTHO05D002068 3.8e-20 100.9 65 67.7
THA.LOC104799673 Tarenaya hassleriana HOM05D001206 ORTHO05D002068 3.8e-20 100.9 64 70.3
Carub.0008s2524 Capsella rubella HOM05D001206 ORTHO05D002068 4.9e-20 100.5 65 67.7
Rhsim05G0095600 Rhododendron simsii HOM05D001206 ORTHO05D002068 4.9e-20 100.5 64 73.4
EL10Ac9g22131 Beta vulgaris HOM05D001206 ORTHO05D002068 6.5e-20 100.1 62 72.6
TAR628G1628 Trochodendron aralioides HOM05D001206 ORTHO05D002068 6.5e-20 100.1 64 75.0
CSS0023121 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 8.4e-20 99.8 62 75.8
CSS0046406 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D002068 8.4e-20 99.8 62 75.8
Lj5A225G70 Lonicera japonica HOM05D001206 ORTHO05D002068 8.4e-20 99.8 65 69.2
ATR0800G073 Amborella trichopoda HOM05D001206 ORTHO05D002068 1.4e-19 99.0 64 71.9
A02p43320 Brassica napus HOM05D001206 ORTHO05D002068 1.4e-19 99.0 65 66.2
BraA02t09258Z Brassica rapa HOM05D001206 ORTHO05D002068 1.4e-19 99.0 65 66.2
CARHR278410 Cardamine hirsuta HOM05D001206 ORTHO05D002068 1.4e-19 99.0 65 66.2
PGSC0003DMG400003120 Solanum tuberosum HOM05D001206 ORTHO05D002068 1.4e-19 99.0 63 71.4
AL8G41810 Arabidopsis lyrata HOM05D001206 ORTHO05D002068 1.9e-19 98.6 65 66.2
AT5G64440 Arabidopsis thaliana HOM05D001206 ORTHO05D002068 1.9e-19 98.6 65 66.2
MSTRG.16638 Avicennia marina HOM05D001206 ORTHO05D002068 1.9e-19 98.6 64 73.4
MD05G1050200 Malus domestica HOM05D001206 ORTHO05D002068 1.9e-19 98.6 65 66.2
Oeu059886.1 Olea europaea HOM05D001206 ORTHO05D002068 1.9e-19 98.6 64 70.3
Sopen01g048700 Solanum pennellii HOM05D001206 ORTHO05D002068 1.9e-19 98.6 63 71.4
BcaB07g29744 Brassica carinata HOM05D001206 ORTHO05D002068 2.5e-19 98.2 65 66.2
Cc02_g20550 Coffea canephora HOM05D001206 ORTHO05D002068 2.5e-19 98.2 65 69.2
vmacro19593 Vaccinium macrocarpon HOM05D001206 ORTHO05D002068 2.5e-19 98.2 63 77.8
Hund00402 Selenicereus undatus HOM05D001206 ORTHO05D002068 3.2e-19 97.8 62 71.0
MSTRG.20250 Avicennia marina HOM05D001206 ORTHO05D002068 4.2e-19 97.4 64 71.9
Sabra16G0178300 Salix brachista HOM05D001206 ORTHO05D002068 4.2e-19 97.4 65 73.8
CAN.G504.53 Capsicum annuum HOM05D001206 ORTHO05D002068 5.5e-19 97.1 64 71.9
Potri.001G285900 Populus trichocarpa HOM05D001206 ORTHO05D002068 5.5e-19 97.1 65 70.8
GSVIVG01038529001 Vitis vinifera HOM05D001206 ORTHO05D002068 5.5e-19 97.1 65 67.7
Nitab4.5_0006854g0060 Nicotiana tabacum HOM05D001206 ORTHO05D002068 7.1e-19 96.7 63 73.0
Aa31LG1G17460 Aethionema arabicum HOM05D001206 ORTHO05D002068 9.3e-19 96.3 65 63.1
Solyc01g106340.3 Solanum lycopersicum HOM05D001206 ORTHO05D002068 1.2e-18 95.9 64 70.3
Sopen01g048710 Solanum pennellii HOM05D001206 ORTHO05D002068 1.2e-18 95.9 64 70.3
BcaC01g02682 Brassica carinata HOM05D001206 ORTHO05D002068 1.6e-18 95.5 65 64.6
A06p31100 Brassica napus HOM05D001206 ORTHO05D002068 1.6e-18 95.5 65 64.6
C03p61820 Brassica napus HOM05D001206 ORTHO05D002068 1.6e-18 95.5 65 64.6
BolC3t18443H Brassica oleracea HOM05D001206 ORTHO05D002068 1.6e-18 95.5 65 64.6
BraA06t26053Z Brassica rapa HOM05D001206 ORTHO05D002068 1.6e-18 95.5 65 64.6
BraA06t26058Z Brassica rapa HOM05D000001 ORTHO05D011479 2.1e-18 95.1 65 64.6
Solyc01g106330.3 Solanum lycopersicum HOM05D001206 ORTHO05D002068 2.1e-18 95.1 63 69.8
PGSC0003DMG400045238 Solanum tuberosum HOM05D001206 ORTHO05D043547 2.7e-18 94.7 64 68.8
PGSC0003DMG401003118 Solanum tuberosum HOM05D001206 ORTHO05D002068 3.5e-18 94.4 64 68.8
vmacro01903 Vaccinium macrocarpon HOM05D001206 ORTHO05D002068 3.5e-18 94.4 64 70.3
HanXRQChr08g0227111 Helianthus annuus HOM05D001206 ORTHO05D002068 2.3e-17 91.7 65 64.6
Eucgr.I02570 Eucalyptus grandis HOM05D001206 ORTHO05D002068 3.0e-17 91.3 58 69.0
Lsat_1_v5_gn_7_83060 Lactuca sativa HOM05D001206 ORTHO05D002068 3.0e-17 91.3 65 63.1
HPP92_017107 Vanilla planifolia HOM05D001206 ORTHO05D002068 3.0e-17 91.3 64 64.1
Migut.B00517 Erythranthe guttata HOM05D001206 ORTHO05D002068 5.1e-17 90.5 64 67.2
ECA236G0460 Erigeron canadensis HOM05D001206 ORTHO05D002068 6.7e-17 90.1 65 63.1
Lj9A342T54 Lonicera japonica HOM05D001206 ORTHO05D002068 8.7e-17 89.7 63 63.5
PSO700G0067 Papaver somniferum HOM05D001206 ORTHO05D002068 8.7e-17 89.7 62 67.7
PSO761G0240 Papaver somniferum HOM05D001206 ORTHO05D002068 8.7e-17 89.7 62 67.7
HPP92_017097 Vanilla planifolia HOM05D001206 ORTHO05D002068 8.7e-17 89.7 64 62.5
MBI16_g44751_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D002068 3.3e-16 87.8 63 61.9
ECA234G3918 Erigeron canadensis HOM05D001206 ORTHO05D002068 7.4e-16 86.7 65 64.6
Aqoxy425s001 Aquilegia oxysepala HOM05D001206 ORTHO05D002068 9.6e-16 86.3 61 68.9
Aqoxy6G00631 Aquilegia oxysepala HOM05D001206 ORTHO05D002068 9.6e-16 86.3 61 68.9
HanXRQChr10g0291231 Helianthus annuus HOM05D001206 ORTHO05D002068 9.6e-16 86.3 65 64.6
Os04g0102700 Oryza sativa ssp. japonica HOM05D001206 ORTHO05D002068 1.6e-15 85.5 63 65.1
CDE04G3774 Ceratophyllum demersum HOM05D001206 ORTHO05D002068 2.8e-15 84.7 62 61.3
CAN.G504.51 Capsicum annuum HOM05D001206 ORTHO05D002068 4.8e-15 84.0 64 62.5
DCAR_005658 Daucus carota HOM05D001206 ORTHO05D002068 1.1e-14 82.8 64 60.9
Lsat_1_v5_gn_5_110881 Lactuca sativa HOM05D001206 ORTHO05D002068 1.4e-14 82.4 65 60.0
DCAR_029282 Daucus carota HOM05D001206 ORTHO05D002068 2.4e-14 81.6 64 59.4
PGR142G2427 Punica granatum HOM05D001206 ORTHO05D002068 5.3e-14 80.5 66 59.1
CDE07G0825 Ceratophyllum demersum HOM05D001206 ORTHO05D002068 1.0e-12 76.3 63 61.9
SEGI_11684 Sequoiadendron giganteum HOM05D001206 ORTHO05D002068 3.8e-12 74.3 63 55.6
Nitab4.5_0009020g0080 Nicotiana tabacum HOM05D001206 ORTHO05D002068 9.3e-11 69.7 35 82.9
SMO347G0405 Selaginella moellendorffii HOM05D001206 ORTHO05D002068 1.8e-09 65.5 64 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3185 Anthoceros agrestis HOM05D001206 ORTHO05D002068 8.7e-09 63.2 65 47.7
HanXRQChr08g0227101 Helianthus annuus HOM05D001206 ORTHO05D002068 8.7e-09 63.2 65 50.8
AUR62027076 Chenopodium quinoa HOM05D001206 ORTHO05D002068 1.9e-08 62.0 34 76.5
AUR62030916 Chenopodium quinoa HOM05D001206 ORTHO05D002068 3.3e-08 61.2 33 78.8
Ah.01g007260 Amaranthus hybridus HOM05D001206 ORTHO05D002068 1.6e-07 58.9 36 69.4
Oeu041088.1 Olea europaea HOM05D001206 ORTHO05D002068 1.1e-06 56.2 35 71.4
FvH4_1g25540 Fragaria vesca HOM05D001206 ORTHO05D002068 1.8e-06 55.5 62 41.9
Mapoly0001s0333 Marchantia polymorpha HOM05D001206 ORTHO05D002068 2.4e-06 55.1 63 39.7
Pp3c3_2980 Physcomitrium patens HOM05D001206 ORTHO05D002068 2.4e-06 55.1 63 41.3
QL10p040090 Quercus lobata HOM05D001206 ORTHO05D002068 2.4e-06 55.1 63 41.3
Sopen12g027140 Solanum pennellii HOM05D001206 ORTHO05D002068 5.3e-06 53.9 62 38.7
Manes.13G079500 Manihot esculenta HOM05D001206 ORTHO05D002068 6.9e-06 53.5 64 43.8
MD15G1139000 Malus domestica HOM05D001206 ORTHO05D002068 9.0e-06 53.1 62 38.7


User provided reference genes

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