Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c43236 Carica papaya HOM05D000147 ORTHO05D120578 8.9e-34 146.4 74 100.0
TAR627G0320 Trochodendron aralioides HOM05D000147 ORTHO05D005950 2.4e-10 68.6 58 70.7
TAR627G0645 Trochodendron aralioides HOM05D000147 ORTHO05D005950 2.4e-10 68.6 58 70.7
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 4.0e-10 67.8 58 72.4
EL10Ac8g20131 Beta vulgaris HOM05D000147 ORTHO05D005950 4.0e-10 67.8 58 72.4
Ciclev10014675m.g Citrus clementina HOM05D000147 ORTHO05D005950 4.0e-10 67.8 58 72.4
Hma1.2p1_0298F.1_g117450 Hydrangea macrophylla HOM05D000147 ORTHO05D005950 4.0e-10 67.8 58 72.4
MBI02_g15375_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D005950 4.0e-10 67.8 58 70.7
Manes.16G002800 Manihot esculenta HOM05D000147 ORTHO05D005950 4.0e-10 67.8 58 72.4
Os02g0740300 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D005950 4.0e-10 67.8 58 70.7
Potri.004G004000 Populus trichocarpa HOM05D000147 ORTHO05D005950 4.0e-10 67.8 58 72.4
Sed0005764 Sechium edule HOM05D000147 ORTHO05D005950 4.0e-10 67.8 58 70.7
Actinidia02343 Actinidia chinensis HOM05D000070 ORTHO05D005950 5.3e-10 67.4 58 72.4
Actinidia26885 Actinidia chinensis HOM05D000147 ORTHO05D005950 5.3e-10 67.4 58 72.4
QL05p071825 Quercus lobata HOM05D000147 ORTHO05D005950 5.3e-10 67.4 58 70.7
ATR1149G150 Amborella trichopoda HOM05D000147 ORTHO05D005950 6.9e-10 67.0 58 69.0
Cfa000159 Carpinus fangiana HOM05D000147 ORTHO05D005950 6.9e-10 67.0 58 70.7
Haze_06859 Corylus avellana HOM05D000147 ORTHO05D005950 6.9e-10 67.0 58 70.7
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 6.9e-10 67.0 58 70.7
Atru.chr10.2285 Acer truncatum HOM05D000147 ORTHO05D005950 9.0e-10 66.6 58 70.7
PGR042G1740 Punica granatum HOM05D000147 ORTHO05D005950 9.0e-10 66.6 58 70.7
TWI38G0618 Tripterygium wilfordii HOM05D000147 ORTHO05D005950 9.0e-10 66.6 58 70.7
CSS0044927 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005950 1.2e-09 66.2 58 70.7
CiPaw.10G074700 Carya illinoinensis HOM05D000147 ORTHO05D005950 1.2e-09 66.2 58 69.0
AUR62012759 Chenopodium quinoa HOM05D000147 ORTHO05D005950 1.2e-09 66.2 58 70.7
AUR62021899 Chenopodium quinoa HOM05D000147 ORTHO05D005950 1.2e-09 66.2 58 70.7
Eucgr.E03984 Eucalyptus grandis HOM05D000147 ORTHO05D005950 1.5e-09 65.9 58 70.7
Nn1g07278 Nelumbo nucifera HOM05D000147 ORTHO05D005950 1.5e-09 65.9 58 70.7
Zm00001eb254090 Zea mays HOM05D000070 ORTHO05D005950 2.0e-09 65.5 58 69.0
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 2.6e-09 65.1 58 65.5
BcaB01g01796 Brassica carinata HOM05D000147 ORTHO05D005950 2.6e-09 65.1 58 65.5
A09p26440 Brassica napus HOM05D000147 ORTHO05D005950 2.6e-09 65.1 58 65.5
BraA09t38218Z Brassica rapa HOM05D000147 ORTHO05D005950 2.6e-09 65.1 58 65.5
MELO3C007419.2 Cucumis melo HOM05D000147 ORTHO05D005950 2.6e-09 65.1 58 67.2
PSO675G5655 Papaver somniferum HOM05D000147 ORTHO05D005950 2.6e-09 65.1 58 70.7
Sp6g04620 Schrenkiella parvula HOM05D000070 ORTHO05D005950 2.6e-09 65.1 58 65.5
Hund23430 Selenicereus undatus HOM05D000147 ORTHO05D005950 2.6e-09 65.1 58 69.0
AT4G04180 Arabidopsis thaliana HOM05D000147 ORTHO05D005950 3.4e-09 64.7 58 65.5
arahy.Tifrunner.gnm1.ann1.0743V5 Arachis hypogaea HOM05D000147 ORTHO05D005950 3.4e-09 64.7 58 67.2
arahy.Tifrunner.gnm1.ann1.D0808P Arachis hypogaea HOM05D000147 ORTHO05D005950 3.4e-09 64.7 58 67.2
CANSAT56G0204 Cannabis sativa HOM05D000070 ORTHO05D005950 3.4e-09 64.7 58 69.0
ClCG01G021650 Citrullus lanatus HOM05D000070 ORTHO05D005950 3.4e-09 64.7 58 67.2
PSO541G0930 Papaver somniferum HOM05D000147 ORTHO05D005950 3.4e-09 64.7 58 70.7
Rhsim13G0150000 Rhododendron simsii HOM05D000147 ORTHO05D005950 3.4e-09 64.7 58 69.0
AL6G47800 Arabidopsis lyrata HOM05D000070 ORTHO05D005950 4.5e-09 64.3 58 65.5
SGA_v2.0_scaffold7G03784 Striga asiatica HOM05D000070 ORTHO05D005950 4.5e-09 64.3 58 67.2
MSTRG.7181 Avicennia marina HOM05D000070 ORTHO05D005950 5.8e-09 63.9 58 69.0
BcaC04g21279 Brassica carinata HOM05D000147 ORTHO05D005950 5.8e-09 63.9 58 63.8
C09p33620 Brassica napus HOM05D000147 ORTHO05D005950 5.8e-09 63.9 58 63.8
BolC9t56196H Brassica oleracea HOM05D000147 ORTHO05D005950 5.8e-09 63.9 58 63.8
CsaV3_6G048710 Cucumis sativus L. HOM05D000070 ORTHO05D005950 5.8e-09 63.9 58 65.5
Sabra04G0002200 Salix brachista HOM05D000147 ORTHO05D005950 5.8e-09 63.9 71 57.7
Thhalv10028536m.g Eutrema salsugineum HOM05D000070 ORTHO05D005950 7.6e-09 63.5 58 63.8
Lalb_Chr15g0087801 Lupinus albus HOM05D000147 ORTHO05D005950 7.6e-09 63.5 58 69.0
RcHm_v2.0_Chr5g0002011 Rosa chinensis HOM05D000147 ORTHO05D005950 7.6e-09 63.5 58 65.5
vmacro03663 Vaccinium macrocarpon HOM05D000147 ORTHO05D005950 7.6e-09 63.5 58 67.2
Carub.0006s3209 Capsella rubella HOM05D000147 ORTHO05D005950 1.0e-08 63.2 58 63.8
Ca_00695_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005950 1.0e-08 63.2 58 65.5
DCAR_024984 Daucus carota HOM05D000147 ORTHO05D005950 1.0e-08 63.2 58 65.5
Lj6g0003893 Lotus japonicus HOM05D000147 ORTHO05D005950 1.0e-08 63.2 58 65.5
Pp3c15_4440 Physcomitrium patens HOM05D000147 ORTHO05D005950 1.0e-08 63.2 58 67.2
FvH4_3g01380 Fragaria vesca HOM05D000147 ORTHO05D005950 1.3e-08 62.8 58 63.8
Cc09_g01170 Coffea canephora HOM05D000070 ORTHO05D005950 1.7e-08 62.4 58 65.5
Phvul.006G145500 Phaseolus vulgaris HOM05D000147 ORTHO05D005950 1.7e-08 62.4 58 65.5
Nitab4.5_0000005g0030 Nicotiana tabacum HOM05D000070 ORTHO05D005950 2.2e-08 62.0 58 65.5
Nitab4.5_0005882g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005950 2.2e-08 62.0 58 65.5
Peaxi162Scf00294g00916 Petunia axillaris HOM05D000070 ORTHO05D005950 2.2e-08 62.0 58 65.5
Prupe.4G015000 Prunus persica HOM05D000147 ORTHO05D005950 2.2e-08 62.0 58 63.8
THA.LOC104813427 Tarenaya hassleriana HOM05D000147 ORTHO05D005950 2.2e-08 62.0 58 62.1
Thecc.06G228500 Theobroma cacao HOM05D000147 ORTHO05D005950 2.2e-08 62.0 58 63.8
CARHR253340 Cardamine hirsuta HOM05D000147 ORTHO05D005950 2.9e-08 61.6 57 63.2
Duzib235G0285 Durio zibethinus HOM05D000070 ORTHO05D005950 2.9e-08 61.6 58 62.1
Migut.M01369 Erythranthe guttata HOM05D000147 ORTHO05D005950 2.9e-08 61.6 58 63.8
MD10G1327000 Malus domestica HOM05D000147 ORTHO05D005950 2.9e-08 61.6 58 62.1
Solyc02g036330.3 Solanum lycopersicum HOM05D000070 ORTHO05D005950 2.9e-08 61.6 58 65.5
Sopen02g011700 Solanum pennellii HOM05D000070 ORTHO05D005950 2.9e-08 61.6 58 65.5
PGSC0003DMG402021461 Solanum tuberosum HOM05D000070 ORTHO05D005950 2.9e-08 61.6 58 65.5
Aqoxy1G02947 Aquilegia oxysepala HOM05D000147 ORTHO05D005950 3.8e-08 61.2 58 65.5
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 3.8e-08 61.2 58 63.8
Duzib160G0363 Durio zibethinus HOM05D002056 ORTHO05D005950 3.8e-08 61.2 58 63.8
Glyma.15G112100 Glycine max HOM05D000147 ORTHO05D005950 3.8e-08 61.2 58 60.3
VMungo0540G1662 Vigna mungo HOM05D000147 ORTHO05D005950 3.8e-08 61.2 58 63.8
CAN.G23.7 Capsicum annuum HOM05D000070 ORTHO05D005950 6.5e-08 60.5 58 63.8
ECA236G4610 Erigeron canadensis HOM05D002056 ORTHO05D005950 6.5e-08 60.5 58 63.8
HanXRQChr15g0470791 Helianthus annuus HOM05D000147 ORTHO05D005950 6.5e-08 60.5 58 63.8
FAN21G3947 Fragaria x ananassa HOM05D000147 ORTHO05D005950 8.4e-08 60.1 70 52.9
Lj1C1236T15 Lonicera japonica HOM05D000147 ORTHO05D005950 8.4e-08 60.1 58 63.8
Psat1g178560 Pisum sativum HOM05D000147 ORTHO05D005950 8.4e-08 60.1 58 62.1
SMO358G0508 Selaginella moellendorffii HOM05D000147 ORTHO05D005950 8.4e-08 60.1 57 59.6
FvH4_6g05890 Fragaria vesca HOM05D000147 ORTHO05D005950 1.1e-07 59.7 58 60.3
FAN05G0232 Fragaria x ananassa HOM05D000147 ORTHO05D005950 1.1e-07 59.7 58 60.3
FAN05G2764 Fragaria x ananassa HOM05D000070 ORTHO05D005950 1.1e-07 59.7 58 60.3
FAN09G4350 Fragaria x ananassa HOM05D000001 ORTHO05D005950 1.1e-07 59.7 58 60.3
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 1.1e-07 59.7 58 60.3
FAN14G4662 Fragaria x ananassa HOM05D000147 ORTHO05D005950 1.1e-07 59.7 58 60.3
SalBow8G0879 Salvia bowleyana HOM05D000070 ORTHO05D005950 1.1e-07 59.7 58 62.1
TPR.G13001 Trifolium pratense HOM05D000147 ORTHO05D005950 1.1e-07 59.7 58 60.3
Gohir.A06G151300 Gossypium hirsutum HOM05D000070 ORTHO05D005950 1.4e-07 59.3 58 63.8
Gohir.D06G157500 Gossypium hirsutum HOM05D000070 ORTHO05D005950 1.4e-07 59.3 58 63.8
Gorai.010G184000 Gossypium raimondii HOM05D000147 ORTHO05D005950 1.4e-07 59.3 58 63.8
Mapoly0087s0007 Marchantia polymorpha HOM05D000147 ORTHO05D005950 1.4e-07 59.3 58 62.1
Oeu002750.1 Olea europaea HOM05D000070 ORTHO05D005950 1.4e-07 59.3 58 63.8
GSVIVG01004814001 Vitis vinifera HOM05D000147 ORTHO05D005950 1.4e-07 59.3 58 63.8
GSVIVG01004817001 Vitis vinifera HOM05D000070 ORTHO05D005950 1.4e-07 59.3 58 63.8
Prupe.4G014800 Prunus persica HOM05D000147 ORTHO05D005950 7.1e-07 57.0 58 60.3
Lsat_1_v5_gn_7_14900 Lactuca sativa HOM05D000147 ORTHO05D005950 1.2e-06 56.2 54 64.8
Medtr2g024440 Medicago truncatula HOM05D000147 ORTHO05D005950 2.1e-06 55.5 58 56.9
unitig_748.g7944 Utricularia gibba HOM05D000070 ORTHO05D005950 4.6e-06 54.3 58 56.9


User provided reference genes

Program Settings