Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c42693 Carica papaya HOM05D003117 ORTHO05D003612 2.5e-62 241.9 116 100.0
Thecc.04G243500 Theobroma cacao HOM05D003117 ORTHO05D003612 9.3e-54 213.4 115 85.2
Dinv44609 Davidia involucrata HOM05D003117 ORTHO05D003612 3.5e-53 211.5 116 86.2
Duzib151G0985 Durio zibethinus HOM05D003117 ORTHO05D003612 1.0e-52 209.9 115 82.6
Gorai.006G245500 Gossypium raimondii HOM05D003117 ORTHO05D003612 1.8e-52 209.1 115 82.6
Gohir.A09G221900 Gossypium hirsutum HOM05D003117 ORTHO05D003612 3.0e-52 208.4 115 82.6
Rhsim04G0195100 Rhododendron simsii HOM05D003117 ORTHO05D003612 3.0e-52 208.4 116 85.3
Actinidia04495 Actinidia chinensis HOM05D003117 ORTHO05D003612 3.9e-52 208.0 116 83.6
Actinidia27515 Actinidia chinensis HOM05D003117 ORTHO05D003612 3.9e-52 208.0 116 83.6
CSS0025557 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 6.7e-52 207.2 116 83.6
CSS0037722 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 6.7e-52 207.2 116 83.6
TAR633G0296 Trochodendron aralioides HOM05D003117 ORTHO05D003612 6.7e-52 207.2 116 83.6
COL.COLO4_15764 Corchorus olitorius HOM05D003117 ORTHO05D003612 8.7e-52 206.8 115 82.6
Oeu064216.1 Olea europaea HOM05D003117 ORTHO05D003612 8.7e-52 206.8 116 81.9
Cfa008401 Carpinus fangiana HOM05D003117 ORTHO05D003612 1.5e-51 206.1 115 85.2
Gohir.D09G224000 Gossypium hirsutum HOM05D003117 ORTHO05D003612 1.9e-51 205.7 115 80.9
COL.COLO4_15763 Corchorus olitorius HOM05D003117 ORTHO05D003612 2.5e-51 205.3 115 82.6
MSTRG.9934 Avicennia marina HOM05D003117 ORTHO05D003612 3.3e-51 204.9 115 80.9
Ciclev10004325m.g Citrus clementina HOM05D003117 ORTHO05D003612 3.3e-51 204.9 115 80.9
Lj6C653G15 Lonicera japonica HOM05D003117 ORTHO05D003612 3.3e-51 204.9 116 82.8
QL06p014983 Quercus lobata HOM05D003117 ORTHO05D003612 4.3e-51 204.5 115 84.3
SGA_v2.0_scaffold88G27334 Striga asiatica HOM05D003117 ORTHO05D003612 4.3e-51 204.5 115 80.9
arahy.Tifrunner.gnm1.ann1.EG5LEH Arachis hypogaea HOM05D003117 ORTHO05D003612 7.4e-51 203.8 116 81.9
arahy.Tifrunner.gnm1.ann1.7J7E83 Arachis hypogaea HOM05D003117 ORTHO05D003612 1.3e-50 203.0 116 81.0
Haze_11267 Corylus avellana HOM05D003117 ORTHO05D003612 1.6e-50 202.6 115 85.2
Migut.G00413 Erythranthe guttata HOM05D003117 ORTHO05D003612 2.2e-50 202.2 115 81.7
Glyma.10G001100 Glycine max HOM05D003117 ORTHO05D003612 2.2e-50 202.2 116 81.0
MBI11_g15904_MAGBIO Magnolia biondii HOM05D003117 ORTHO05D003612 2.2e-50 202.2 115 80.9
Aqoxy5G00365 Aquilegia oxysepala HOM05D003117 ORTHO05D003612 2.8e-50 201.8 116 81.9
SalBow2G0949 Salvia bowleyana HOM05D003117 ORTHO05D003612 2.8e-50 201.8 115 80.0
Phvul.007G279900 Phaseolus vulgaris HOM05D003117 ORTHO05D003612 3.7e-50 201.4 116 81.0
THA.LOC104822254 Tarenaya hassleriana HOM05D003117 ORTHO05D003612 8.2e-50 200.3 116 82.8
Carub.0007s2764 Capsella rubella HOM05D003117 ORTHO05D003612 1.1e-49 199.9 116 82.8
QL06p015015 Quercus lobata HOM05D003117 ORTHO05D003612 1.1e-49 199.9 115 81.7
vmacro08397 Vaccinium macrocarpon HOM05D003117 ORTHO05D003612 1.1e-49 199.9 116 81.9
Thhalv10024477m.g Eutrema salsugineum HOM05D003117 ORTHO05D003612 1.4e-49 199.5 116 81.9
Prupe.1G026800 Prunus persica HOM05D003117 ORTHO05D003612 1.4e-49 199.5 116 81.0
AT4G14570 Arabidopsis thaliana HOM05D003117 ORTHO05D003612 2.4e-49 198.7 116 81.0
HanXRQChr12g0363751 Helianthus annuus HOM05D003117 ORTHO05D003612 3.1e-49 198.4 115 80.9
AL7G41570 Arabidopsis lyrata HOM05D003117 ORTHO05D003612 4.1e-49 198.0 116 81.0
CiPaw.01G192600 Carya illinoinensis HOM05D003117 ORTHO05D003612 4.1e-49 198.0 115 82.6
Lsat_1_v5_gn_5_67900 Lactuca sativa HOM05D003117 ORTHO05D003612 5.3e-49 197.6 116 80.2
FvH4_4g02060 Fragaria vesca HOM05D003117 ORTHO05D003612 9.0e-49 196.8 116 78.4
GSVIVG01018091001 Vitis vinifera HOM05D003117 ORTHO05D003612 9.0e-49 196.8 115 79.1
MELO3C014268.2 Cucumis melo HOM05D003117 ORTHO05D003612 1.2e-48 196.4 115 77.4
Eucgr.H00222 Eucalyptus grandis HOM05D003117 ORTHO05D003612 1.2e-48 196.4 116 76.7
Lalb_Chr03g0037631 Lupinus albus HOM05D003117 ORTHO05D003612 1.2e-48 196.4 116 78.4
MD16G1205300 Malus domestica HOM05D003117 ORTHO05D003612 1.2e-48 196.4 115 79.1
TPR.G22486 Trifolium pratense HOM05D003117 ORTHO05D003612 1.2e-48 196.4 116 78.4
VMungo0720G0420 Vigna mungo HOM05D003117 ORTHO05D003612 1.2e-48 196.4 116 78.4
CARHR220780 Cardamine hirsuta HOM05D003117 ORTHO05D003612 1.5e-48 196.1 116 80.2
CsaV3_2G013240 Cucumis sativus L. HOM05D003117 ORTHO05D003612 1.5e-48 196.1 115 76.5
PSO210G5858 Papaver somniferum HOM05D003117 ORTHO05D003612 1.5e-48 196.1 117 77.8
Psat0s4097g0040 Pisum sativum HOM05D003117 ORTHO05D003612 1.5e-48 196.1 116 78.4
RcHm_v2.0_Chr4g0389431 Rosa chinensis HOM05D003117 ORTHO05D003612 1.5e-48 196.1 116 77.6
unitig_748.g8319 Utricularia gibba HOM05D003117 ORTHO05D003612 1.5e-48 196.1 115 78.3
BcaC08g44280 Brassica carinata HOM05D003117 ORTHO05D003612 2.0e-48 195.7 116 78.4
C06p16990 Brassica napus HOM05D003117 ORTHO05D003612 2.0e-48 195.7 116 78.4
BolC6t36899H Brassica oleracea HOM05D003117 ORTHO05D003612 2.0e-48 195.7 116 78.4
Medtr1g040725 Medicago truncatula HOM05D003117 ORTHO05D003612 2.0e-48 195.7 116 78.4
Medtr5g042400 Medicago truncatula HOM05D003117 ORTHO05D003612 2.6e-48 195.3 116 78.4
Nn1g02533 Nelumbo nucifera HOM05D003117 ORTHO05D003612 2.6e-48 195.3 116 76.7
Solyc09g083130.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 2.6e-48 195.3 116 78.4
A05p16700 Brassica napus HOM05D003117 ORTHO05D003612 3.4e-48 194.9 116 78.4
Ca_12210_v3 Cicer arietinum L. HOM05D003117 ORTHO05D003612 3.4e-48 194.9 116 78.4
DCAR_030706 Daucus carota HOM05D003117 ORTHO05D003612 3.4e-48 194.9 116 75.9
Sabra08G0122300 Salix brachista HOM05D003117 ORTHO05D003612 3.4e-48 194.9 115 77.4
Sp7g12660 Schrenkiella parvula HOM05D003117 ORTHO05D003612 3.4e-48 194.9 116 79.3
ClCG06G006600 Citrullus lanatus HOM05D003117 ORTHO05D003612 4.5e-48 194.5 115 76.5
MD16G1205200 Malus domestica HOM05D003117 ORTHO05D003612 4.5e-48 194.5 116 75.9
PSO832G4175 Papaver somniferum HOM05D003117 ORTHO05D003612 4.5e-48 194.5 117 76.9
Potri.008G160400 Populus trichocarpa HOM05D003117 ORTHO05D003612 4.5e-48 194.5 115 77.4
PGR142G3261 Punica granatum HOM05D003117 ORTHO05D003612 4.5e-48 194.5 115 80.0
ATR0665G110 Amborella trichopoda HOM05D003117 ORTHO05D003612 5.9e-48 194.1 116 75.9
BraA05t20573Z Brassica rapa HOM05D003117 ORTHO05D003612 5.9e-48 194.1 116 78.4
Lj6C653G14 Lonicera japonica HOM05D003117 ORTHO05D003612 5.9e-48 194.1 116 78.4
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 7.7e-48 193.7 117 77.8
Sopen09g032010 Solanum pennellii HOM05D003117 ORTHO05D003612 1.0e-47 193.4 116 77.6
A08p11210 Brassica napus HOM05D003117 ORTHO05D003612 1.3e-47 193.0 116 79.3
BraA08t33117Z Brassica rapa HOM05D003117 ORTHO05D003612 1.3e-47 193.0 116 79.3
MD16G1205600 Malus domestica HOM05D003117 ORTHO05D003612 1.3e-47 193.0 115 78.3
TWI09G1508 Tripterygium wilfordii HOM05D003117 ORTHO05D003612 1.3e-47 193.0 115 77.4
BcaB04g18243 Brassica carinata HOM05D003117 ORTHO05D003612 1.7e-47 192.6 116 79.3
Lj6g0000554 Lotus japonicus HOM05D003117 ORTHO05D003612 1.7e-47 192.6 116 75.0
MD13G1203600 Malus domestica HOM05D003117 ORTHO05D003612 1.7e-47 192.6 116 77.6
Eucgr.H00221 Eucalyptus grandis HOM05D003117 ORTHO05D003612 2.2e-47 192.2 116 77.6
FAN12G0712 Fragaria x ananassa HOM05D003117 ORTHO05D003612 2.9e-47 191.8 116 75.0
FAN12G3237 Fragaria x ananassa HOM05D003117 ORTHO05D003612 2.9e-47 191.8 116 75.0
Lalb_Chr01g0020821 Lupinus albus HOM05D003117 ORTHO05D003612 3.8e-47 191.4 116 77.6
Nitab4.5_0001856g0030 Nicotiana tabacum HOM05D003117 ORTHO05D003612 3.8e-47 191.4 116 75.0
Psat6g136360 Pisum sativum HOM05D003117 ORTHO05D003612 3.8e-47 191.4 116 74.1
RcHm_v2.0_Chr4g0389461 Rosa chinensis HOM05D003117 ORTHO05D003612 3.8e-47 191.4 116 75.0
CAN.G749.36 Capsicum annuum HOM05D003117 ORTHO05D003612 6.5e-47 190.7 116 75.9
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 6.5e-47 190.7 116 78.4
Solyc09g083120.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 6.5e-47 190.7 116 75.9
CAN.G638.79 Capsicum annuum HOM05D003117 ORTHO05D003612 8.5e-47 190.3 115 76.5
CDE06G0682 Ceratophyllum demersum HOM05D003117 ORTHO05D003612 8.5e-47 190.3 116 76.7
FAN12G3229 Fragaria x ananassa HOM05D003117 ORTHO05D003612 8.5e-47 190.3 118 76.3
Ah.01g008550 Amaranthus hybridus HOM05D003117 ORTHO05D003612 1.1e-46 189.9 116 73.3
Sabra08G0122200 Salix brachista HOM05D003117 ORTHO05D003612 1.9e-46 189.1 115 74.8
Peaxi162Scf00019g03119 Petunia axillaris HOM05D003117 ORTHO05D003612 2.5e-46 188.7 116 75.0
Nitab4.5_0001856g0040 Nicotiana tabacum HOM05D003117 ORTHO05D003612 3.2e-46 188.3 116 74.1
PSO210G4691 Papaver somniferum HOM05D003117 ORTHO05D003612 3.2e-46 188.3 117 75.2
Sed0002710 Sechium edule HOM05D003117 ORTHO05D003612 3.2e-46 188.3 115 73.9
PGSC0003DMG400013444 Solanum tuberosum HOM05D003117 ORTHO05D003612 3.2e-46 188.3 115 74.8
Nitab4.5_0007585g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 4.2e-46 188.0 116 74.1
PGR142G2368 Punica granatum HOM05D003117 ORTHO05D003612 4.2e-46 188.0 116 75.0
BcaC07g37831 Brassica carinata HOM05D003117 ORTHO05D003612 5.5e-46 187.6 116 77.6
BolC8t48215H Brassica oleracea HOM05D003117 ORTHO05D003612 5.5e-46 187.6 116 77.6
PSO210G4228 Papaver somniferum HOM05D003117 ORTHO05D003612 5.5e-46 187.6 117 74.4
HPP92_024855 Vanilla planifolia HOM05D003117 ORTHO05D003612 5.5e-46 187.6 115 73.0
BcaC09g50117 Brassica carinata HOM05D003117 ORTHO05D003612 9.4e-46 186.8 116 76.7
C01p28830 Brassica napus HOM05D003117 ORTHO05D003612 9.4e-46 186.8 116 76.7
BolC1t02811H Brassica oleracea HOM05D003117 ORTHO05D003612 9.4e-46 186.8 116 76.7
BraA01t02227Z Brassica rapa HOM05D003117 ORTHO05D003612 9.4e-46 186.8 116 76.7
Sc25g0004180 Simmondsia chinensis HOM05D003117 ORTHO05D003612 9.4e-46 186.8 116 74.1
Solyc03g005340.4 Solanum lycopersicum HOM05D003117 ORTHO05D003612 9.4e-46 186.8 115 73.9
Sopen09g032000 Solanum pennellii HOM05D003117 ORTHO05D003612 9.4e-46 186.8 116 74.1
A01p23180 Brassica napus HOM05D003117 ORTHO05D003612 1.2e-45 186.4 116 75.9
Carub.0210s0001 Capsella rubella HOM05D003117 ORTHO05D003612 1.2e-45 186.4 116 75.9
FAN22G1146 Fragaria x ananassa HOM05D003117 ORTHO05D003612 1.2e-45 186.4 116 75.0
EL10Ac9g21398 Beta vulgaris HOM05D003117 ORTHO05D003612 2.1e-45 185.7 116 73.3
BcaNung00363 Brassica carinata HOM05D003117 ORTHO05D003612 2.1e-45 185.7 116 75.0
CANSAT78G2141 Cannabis sativa HOM05D003117 ORTHO05D003612 2.7e-45 185.3 113 76.1
Peaxi162Scf00788g00312 Petunia axillaris HOM05D003117 ORTHO05D003612 4.6e-45 184.5 116 72.4
SalBow2G2395 Salvia bowleyana HOM05D003117 ORTHO05D003612 4.6e-45 184.5 115 73.9
Aa31LG9G2760 Aethionema arabicum HOM05D003117 ORTHO05D003612 6.1e-45 184.1 114 76.3
Sopen03g001380 Solanum pennellii HOM05D003117 ORTHO05D003612 6.1e-45 184.1 115 73.9
Zm00001eb048000 Zea mays HOM05D003117 ORTHO05D003612 6.1e-45 184.1 115 71.3
Hund06426 Selenicereus undatus HOM05D003117 ORTHO05D003612 7.9e-45 183.7 116 73.3
TPR.G39892 Trifolium pratense HOM05D003117 ORTHO05D003612 7.9e-45 183.7 116 74.1
arahy.Tifrunner.gnm1.ann1.6YLS1K Arachis hypogaea HOM05D003117 ORTHO05D003612 1.0e-44 183.3 116 71.6
Cc03_g04630 Coffea canephora HOM05D003117 ORTHO05D003612 1.0e-44 183.3 116 70.7
Peaxi162Scf00578g00525 Petunia axillaris HOM05D003117 ORTHO05D003612 1.0e-44 183.3 116 74.1
Carub.0003s2319 Capsella rubella HOM05D003117 ORTHO05D003612 1.4e-44 183.0 116 75.0
PSO210G1820 Papaver somniferum HOM05D003117 ORTHO05D003612 1.8e-44 182.6 117 72.6
SMO347G0435 Selaginella moellendorffii HOM05D003117 ORTHO05D003612 2.3e-44 182.2 115 71.3
Glyma.10G001000 Glycine max HOM05D003117 ORTHO05D003612 5.1e-44 181.0 116 73.3
Lsat_1_v5_gn_5_67880 Lactuca sativa HOM05D003117 ORTHO05D003612 6.7e-44 180.6 116 72.4
AUR62027936 Chenopodium quinoa HOM05D003117 ORTHO05D003612 8.8e-44 180.3 114 71.9
Lalb_Chr03g0037941 Lupinus albus HOM05D003117 ORTHO05D003612 8.8e-44 180.3 116 73.3
Manes.15G035400 Manihot esculenta HOM05D003117 ORTHO05D003612 1.1e-43 179.9 116 73.3
Medtr5g042410 Medicago truncatula HOM05D003117 ORTHO05D003612 1.1e-43 179.9 116 72.4
AUR62013049 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.5e-43 179.5 114 70.2
Pp3c2_30720 Physcomitrium patens HOM05D003117 ORTHO05D003612 9.7e-43 176.8 115 68.7
VMungo0720G0109 Vigna mungo HOM05D003117 ORTHO05D003612 1.7e-42 176.0 116 69.8
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 2.8e-42 175.3 115 70.4
Psat6g102200 Pisum sativum HOM05D003117 ORTHO05D003612 4.8e-42 174.5 116 72.4
Pp3c7_25140 Physcomitrium patens HOM05D003117 ORTHO05D003612 1.1e-41 173.3 115 67.8
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.8e-41 172.6 114 68.4
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 1.8e-41 172.6 114 68.4
AagrBONN_evm.TU.Sc2ySwM_368.3180 Anthoceros agrestis HOM05D003117 ORTHO05D003612 1.5e-40 169.5 116 67.2
DCAR_027265 Daucus carota HOM05D003117 ORTHO05D003612 3.4e-40 168.3 116 71.6
AUR62010057 Chenopodium quinoa HOM05D003117 ORTHO05D003612 7.7e-40 167.2 145 56.6
Os10g0415800 Oryza sativa ssp. japonica HOM05D003117 ORTHO05D003612 7.7e-40 167.2 115 65.2
Pp3c12_21080 Physcomitrium patens HOM05D003117 ORTHO05D003612 2.5e-38 162.2 115 63.5
Zm00001eb223050 Zea mays HOM05D003117 ORTHO05D003612 3.2e-38 161.8 114 65.8
Manes.03G170200 Manihot esculenta HOM05D003117 ORTHO05D003612 4.7e-37 157.9 102 71.6
MD16G1205500 Malus domestica HOM05D003117 ORTHO05D003612 7.9e-37 157.1 94 74.5
CBR_g47 Chara braunii HOM05D003117 ORTHO05D003612 5.1e-36 154.5 115 60.0
CAN.G749.34 Capsicum annuum HOM05D003117 ORTHO05D003612 2.6e-35 152.1 93 75.3
FAN12G2567 Fragaria x ananassa HOM05D003117 ORTHO05D003612 8.2e-34 147.1 90 73.3
Phvul.007G280000 Phaseolus vulgaris HOM05D003117 ORTHO05D003612 3.1e-33 145.2 93 71.0
Prupe.8G050400 Prunus persica HOM05D000001 ORTHO05D009373 9.1e-33 143.7 96 68.8
FAN17G1347 Fragaria x ananassa HOM05D003117 ORTHO05D003612 1.0e-31 140.2 85 74.1
SHI00569 Sapria himalayana HOM05D003117 ORTHO05D003612 6.1e-29 131.0 86 68.6
Cre05.g241650 Chlamydomonas reinhardtii HOM05D003117 ORTHO05D003612 8.8e-28 127.1 116 49.1
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 3.7e-26 121.7 118 50.0
Nitab4.5_0013033g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 7.7e-24 114.0 115 53.9
PGSC0003DMG400006106 Solanum tuberosum HOM05D003117 ORTHO05D003612 1.3e-23 113.2 70 74.3
Nitab4.5_0007710g0050 Nicotiana tabacum HOM05D003117 ORTHO05D003612 3.8e-23 111.7 115 53.0
FAN22G0079 Fragaria x ananassa HOM05D000013 ORTHO05D000011 1.1e-22 110.2 66 74.2
PRCOL_00005468 Prasinoderma coloniale HOM05D003117 ORTHO05D003612 1.6e-21 106.3 110 47.3
Psat4g201840 Pisum sativum HOM05D003117 ORTHO05D003612 1.5e-19 99.8 70 67.1
CAN.G5.43 Capsicum annuum HOM05D002610 ORTHO05D003612 8.3e-18 94.0 67 62.7
HPP92_026601 Vanilla planifolia HOM05D003117 ORTHO05D003612 7.0e-17 90.9 51 78.4
CAN.G1652.1 Capsicum annuum HOM05D003117 ORTHO05D003612 9.1e-17 90.5 55 74.5
Lj6g0018324 Lotus japonicus HOM05D003117 ORTHO05D003612 9.4e-14 80.5 116 42.2
CAN.G665.24 Capsicum annuum HOM05D003117 ORTHO05D003612 4.0e-12 75.1 54 64.8
TPR.G28258 Trifolium pratense HOM05D003117 ORTHO05D003612 3.4e-11 72.0 42 76.2
Ciclev10018865m.g Citrus clementina HOM05D004658 ORTHO05D005927 7.2e-06 54.3 110 31.8


User provided reference genes

Program Settings