Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 6.4e-35 150.2 77 100.0
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 1.3e-22 109.4 76 75.0
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 1.6e-22 109.0 76 75.0
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.8e-22 108.2 62 85.5
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.8e-22 108.2 62 85.5
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 2.8e-22 108.2 62 85.5
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 8.2e-22 106.7 62 83.9
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 1.4e-21 105.9 62 85.5
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 1.4e-21 105.9 62 83.9
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 3.1e-21 104.8 76 73.7
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 3.1e-21 104.8 60 88.3
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 4.1e-21 104.4 62 83.9
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 4.1e-21 104.4 76 71.1
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 4.1e-21 104.4 60 86.7
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.1e-21 104.4 60 86.7
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.1e-21 104.4 60 86.7
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.1e-21 104.4 60 86.7
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 4.1e-21 104.4 60 88.3
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 4.1e-21 104.4 74 75.7
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 6.9e-21 103.6 62 82.3
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 6.9e-21 103.6 62 82.3
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 6.9e-21 103.6 76 72.4
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 6.9e-21 103.6 65 78.5
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 9.0e-21 103.2 63 87.3
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 9.0e-21 103.2 62 82.3
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 1.2e-20 102.8 59 86.4
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.2e-20 102.8 61 83.6
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 1.5e-20 102.4 62 80.6
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 1.5e-20 102.4 62 82.3
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.0e-20 102.1 60 85.0
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.0e-20 102.1 76 68.4
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 2.6e-20 101.7 77 66.2
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 2.6e-20 101.7 60 85.0
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 3.4e-20 101.3 62 79.0
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 3.4e-20 101.3 75 73.3
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 3.4e-20 101.3 63 85.7
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 3.4e-20 101.3 76 69.7
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 4.5e-20 100.9 70 71.4
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 5.9e-20 100.5 72 68.1
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 5.9e-20 100.5 61 82.0
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 5.9e-20 100.5 74 74.3
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 7.6e-20 100.1 60 83.3
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 7.6e-20 100.1 57 86.0
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.0e-19 99.8 63 84.1
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.0e-19 99.8 62 80.6
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 1.0e-19 99.8 61 80.3
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.3e-19 99.4 62 79.0
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 1.3e-19 99.4 62 79.0
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.3e-19 99.4 77 64.9
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.3e-19 99.4 57 86.0
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.3e-19 99.4 57 86.0
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 1.3e-19 99.4 57 86.0
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 1.3e-19 99.4 57 86.0
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 1.7e-19 99.0 62 77.4
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 2.2e-19 98.6 62 79.0
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 2.2e-19 98.6 62 79.0
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 2.2e-19 98.6 57 84.2
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 2.2e-19 98.6 77 68.8
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 2.2e-19 98.6 57 84.2
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.9e-19 98.2 68 69.1
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 2.9e-19 98.2 57 84.2
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 2.9e-19 98.2 61 78.7
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 2.9e-19 98.2 57 84.2
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 2.9e-19 98.2 57 84.2
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 3.8e-19 97.8 68 70.6
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 3.8e-19 97.8 68 70.6
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 3.8e-19 97.8 68 72.1
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 3.8e-19 97.8 68 72.1
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 3.8e-19 97.8 68 69.1
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 3.8e-19 97.8 65 76.9
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 5.0e-19 97.4 68 70.6
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 5.0e-19 97.4 68 72.1
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 5.0e-19 97.4 68 72.1
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 5.0e-19 97.4 68 72.1
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 5.0e-19 97.4 62 79.0
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 6.5e-19 97.1 68 70.6
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 6.5e-19 97.1 68 70.6
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 8.5e-19 96.7 62 75.8
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 8.5e-19 96.7 62 75.8
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 8.5e-19 96.7 56 83.9
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 1.1e-18 96.3 78 67.9
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.1e-18 96.3 57 84.2
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 1.1e-18 96.3 62 75.8
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 1.4e-18 95.9 57 78.9
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.4e-18 95.9 66 72.7
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 1.9e-18 95.5 68 69.1
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 1.9e-18 95.5 73 67.1
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 2.5e-18 95.1 68 67.6
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 2.5e-18 95.1 76 63.2
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 2.5e-18 95.1 62 74.2
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 2.5e-18 95.1 62 74.2
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 3.2e-18 94.7 69 68.1
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 4.2e-18 94.4 61 77.0
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 7.2e-18 93.6 61 75.4
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 9.3e-18 93.2 61 75.4
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 2.1e-17 92.0 68 66.2
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 2.7e-17 91.7 84 58.3
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 2.7e-17 91.7 70 65.7
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.6e-17 91.3 68 69.1
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 3.6e-17 91.3 62 72.6
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 3.6e-17 91.3 62 72.6
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 4.6e-17 90.9 62 79.0
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 4.6e-17 90.9 62 79.0
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 4.6e-17 90.9 76 65.8
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 7.9e-17 90.1 62 71.0
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 6.7e-16 87.0 62 71.0
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 8.7e-16 86.7 62 67.7
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 1.1e-15 86.3 57 77.2
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.5e-15 85.9 74 62.2
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 9.7e-15 83.2 62 67.7
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 1.3e-14 82.8 70 67.1
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 4.8e-14 80.9 57 70.2
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 6.3e-14 80.5 57 70.2
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 8.2e-14 80.1 74 64.9
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 2.4e-13 78.6 62 67.7
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 4.1e-13 77.8 80 55.0
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 2.2e-11 72.0 64 60.9
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 5.1e-08 60.8 82 51.2
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 8.8e-08 60.1 39 66.7
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 1.7e-06 55.8 61 54.1
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 4.8e-06 54.3 74 44.6


User provided reference genes

Program Settings