Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c42586 Carica papaya HOM05D005609 ORTHO05D043520 1.2e-32 142.5 66 100.0
Cpa.g.sc52.59 Carica papaya HOM05D005609 ORTHO05D006871 3.3e-19 97.8 66 72.7
Cfa022162 Carpinus fangiana HOM05D005609 ORTHO05D006871 2.4e-14 81.6 66 60.6
Dinv44009 Davidia involucrata HOM05D005609 ORTHO05D006871 9.2e-14 79.7 63 63.5
Thecc.02G366200 Theobroma cacao HOM05D005609 ORTHO05D006871 2.0e-13 78.6 66 59.1
Manes.05G059500 Manihot esculenta HOM05D005609 ORTHO05D006871 3.5e-13 77.8 66 59.1
Lj9A548T58 Lonicera japonica HOM05D005609 ORTHO05D006871 4.5e-13 77.4 62 62.9
GSVIVG01022468001 Vitis vinifera HOM05D005609 ORTHO05D006871 7.8e-13 76.6 63 60.3
Haze_02915 Corylus avellana HOM05D005609 ORTHO05D006871 1.0e-12 76.3 66 57.6
CSS0026157 Camellia sinensis var. sinensis HOM05D005609 ORTHO05D006871 1.3e-12 75.9 64 57.8
Actinidia05794 Actinidia chinensis HOM05D005609 ORTHO05D006871 2.3e-12 75.1 64 57.8
Oeu021960.2 Olea europaea HOM05D005609 ORTHO05D006871 2.3e-12 75.1 64 56.2
Hma1.2p1_1440F.1_g283520 Hydrangea macrophylla HOM05D005609 ORTHO05D006871 2.9e-12 74.7 62 59.7
Hma1.2p1_0973F.1_g243010 Hydrangea macrophylla HOM05D005609 ORTHO05D006871 5.0e-12 73.9 62 59.7
unitig_26.g8865 Utricularia gibba HOM05D005609 ORTHO05D006871 6.6e-12 73.6 62 58.1
Nn1g00634 Nelumbo nucifera HOM05D005609 ORTHO05D006871 8.6e-12 73.2 60 56.7
Rhsim07G0039900 Rhododendron simsii HOM05D005609 ORTHO05D006871 8.6e-12 73.2 64 54.7
BolC6t40388H Brassica oleracea HOM05D005609 ORTHO05D006871 1.5e-11 72.4 66 50.0
CANSAT25G0413 Cannabis sativa HOM05D005609 ORTHO05D006871 1.9e-11 72.0 62 56.5
Duzib268G1371 Durio zibethinus HOM05D005609 ORTHO05D006871 1.9e-11 72.0 66 53.0
RcHm_v2.0_Chr1g0343911 Rosa chinensis HOM05D005609 ORTHO05D006871 1.9e-11 72.0 63 54.0
THA.LOC104804469 Tarenaya hassleriana HOM05D005609 ORTHO05D006871 1.9e-11 72.0 66 54.5
BcaC08g47546 Brassica carinata HOM05D005609 ORTHO05D006871 2.5e-11 71.6 66 50.0
BraA07t31997Z Brassica rapa HOM05D005609 ORTHO05D006871 2.5e-11 71.6 66 50.0
Ciclev10020203m.g Citrus clementina HOM05D005609 ORTHO05D006871 2.5e-11 71.6 66 54.5
Atru.chr5.35 Acer truncatum HOM05D005609 ORTHO05D006871 3.3e-11 71.2 66 54.5
Atru.chr5.65 Acer truncatum HOM05D005609 ORTHO05D006871 3.3e-11 71.2 67 58.2
Sc26g0001790 Simmondsia chinensis HOM05D005609 ORTHO05D006871 3.3e-11 71.2 63 54.0
A07p44900 Brassica napus HOM05D005609 ORTHO05D006871 4.3e-11 70.9 66 50.0
COL.COLO4_11253 Corchorus olitorius HOM05D005609 ORTHO05D006871 4.3e-11 70.9 66 53.0
Prupe.2G114600 Prunus persica HOM05D005609 ORTHO05D006871 4.3e-11 70.9 62 54.8
MD07G1087900 Malus domestica HOM05D005609 ORTHO05D006871 9.5e-11 69.7 62 53.2
Nitab4.5_0000204g0040 Nicotiana tabacum HOM05D005609 ORTHO05D006871 9.5e-11 69.7 63 54.0
Nitab4.5_0011341g0010 Nicotiana tabacum HOM05D005609 ORTHO05D006871 9.5e-11 69.7 63 54.0
vmacro13537 Vaccinium macrocarpon HOM05D005609 ORTHO05D006871 1.2e-10 69.3 64 53.1
QL04p025874 Quercus lobata HOM05D005609 ORTHO05D006871 1.6e-10 68.9 62 54.8
ATR0665G596 Amborella trichopoda HOM05D005609 ORTHO05D006871 2.1e-10 68.6 62 54.8
BcaB02g07248 Brassica carinata HOM05D000537 ORTHO05D006871 2.1e-10 68.6 66 48.5
Migut.K00777 Erythranthe guttata HOM05D005609 ORTHO05D006871 2.1e-10 68.6 62 56.5
MD02G1225900 Malus domestica HOM05D005609 ORTHO05D006871 2.1e-10 68.6 62 53.2
SGA_v2.0_scaffold45G17248 Striga asiatica HOM05D005609 ORTHO05D006871 2.1e-10 68.6 63 54.0
Aqoxy3G02536 Aquilegia oxysepala HOM05D005609 ORTHO05D006871 2.8e-10 68.2 62 58.1
CiPaw.14G015500 Carya illinoinensis HOM05D005609 ORTHO05D006871 2.8e-10 68.2 64 56.2
Solyc09g090460.3 Solanum lycopersicum HOM05D005609 ORTHO05D006871 2.8e-10 68.2 63 54.0
Sopen09g033380 Solanum pennellii HOM05D005609 ORTHO05D006871 2.8e-10 68.2 63 54.0
TWI23G1015 Tripterygium wilfordii HOM05D005609 ORTHO05D006871 3.6e-10 67.8 66 53.0
Aqoxy7G01889 Aquilegia oxysepala HOM05D005609 ORTHO05D006871 4.7e-10 67.4 62 58.1
Gohir.D09G165100 Gossypium hirsutum HOM05D005609 ORTHO05D006871 4.7e-10 67.4 66 48.5
Gorai.006G186900 Gossypium raimondii HOM05D005609 ORTHO05D006871 4.7e-10 67.4 66 48.5
HanXRQChr02g0046691 Helianthus annuus HOM05D005609 ORTHO05D006871 4.7e-10 67.4 64 51.6
BcaC08g45338 Brassica carinata HOM05D005609 ORTHO05D006871 6.1e-10 67.0 66 47.0
BolC6t38114H Brassica oleracea HOM05D005609 ORTHO05D006871 6.1e-10 67.0 66 47.0
MSTRG.20658 Avicennia marina HOM05D005609 ORTHO05D006871 8.0e-10 66.6 63 47.6
C06p29500 Brassica napus HOM05D000537 ORTHO05D006871 8.0e-10 66.6 66 47.0
Psat3g155960 Pisum sativum HOM05D005609 ORTHO05D006871 8.0e-10 66.6 66 51.5
Sed0001863 Sechium edule HOM05D005609 ORTHO05D006871 8.0e-10 66.6 63 52.4
TAR375G0879 Trochodendron aralioides HOM05D005609 ORTHO05D006871 8.0e-10 66.6 58 56.9
CAN.G221.2 Capsicum annuum HOM05D005609 ORTHO05D006871 1.0e-09 66.2 63 50.8
FAN10G3233 Fragaria x ananassa HOM05D005609 ORTHO05D006871 1.4e-09 65.9 64 50.0
FAN10G3950 Fragaria x ananassa HOM05D005609 ORTHO05D006871 1.4e-09 65.9 64 50.0
Aa31LG4G1030 Aethionema arabicum HOM05D005609 ORTHO05D006871 1.8e-09 65.5 66 48.5
FvH4_7g08680 Fragaria vesca HOM05D005609 ORTHO05D006871 1.8e-09 65.5 63 50.8
FAN06G0131 Fragaria x ananassa HOM05D005609 ORTHO05D006871 1.8e-09 65.5 63 50.8
PSO063G0967 Papaver somniferum HOM05D005609 ORTHO05D006871 1.8e-09 65.5 58 48.3
Phvul.008G139400 Phaseolus vulgaris HOM05D005609 ORTHO05D006871 1.8e-09 65.5 66 48.5
Sp5g34990 Schrenkiella parvula HOM05D005609 ORTHO05D006871 2.3e-09 65.1 66 47.0
Thhalv10018566m.g Eutrema salsugineum HOM05D005609 ORTHO05D006871 3.1e-09 64.7 66 47.0
PGSC0003DMG402017205 Solanum tuberosum HOM05D005609 ORTHO05D006871 3.1e-09 64.7 63 52.4
A07p26850 Brassica napus HOM05D000537 ORTHO05D006871 4.0e-09 64.3 66 47.0
BraA07t30328Z Brassica rapa HOM05D005609 ORTHO05D006871 4.0e-09 64.3 66 47.0
CARHR073710 Cardamine hirsuta HOM05D005609 ORTHO05D006871 4.0e-09 64.3 66 47.0
PSO017G2814 Papaver somniferum HOM05D005609 ORTHO05D006871 5.2e-09 63.9 58 46.6
VMungo1080G0777 Vigna mungo HOM05D005609 ORTHO05D006871 5.2e-09 63.9 66 50.0
Cpa.g.sc24.96 Carica papaya HOM05D005609 ORTHO05D043520 6.8e-09 63.5 34 85.3
ClCG05G002820 Citrullus lanatus HOM05D005609 ORTHO05D006871 6.8e-09 63.5 63 50.8
ECA234G4049 Erigeron canadensis HOM05D005609 ORTHO05D006871 6.8e-09 63.5 64 48.4
Potri.002G134900 Populus trichocarpa HOM05D005609 ORTHO05D006871 6.8e-09 63.5 63 50.8
Eucgr.E03531 Eucalyptus grandis HOM05D005609 ORTHO05D006871 8.9e-09 63.2 64 50.0
Peaxi162Scf00103g01924 Petunia axillaris HOM05D005609 ORTHO05D006871 8.9e-09 63.2 64 53.1
TPR.G39143 Trifolium pratense HOM05D005609 ORTHO05D006871 8.9e-09 63.2 66 50.0
AT1G80770 Arabidopsis thaliana HOM05D005609 ORTHO05D006871 1.2e-08 62.8 66 45.5
Carub.0002s0078 Capsella rubella HOM05D005609 ORTHO05D006871 1.2e-08 62.8 66 45.5
Medtr7g450930 Medicago truncatula HOM05D005609 ORTHO05D006871 1.2e-08 62.8 66 48.5
arahy.Tifrunner.gnm1.ann1.R04L27 Arachis hypogaea HOM05D005609 ORTHO05D006871 1.5e-08 62.4 66 48.5
FAN03G3361 Fragaria x ananassa HOM05D005609 ORTHO05D006871 1.5e-08 62.4 63 49.2
AL2G40620 Arabidopsis lyrata HOM05D005609 ORTHO05D006871 2.0e-08 62.0 66 45.5
AUR62013794 Chenopodium quinoa HOM05D005609 ORTHO05D006871 2.0e-08 62.0 64 50.0
arahy.Tifrunner.gnm1.ann1.HS3HJE Arachis hypogaea HOM05D005609 ORTHO05D006871 3.4e-08 61.2 66 48.5
arahy.Tifrunner.gnm1.ann1.YDE99G Arachis hypogaea HOM05D005609 ORTHO05D006871 3.4e-08 61.2 66 48.5
Ca_20451_v3 Cicer arietinum L. HOM05D005609 ORTHO05D006871 3.4e-08 61.2 64 50.0
MELO3C006259.2 Cucumis melo HOM05D005609 ORTHO05D006871 3.4e-08 61.2 63 49.2
CsaV3_3G010350 Cucumis sativus L. HOM05D005609 ORTHO05D006871 3.4e-08 61.2 63 49.2
DCAR_029526 Daucus carota HOM05D005609 ORTHO05D006871 3.4e-08 61.2 62 48.4
AUR62023361 Chenopodium quinoa HOM05D005609 ORTHO05D006871 4.4e-08 60.8 64 48.4
arahy.Tifrunner.gnm1.ann1.HH0QF2 Arachis hypogaea HOM05D005609 ORTHO05D006871 7.5e-08 60.1 66 47.0
Lsat_1_v5_gn_4_38680 Lactuca sativa HOM05D005609 ORTHO05D006871 7.5e-08 60.1 62 46.8
Ah.16g103320 Amaranthus hybridus HOM05D005609 ORTHO05D006871 9.8e-08 59.7 64 50.0
Glyma.08G340000 Glycine max HOM05D005609 ORTHO05D006871 9.8e-08 59.7 64 46.9
Lj1g0022406 Lotus japonicus HOM05D005609 ORTHO05D006871 1.3e-07 59.3 66 45.5
PGR142G0047 Punica granatum HOM05D005609 ORTHO05D006871 2.2e-07 58.5 64 46.9
EL10Ac1g00709 Beta vulgaris HOM05D005609 ORTHO05D006871 2.9e-07 58.2 62 50.0
CDE02G3958 Ceratophyllum demersum HOM05D005609 ORTHO05D006871 3.7e-07 57.8 62 48.4
Hund17127 Selenicereus undatus HOM05D005609 ORTHO05D006871 3.7e-07 57.8 59 52.5
CDE11G0052 Ceratophyllum demersum HOM05D005609 ORTHO05D006871 6.4e-07 57.0 62 46.8
Zm00001eb415700 Zea mays HOM05D005609 ORTHO05D006871 8.3e-07 56.6 60 46.7
Lalb_Chr03g0040871 Lupinus albus HOM05D005609 ORTHO05D006871 1.4e-06 55.8 66 45.5
Os08g0158900 Oryza sativa ssp. japonica HOM05D005609 ORTHO05D006871 9.2e-06 53.1 59 47.5


User provided reference genes

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