Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 6.4e-26 119.8 53 100.0
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.2e-16 89.0 53 73.6
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.6e-16 88.6 53 71.7
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.5e-16 87.4 53 71.7
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 7.9e-16 86.3 53 71.7
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.8e-15 85.1 53 66.0
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 2.3e-15 84.7 53 69.8
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.0e-15 84.3 54 66.7
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 3.9e-15 84.0 53 67.9
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 5.1e-15 83.6 53 66.0
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.1e-15 83.6 53 66.0
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.1e-15 83.6 53 66.0
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.1e-15 83.6 53 66.0
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 1.1e-14 82.4 53 62.3
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.1e-14 82.4 53 66.0
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.1e-14 82.4 54 68.5
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.5e-14 82.0 53 66.0
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.9e-14 81.6 53 64.2
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.3e-14 80.9 53 62.3
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 7.4e-14 79.7 53 60.4
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.3e-13 79.0 51 64.7
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 1.3e-13 79.0 54 63.0
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.1e-13 78.2 53 60.4
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.1e-13 78.2 53 60.4
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 2.8e-13 77.8 53 60.4
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 2.8e-13 77.8 53 64.2
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 2.8e-13 77.8 56 60.7
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.7e-13 77.4 53 60.4
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.7e-13 77.4 53 60.4
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 8.1e-13 76.3 53 62.3
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 8.1e-13 76.3 53 62.3
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.1e-12 75.9 53 60.4
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 1.1e-12 75.9 53 64.2
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.1e-12 75.9 53 64.2
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.4e-12 75.5 53 62.3
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.4e-12 75.5 53 64.2
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 1.4e-12 75.5 53 60.4
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 1.8e-12 75.1 53 62.3
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.8e-12 75.1 53 60.4
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.8e-12 75.1 53 60.4
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 1.8e-12 75.1 53 60.4
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 2.4e-12 74.7 53 64.2
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 2.4e-12 74.7 53 56.6
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 3.1e-12 74.3 53 58.5
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 3.1e-12 74.3 53 62.3
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 3.1e-12 74.3 53 62.3
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 3.1e-12 74.3 53 62.3
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.1e-12 74.3 53 60.4
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 3.1e-12 74.3 54 57.4
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 4.0e-12 73.9 53 60.4
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 4.0e-12 73.9 51 64.7
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 5.3e-12 73.6 50 64.0
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 5.3e-12 73.6 53 58.5
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 6.9e-12 73.2 53 56.6
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.9e-12 73.2 53 56.6
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 6.9e-12 73.2 53 56.6
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-11 72.4 53 58.5
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.2e-11 72.4 53 56.6
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.5e-11 72.0 53 58.5
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.5e-11 72.0 53 58.5
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.5e-11 72.0 53 56.6
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 1.5e-11 72.0 53 52.8
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.5e-11 72.0 53 58.5
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 1.5e-11 72.0 53 56.6
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.5e-11 72.0 53 54.7
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.0e-11 71.6 53 54.7
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.6e-11 71.2 53 54.7
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 2.6e-11 71.2 53 56.6
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 2.6e-11 71.2 52 53.8
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 2.6e-11 71.2 53 58.5
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 3.4e-11 70.9 53 50.9
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 3.4e-11 70.9 54 55.6
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 3.4e-11 70.9 53 56.6
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 3.4e-11 70.9 53 56.6
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 3.4e-11 70.9 53 56.6
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 3.4e-11 70.9 53 56.6
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 4.5e-11 70.5 53 54.7
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 5.8e-11 70.1 53 54.7
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 5.8e-11 70.1 53 58.5
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 5.8e-11 70.1 53 56.6
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 7.6e-11 69.7 53 54.7
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 7.6e-11 69.7 53 54.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 9.9e-11 69.3 53 52.8
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 9.9e-11 69.3 53 52.8
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 9.9e-11 69.3 53 52.8
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 9.9e-11 69.3 52 53.8
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.9e-11 69.3 54 51.9
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 9.9e-11 69.3 53 54.7
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.3e-10 68.9 53 50.9
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 1.3e-10 68.9 53 50.9
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.7e-10 68.6 53 54.7
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.7e-10 68.6 50 58.0
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.7e-10 68.6 53 47.2
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 2.2e-10 68.2 53 50.9
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 2.2e-10 68.2 53 52.8
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.2e-10 68.2 50 58.0
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 2.2e-10 68.2 49 53.1
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 2.9e-10 67.8 53 49.1
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 2.9e-10 67.8 53 52.8
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.9e-10 67.8 53 54.7
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 3.8e-10 67.4 52 51.9
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 3.8e-10 67.4 53 49.1
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 3.8e-10 67.4 53 50.9
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 4.9e-10 67.0 52 51.9
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.9e-10 67.0 53 52.8
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 4.9e-10 67.0 53 49.1
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 6.4e-10 66.6 50 50.0
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 8.4e-10 66.2 50 56.0
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.1e-09 65.9 53 47.2
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.4e-09 65.5 53 49.1
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.4e-09 65.5 50 48.0
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.4e-09 65.5 47 53.2
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 1.9e-09 65.1 53 50.9
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 2.4e-09 64.7 55 49.1
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 5.5e-09 63.5 53 50.9
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 7.1e-09 63.2 52 46.2
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 7.1e-09 63.2 52 44.2
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 7.1e-09 63.2 53 47.2
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 9.3e-09 62.8 61 45.9
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.2e-08 62.4 48 54.2
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 4.6e-08 60.5 52 44.2
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 7.9e-08 59.7 50 44.0
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 7.9e-08 59.7 51 47.1
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.0e-07 59.3 52 55.8
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.0e-07 57.8 54 42.6
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 2.5e-06 54.7 52 42.3


User provided reference genes

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