Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 2.9e-146 521.9 270 100.0
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 1.8e-100 369.8 268 71.3
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 1.4e-92 343.6 268 67.5
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 2.2e-90 336.3 268 67.5
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 1.9e-89 333.2 268 66.8
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 4.3e-86 322.0 268 61.9
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 5.7e-86 321.6 276 66.7
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 8.2e-85 317.8 273 66.7
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 8.2e-85 317.8 268 64.2
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 1.1e-84 317.4 271 63.8
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 4.1e-84 315.5 273 62.6
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 6.9e-84 314.7 276 63.0
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 1.2e-83 313.9 274 62.8
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 2.0e-83 313.2 274 62.8
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 7.7e-83 311.2 271 63.8
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 2.2e-82 309.7 274 63.9
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 3.8e-82 308.9 267 61.8
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 1.1e-81 307.4 270 61.1
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 3.2e-81 305.8 245 67.3
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 9.4e-81 304.3 268 61.2
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 2.1e-80 303.1 283 60.4
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 2.7e-80 302.8 268 62.3
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 3.6e-80 302.4 262 61.1
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 1.4e-79 300.4 271 63.1
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 1.7e-74 283.5 271 56.8
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 2.2e-74 283.1 269 58.0
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 5.0e-74 282.0 269 59.9
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 1.4e-73 280.4 271 56.5
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 1.4e-73 280.4 273 55.7
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 3.2e-73 279.3 272 56.6
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 2.3e-71 273.1 276 56.5
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 2.3e-71 273.1 285 54.7
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 8.8e-71 271.2 263 54.8
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 2.6e-70 269.6 273 56.8
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 1.7e-69 266.9 279 55.6
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 2.4e-68 263.1 279 53.8
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 1.5e-67 260.4 272 53.3
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 2.0e-67 260.0 238 64.3
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 1.3e-66 257.3 272 54.8
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 2.9e-66 256.1 274 54.0
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 1.1e-65 254.2 189 70.9
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 2.5e-65 253.1 274 52.9
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 3.2e-65 252.7 268 53.7
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 7.2e-65 251.5 287 49.8
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 1.2e-64 250.8 247 59.9
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 2.1e-64 250.0 275 52.7
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 6.1e-64 248.4 280 49.6
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 4.0e-63 245.7 186 69.4
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 2.0e-62 243.4 216 59.3
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 5.7e-62 241.9 269 52.0
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 1.3e-61 240.7 189 66.1
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 2.2e-61 240.0 271 51.7
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 2.8e-61 239.6 284 52.1
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 2.8e-61 239.6 220 60.5
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 3.7e-61 239.2 297 50.5
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 3.7e-61 239.2 297 50.5
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 3.7e-61 239.2 220 60.5
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 8.2e-61 238.0 246 52.4
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 2.4e-60 236.5 250 52.0
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 1.2e-59 234.2 227 59.0
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 2.0e-59 233.4 200 61.5
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 1.3e-58 230.7 195 62.6
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 1.1e-57 227.6 245 54.7
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 9.4e-57 224.6 182 63.7
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 8.0e-56 221.5 272 50.7
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 8.0e-56 221.5 204 57.8
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 6.5e-50 201.8 280 45.0
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 9.4e-49 198.0 270 46.7
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 4.7e-48 195.7 277 43.3
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 5.2e-47 192.2 306 41.5
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 2.1e-40 170.2 190 49.5
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.4e-39 167.5 185 49.7
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 8.9e-39 164.9 189 48.7
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 2.4e-36 156.8 215 44.2
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 5.4e-36 155.6 121 62.8
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 2.5e-33 146.7 230 47.0
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 2.1e-24 117.1 198 39.9
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 1.2e-19 101.3 158 44.9
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 2.3e-18 97.1 82 58.5
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 3.6e-16 89.7 105 46.7
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 1.4e-15 87.8 58 82.8
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 5.8e-06 55.8 162 30.9


User provided reference genes

Program Settings