Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c41437 Carica papaya HOM05D003291 ORTHO05D116668 7.4e-17 89.4 42 100.0
Cpa.g.sc1124.3 Carica papaya HOM05D003291 ORTHO05D003923 3.5e-11 70.5 37 86.5
CiPaw.16G047600 Carya illinoinensis HOM05D003291 ORTHO05D003923 6.7e-10 66.2 37 81.1
Phvul.001G019800 Phaseolus vulgaris HOM05D003291 ORTHO05D003923 1.1e-09 65.5 37 81.1
Hma1.2p1_0260F.1_g104760 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 1.9e-09 64.7 37 78.4
Hma1.2p1_0337F.1_g129290 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 1.9e-09 64.7 37 78.4
SHI08307 Sapria himalayana HOM05D003291 ORTHO05D003923 1.9e-09 64.7 37 75.7
Glyma.14G080800 Glycine max HOM05D003291 ORTHO05D003923 2.5e-09 64.3 37 78.4
Lj5g0021120 Lotus japonicus HOM05D003291 ORTHO05D003923 2.5e-09 64.3 37 78.4
Lalb_Chr14g0368841 Lupinus albus HOM05D003291 ORTHO05D003923 2.5e-09 64.3 37 78.4
Lalb_Chr22g0355231 Lupinus albus HOM05D003291 ORTHO05D003923 2.5e-09 64.3 37 78.4
MBI03_g42553_MAGBIO Magnolia biondii HOM05D003291 ORTHO05D003923 2.5e-09 64.3 36 80.6
Nn1g05846 Nelumbo nucifera HOM05D003291 ORTHO05D003923 2.5e-09 64.3 37 75.7
Cfa018512 Carpinus fangiana HOM05D003291 ORTHO05D003923 3.3e-09 63.9 37 78.4
Haze_17564 Corylus avellana HOM05D003291 ORTHO05D003923 3.3e-09 63.9 37 78.4
PSO170G2235 Papaver somniferum HOM05D003291 ORTHO05D003923 3.3e-09 63.9 37 78.4
PSO210G0952 Papaver somniferum HOM05D003291 ORTHO05D003923 3.3e-09 63.9 37 78.4
Lj4C776G1 Lonicera japonica HOM05D003291 ORTHO05D003923 4.3e-09 63.5 37 78.4
Nn5g30207 Nelumbo nucifera HOM05D003291 ORTHO05D003923 4.3e-09 63.5 37 75.7
GSVIVG01009556001 Vitis vinifera HOM05D003291 ORTHO05D003923 4.3e-09 63.5 36 77.8
CDE03G0102 Ceratophyllum demersum HOM05D003291 ORTHO05D003923 5.6e-09 63.2 35 77.1
Ciclev10000140m.g Citrus clementina HOM05D003291 ORTHO05D003923 5.6e-09 63.2 36 80.6
Hma1.2p1_0114F.1_g055190 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 5.6e-09 63.2 37 75.7
DCAR_028414 Daucus carota HOM05D003291 ORTHO05D003923 7.4e-09 62.8 37 75.7
Medtr1g020000 Medicago truncatula HOM05D003291 ORTHO05D003923 9.6e-09 62.4 37 78.4
QL02p005806 Quercus lobata HOM05D003291 ORTHO05D003923 9.6e-09 62.4 37 75.7
Atru.chr13.635 Acer truncatum HOM05D003291 ORTHO05D003923 1.3e-08 62.0 36 77.8
CSS0046933 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 1.3e-08 62.0 37 75.7
Lsat_1_v5_gn_4_124081 Lactuca sativa HOM05D003291 ORTHO05D003923 1.3e-08 62.0 37 78.4
TAR625G0168 Trochodendron aralioides HOM05D003291 ORTHO05D003923 1.3e-08 62.0 37 75.7
CANSAT25G2224 Cannabis sativa HOM05D003291 ORTHO05D003923 1.6e-08 61.6 37 75.7
Dinv35983 Davidia involucrata HOM05D003291 ORTHO05D003923 1.6e-08 61.6 37 75.7
Glyma.17G244600 Glycine max HOM05D003291 ORTHO05D003923 1.6e-08 61.6 37 75.7
TPR.G13691 Trifolium pratense HOM05D003291 ORTHO05D003923 2.1e-08 61.2 37 75.7
DCAR_023940 Daucus carota HOM05D003291 ORTHO05D003923 2.8e-08 60.8 37 73.0
Manes.05G171000 Manihot esculenta HOM05D003291 ORTHO05D003923 2.8e-08 60.8 37 75.7
VMungo0647G0987 Vigna mungo HOM05D003291 ORTHO05D003923 2.8e-08 60.8 35 80.0
Aqoxy5G01279 Aquilegia oxysepala HOM05D003291 ORTHO05D003923 3.7e-08 60.5 37 70.3
Aqoxy6G01378 Aquilegia oxysepala HOM05D003291 ORTHO05D003923 3.7e-08 60.5 37 73.0
Eucgr.F02708 Eucalyptus grandis HOM05D003291 ORTHO05D003923 3.7e-08 60.5 38 71.1
RcHm_v2.0_Chr6g0307181 Rosa chinensis HOM05D003291 ORTHO05D003923 3.7e-08 60.5 37 75.7
Sabra14G0024400 Salix brachista HOM05D003291 ORTHO05D003923 3.7e-08 60.5 37 73.0
TWI56G0991 Tripterygium wilfordii HOM05D003291 ORTHO05D003923 3.7e-08 60.5 37 73.0
Sed0000864 Sechium edule HOM05D003291 ORTHO05D003923 4.8e-08 60.1 37 70.3
Actinidia27513 Actinidia chinensis HOM05D003291 ORTHO05D003923 6.2e-08 59.7 34 76.5
Actinidia38048 Actinidia chinensis HOM05D003291 ORTHO05D003923 6.2e-08 59.7 34 76.5
arahy.Tifrunner.gnm1.ann1.H8JSRB Arachis hypogaea HOM05D003291 ORTHO05D003923 6.2e-08 59.7 36 69.4
arahy.Tifrunner.gnm1.ann1.NP9S9N Arachis hypogaea HOM05D003291 ORTHO05D003923 6.2e-08 59.7 36 69.4
AUR62039319 Chenopodium quinoa HOM05D003291 ORTHO05D003923 6.2e-08 59.7 37 73.0
Duzib116G0711 Durio zibethinus HOM05D003291 ORTHO05D003923 6.2e-08 59.7 37 73.0
Gohir.A05G200600 Gossypium hirsutum HOM05D003291 ORTHO05D003923 6.2e-08 59.7 37 73.0
Gohir.D05G203800 Gossypium hirsutum HOM05D003291 ORTHO05D003923 6.2e-08 59.7 37 73.0
Gorai.009G209900 Gossypium raimondii HOM05D003291 ORTHO05D003923 6.2e-08 59.7 37 73.0
Psat6g012080 Pisum sativum HOM05D003291 ORTHO05D003923 6.2e-08 59.7 35 77.1
Thecc.08G012800 Theobroma cacao HOM05D003291 ORTHO05D003923 6.2e-08 59.7 37 73.0
AUR62022448 Chenopodium quinoa HOM05D003291 ORTHO05D003923 8.2e-08 59.3 37 70.3
Ca_13307_v3 Cicer arietinum L. HOM05D003291 ORTHO05D003923 8.2e-08 59.3 37 73.0
Duzib093G1598 Durio zibethinus HOM05D003291 ORTHO05D003923 8.2e-08 59.3 37 73.0
Rhsim06G0046900 Rhododendron simsii HOM05D003291 ORTHO05D003923 8.2e-08 59.3 35 77.1
Solyc04g079300.3 Solanum lycopersicum HOM05D003291 ORTHO05D003923 8.2e-08 59.3 37 73.0
Sopen04g032890 Solanum pennellii HOM05D003291 ORTHO05D003923 8.2e-08 59.3 37 73.0
PGSC0003DMG400008030 Solanum tuberosum HOM05D003291 ORTHO05D003923 8.2e-08 59.3 37 73.0
HPP92_016679 Vanilla planifolia HOM05D003291 ORTHO05D003923 8.2e-08 59.3 36 69.4
Actinidia15259 Actinidia chinensis HOM05D003291 ORTHO05D003923 1.1e-07 58.9 37 73.0
EL10Ac1g01777 Beta vulgaris HOM05D003291 ORTHO05D003923 1.1e-07 58.9 37 70.3
Oeu043547.1 Olea europaea HOM05D003291 ORTHO05D003923 1.1e-07 58.9 37 73.0
ClCG08G015660 Citrullus lanatus HOM05D003291 ORTHO05D003923 1.4e-07 58.5 37 70.3
MELO3C010890.2 Cucumis melo HOM05D003291 ORTHO05D003923 1.4e-07 58.5 37 70.3
CsaV3_2G028120 Cucumis sativus L. HOM05D003291 ORTHO05D003923 1.4e-07 58.5 37 70.3
HanXRQChr09g0267941 Helianthus annuus HOM05D003291 ORTHO05D003923 1.4e-07 58.5 37 70.3
Oeu009557.1 Olea europaea HOM05D003291 ORTHO05D003923 1.4e-07 58.5 37 73.0
TAR381G0638 Trochodendron aralioides HOM05D003291 ORTHO05D003923 1.4e-07 58.5 37 70.3
Dinv08769 Davidia involucrata HOM05D003291 ORTHO05D003923 1.8e-07 58.2 37 70.3
Eucgr.B02922 Eucalyptus grandis HOM05D003291 ORTHO05D003923 1.8e-07 58.2 38 65.8
MD00G1187500 Malus domestica HOM05D003291 ORTHO05D003923 1.8e-07 58.2 37 73.0
MD08G1106200 Malus domestica HOM05D003291 ORTHO05D003923 1.8e-07 58.2 37 73.0
Prupe.1G440500 Prunus persica HOM05D003291 ORTHO05D003923 1.8e-07 58.2 37 67.6
unitig_26.g9818 Utricularia gibba HOM05D003291 ORTHO05D003923 1.8e-07 58.2 35 74.3
COL.COLO4_26461 Corchorus olitorius HOM05D003291 ORTHO05D003923 2.4e-07 57.8 37 70.3
Gohir.A06G016600 Gossypium hirsutum HOM05D003291 ORTHO05D003923 2.4e-07 57.8 37 70.3
Gohir.D06G014700 Gossypium hirsutum HOM05D003291 ORTHO05D003923 2.4e-07 57.8 37 70.3
Gorai.010G017500 Gossypium raimondii HOM05D003291 ORTHO05D003923 2.4e-07 57.8 37 70.3
THA.LOC104806367 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 2.4e-07 57.8 35 74.3
Zm00001eb298290 Zea mays HOM05D003291 ORTHO05D003923 2.4e-07 57.8 35 71.4
AL7G30520 Arabidopsis lyrata HOM05D003291 ORTHO05D003923 3.1e-07 57.4 35 74.3
AT4G23000 Arabidopsis thaliana HOM05D003291 ORTHO05D003923 3.1e-07 57.4 35 74.3
CAN.G371.46 Capsicum annuum HOM05D003291 ORTHO05D003923 3.1e-07 57.4 37 73.0
ECA232G2639 Erigeron canadensis HOM05D003291 ORTHO05D003923 3.1e-07 57.4 40 65.0
Migut.C00602 Erythranthe guttata HOM05D003291 ORTHO05D003923 3.1e-07 57.4 37 70.3
HanXRQChr09g0267981 Helianthus annuus HOM05D003291 ORTHO05D003923 3.1e-07 57.4 37 70.3
HanXRQChr16g0507451 Helianthus annuus HOM05D003291 ORTHO05D003923 3.1e-07 57.4 37 70.3
THA.LOC104813013 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 3.1e-07 57.4 35 74.3
Ah.05g168860 Amaranthus hybridus HOM05D003291 ORTHO05D003923 4.0e-07 57.0 37 67.6
MSTRG.1333 Avicennia marina HOM05D003291 ORTHO05D003923 4.0e-07 57.0 37 70.3
A03p53920 Brassica napus HOM05D003291 ORTHO05D003923 4.0e-07 57.0 39 66.7
Cc10_g04020 Coffea canephora HOM05D003291 ORTHO05D003923 4.0e-07 57.0 37 67.6
HanXRQChr05g0152181 Helianthus annuus HOM05D003291 ORTHO05D003923 4.0e-07 57.0 37 70.3
Oeu006153.2 Olea europaea HOM05D003291 ORTHO05D003923 4.0e-07 57.0 35 74.3
Potri.014G034400 Populus trichocarpa HOM05D003291 ORTHO05D003923 4.0e-07 57.0 37 67.6
SGA_v2.0_scaffold208G42005 Striga asiatica HOM05D003291 ORTHO05D003923 4.0e-07 57.0 36 69.4
BcaB01g01679 Brassica carinata HOM05D003291 ORTHO05D003923 5.3e-07 56.6 35 71.4
A09p27310 Brassica napus HOM05D003291 ORTHO05D003923 5.3e-07 56.6 35 71.4
C09p34640 Brassica napus HOM05D003291 ORTHO05D003923 5.3e-07 56.6 35 71.4
BolC9t56309H Brassica oleracea HOM05D003291 ORTHO05D003923 5.3e-07 56.6 35 71.4
BraA09t38297Z Brassica rapa HOM05D003291 ORTHO05D003923 5.3e-07 56.6 35 71.4
MD15G1086800 Malus domestica HOM05D003291 ORTHO05D003923 5.3e-07 56.6 37 67.6
SalBow4G1770 Salvia bowleyana HOM05D003291 ORTHO05D003923 5.3e-07 56.6 37 70.3
SalBow6G1638 Salvia bowleyana HOM05D003291 ORTHO05D003923 5.3e-07 56.6 37 70.3
SalBow6G6854 Salvia bowleyana HOM05D003291 ORTHO05D003923 5.3e-07 56.6 37 70.3
Hund17590 Selenicereus undatus HOM05D003291 ORTHO05D003923 5.3e-07 56.6 37 70.3
vmacro21555 Vaccinium macrocarpon HOM05D003291 ORTHO05D003923 5.3e-07 56.6 35 74.3
AL6G46510 Arabidopsis lyrata HOM05D003291 ORTHO05D003923 6.9e-07 56.2 35 71.4
C07p52330 Brassica napus HOM05D003291 ORTHO05D003923 6.9e-07 56.2 35 71.4
BolC7t45726H Brassica oleracea HOM05D003291 ORTHO05D003923 6.9e-07 56.2 35 71.4
BraA03t14461Z Brassica rapa HOM05D003291 ORTHO05D003923 6.9e-07 56.2 35 71.4
CARHR230060 Cardamine hirsuta HOM05D003291 ORTHO05D003923 6.9e-07 56.2 35 71.4
ECA246G0633 Erigeron canadensis HOM05D003291 ORTHO05D003923 6.9e-07 56.2 35 74.3
Thhalv10024304m.g Eutrema salsugineum HOM05D003291 ORTHO05D003923 6.9e-07 56.2 35 71.4
FvH4_2g34860 Fragaria vesca HOM05D003291 ORTHO05D003923 6.9e-07 56.2 37 70.3
FAN15G0927 Fragaria x ananassa HOM05D003291 ORTHO05D003923 6.9e-07 56.2 37 70.3
FAN20G0796 Fragaria x ananassa HOM05D003291 ORTHO05D003923 6.9e-07 56.2 37 70.3
FAN27G0136 Fragaria x ananassa HOM05D003291 ORTHO05D003923 6.9e-07 56.2 37 70.3
Nitab4.5_0000068g0460 Nicotiana tabacum HOM05D003291 ORTHO05D003923 6.9e-07 56.2 37 70.3
Peaxi162Scf00528g00823 Petunia axillaris HOM05D003291 ORTHO05D003923 6.9e-07 56.2 37 70.3
PGR031G1546 Punica granatum HOM05D003291 ORTHO05D003923 6.9e-07 56.2 35 71.4
Sp7g21090 Schrenkiella parvula HOM05D003291 ORTHO05D003923 6.9e-07 56.2 37 67.6
Sc02g0006960 Simmondsia chinensis HOM05D003291 ORTHO05D003923 6.9e-07 56.2 35 74.3
THA.LOC104814278 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 6.9e-07 56.2 35 71.4
AT4G11800 Arabidopsis thaliana HOM05D003291 ORTHO05D003923 9.0e-07 55.8 35 71.4
HanXRQChr10g0304011 Helianthus annuus HOM05D003291 ORTHO05D003923 9.0e-07 55.8 35 71.4
SGA_v2.0_scaffold458G51943 Striga asiatica HOM05D003291 ORTHO05D003923 9.0e-07 55.8 37 67.6
A02p25980 Brassica napus HOM05D003291 ORTHO05D003923 1.2e-06 55.5 35 68.6
BraA02t07596Z Brassica rapa HOM05D003291 ORTHO05D003923 1.2e-06 55.5 35 68.6
Carub.0006s3091 Capsella rubella HOM05D003291 ORTHO05D003923 1.2e-06 55.5 35 71.4
Carub.0007s1827 Capsella rubella HOM05D003291 ORTHO05D003923 1.2e-06 55.5 35 71.4
CAN.G1422.3 Capsicum annuum HOM05D003291 ORTHO05D003923 1.2e-06 55.5 35 71.4
HanXRQChr02g0056101 Helianthus annuus HOM05D003291 ORTHO05D003923 1.2e-06 55.5 35 71.4
Nitab4.5_0005301g0010 Nicotiana tabacum HOM05D003291 ORTHO05D003923 1.2e-06 55.5 37 67.6
Os07g0106000 Oryza sativa ssp. japonica HOM05D003291 ORTHO05D003923 1.2e-06 55.5 35 68.6
Zm00001eb096290 Zea mays HOM05D003291 ORTHO05D003923 1.2e-06 55.5 35 65.7
ATR0709G069 Amborella trichopoda HOM05D003291 ORTHO05D003923 1.5e-06 55.1 35 68.6
CSS0020917 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 1.5e-06 55.1 35 71.4
CSS0029839 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 1.5e-06 55.1 35 71.4
Lsat_1_v5_gn_6_113580 Lactuca sativa HOM05D003291 ORTHO05D003923 2.0e-06 54.7 35 71.4
Lj4A52T42 Lonicera japonica HOM05D003291 ORTHO05D003923 2.0e-06 54.7 35 68.6
Solyc12g088920.2 Solanum lycopersicum HOM05D003291 ORTHO05D003923 2.0e-06 54.7 37 67.6
Sopen12g030820 Solanum pennellii HOM05D003291 ORTHO05D003923 2.0e-06 54.7 37 67.6
Nitab4.5_0000453g0160 Nicotiana tabacum HOM05D003291 ORTHO05D003923 2.6e-06 54.3 37 67.6
Nitab4.5_0011844g0020 Nicotiana tabacum HOM05D003291 ORTHO05D003923 2.6e-06 54.3 37 67.6
BcaC03g16327 Brassica carinata HOM05D003291 ORTHO05D003923 4.5e-06 53.5 35 65.7
C02p41460 Brassica napus HOM05D003291 ORTHO05D003923 4.5e-06 53.5 35 65.7
BolC2t10163H Brassica oleracea HOM05D003291 ORTHO05D003923 4.5e-06 53.5 35 65.7
Peaxi162Scf00064g00220 Petunia axillaris HOM05D003291 ORTHO05D003923 4.5e-06 53.5 37 64.9
QL02p005748 Quercus lobata HOM05D003291 ORTHO05D003923 4.5e-06 53.5 36 66.7
CARHR254510 Cardamine hirsuta HOM05D003291 ORTHO05D003923 7.6e-06 52.8 35 68.6
Thhalv10028387m.g Eutrema salsugineum HOM05D003291 ORTHO05D003923 7.6e-06 52.8 35 65.7
Sp6g05650 Schrenkiella parvula HOM05D003291 ORTHO05D003923 7.6e-06 52.8 35 65.7
unitig_578.g16531 Utricularia gibba HOM05D003291 ORTHO05D003923 7.6e-06 52.8 35 65.7
BcaB05g23806 Brassica carinata HOM05D003291 ORTHO05D003923 1.0e-05 52.4 35 65.7
Haze_17560 Corylus avellana HOM05D003291 ORTHO05D003923 1.0e-05 52.4 37 62.2


User provided reference genes

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