Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 4.5e-103 377.9 184 100.0
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.8e-91 339.3 184 91.8
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 1.5e-90 336.3 199 84.9
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 4.4e-90 334.7 200 84.5
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 3.7e-89 331.6 200 84.0
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 3.5e-87 325.1 199 82.9
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 3.5e-87 325.1 200 82.0
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 6.0e-87 324.3 203 82.3
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 1.3e-86 323.2 199 81.9
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.1e-85 320.1 199 81.9
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 5.6e-85 317.8 200 80.5
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.3e-85 317.4 200 80.5
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.3e-85 317.4 200 80.5
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 7.3e-85 317.4 199 80.4
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 4.7e-84 314.7 197 81.7
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 4.7e-84 314.7 199 79.9
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.3e-83 312.4 189 82.0
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 5.2e-83 311.2 183 85.2
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 8.9e-83 310.5 188 81.9
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 8.9e-83 310.5 188 81.9
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.6e-82 308.9 190 81.1
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 2.6e-82 308.9 190 81.1
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 2.6e-82 308.9 190 81.1
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 2.6e-82 308.9 190 82.1
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 2.6e-82 308.9 190 82.1
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 2.6e-82 308.9 190 82.1
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 7.5e-82 307.4 199 77.9
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 1.7e-81 306.2 188 81.9
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 1.7e-81 306.2 188 81.9
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 1.7e-81 306.2 188 81.9
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 8.3e-81 303.9 199 78.4
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 7.1e-80 300.8 187 81.3
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.1e-80 300.8 189 78.8
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.0e-78 297.0 190 77.9
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 8.6e-78 293.9 189 77.2
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 4.3e-77 291.6 189 77.2
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.7e-76 288.1 159 88.1
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.3e-75 285.8 184 77.2
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 5.2e-75 284.6 158 87.3
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 1.2e-74 283.5 148 91.9
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 2.6e-74 282.3 156 87.2
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 2.6e-74 282.3 176 81.8
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.3e-73 280.0 188 76.1
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 2.2e-73 279.3 148 90.5
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 3.7e-73 278.5 150 88.7
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-72 276.9 188 75.5
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.4e-72 276.6 146 91.1
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 2.4e-72 275.8 189 74.1
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.2e-72 273.9 189 72.0
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 1.6e-71 273.1 196 73.0
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 1.6e-71 273.1 196 73.0
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 1.0e-70 270.4 148 89.9
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.3e-70 270.0 148 88.5
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 6.6e-70 267.7 148 87.2
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.1e-68 262.7 153 84.3
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 8.9e-67 257.3 163 76.1
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 1.4e-64 250.0 164 77.4
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 1.5e-61 240.0 150 80.0
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 6.4e-57 224.6 129 82.2
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 6.4e-57 224.6 156 73.7
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 2.4e-56 222.6 149 75.2
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 6.0e-55 218.0 126 82.5
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 6.6e-54 214.5 197 60.9
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 9.6e-53 210.7 134 80.6
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-51 207.2 141 73.8
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 1.4e-51 206.8 114 86.8
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.6e-50 201.1 109 84.4
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 3.0e-46 189.1 203 55.7
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 3.0e-46 189.1 203 55.7
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 3.7e-44 182.2 140 71.4
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.9e-38 162.2 90 85.6
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 3.3e-37 159.1 111 73.9
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 7.4e-29 131.3 72 90.3
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 9.4e-24 114.4 91 64.8
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-21 107.1 131 49.6
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-21 106.3 67 79.1
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.4e-16 90.5 98 53.1
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 9.4e-16 87.8 56 71.4
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 6.1e-15 85.1 184 37.0
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.1e-13 80.9 54 72.2
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-13 80.5 64 67.2
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 1.6e-10 70.5 53 62.3
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.5e-10 69.3 40 85.0
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 5.9e-10 68.6 68 54.4
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.1e-08 64.3 33 90.9
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 5.5e-08 62.0 32 87.5


User provided reference genes

Program Settings