Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c40903 Carica papaya HOM05D005437 ORTHO05D006699 1.3e-15 85.1 39 100.0
Ciclev10004324m.g Citrus clementina HOM05D005437 ORTHO05D006699 3.9e-12 73.6 39 87.2
Haze_08578 Corylus avellana HOM05D005437 ORTHO05D006699 3.3e-11 70.5 38 78.9
Rhsim06G0239800 Rhododendron simsii HOM05D005437 ORTHO05D006699 5.6e-11 69.7 37 81.1
Atru.chr1.169 Acer truncatum HOM05D005437 ORTHO05D006699 1.6e-10 68.2 39 74.4
Atru.chr1.178 Acer truncatum HOM05D005437 ORTHO05D006699 1.6e-10 68.2 39 74.4
vmacro11674 Vaccinium macrocarpon HOM05D005437 ORTHO05D006699 1.6e-10 68.2 36 80.6
Nitab4.5_0001080g0010 Nicotiana tabacum HOM05D005437 ORTHO05D006699 3.6e-10 67.0 38 73.7
CiPaw.11G065200 Carya illinoinensis HOM05D005437 ORTHO05D006699 4.7e-10 66.6 35 82.9
Actinidia12783 Actinidia chinensis HOM05D005437 ORTHO05D006699 6.2e-10 66.2 37 75.7
FvH4_3g15600 Fragaria vesca HOM05D005437 ORTHO05D006699 6.2e-10 66.2 36 80.6
FAN11G3430 Fragaria x ananassa HOM05D005437 ORTHO05D006699 6.2e-10 66.2 36 80.6
FAN21G1213 Fragaria x ananassa HOM05D005437 ORTHO05D006699 6.2e-10 66.2 36 80.6
Thecc.07G149800 Theobroma cacao HOM05D005437 ORTHO05D006699 6.2e-10 66.2 35 85.7
TWI39G0192 Tripterygium wilfordii HOM05D005437 ORTHO05D006699 6.2e-10 66.2 35 80.0
AUR62011473 Chenopodium quinoa HOM05D005437 ORTHO05D006699 8.1e-10 65.9 37 75.7
FAN16G0636 Fragaria x ananassa HOM05D005437 ORTHO05D006699 8.1e-10 65.9 36 80.6
Oeu036617.1 Olea europaea HOM05D005437 ORTHO05D006699 8.1e-10 65.9 37 75.7
Lj3g0019331 Lotus japonicus HOM05D005437 ORTHO05D006699 1.1e-09 65.5 36 80.6
Potri.007G066400 Populus trichocarpa HOM05D005437 ORTHO05D006699 1.1e-09 65.5 36 77.8
QL04p076801 Quercus lobata HOM05D005437 ORTHO05D006699 1.1e-09 65.5 36 77.8
Duzib213G0844 Durio zibethinus HOM05D005437 ORTHO05D006699 1.4e-09 65.1 35 82.9
Hma1.2p1_0637F.1_g193450 Hydrangea macrophylla HOM05D005437 ORTHO05D006699 1.4e-09 65.1 37 73.0
Manes.06G173000 Manihot esculenta HOM05D005437 ORTHO05D006699 1.4e-09 65.1 34 82.4
AUR62016581 Chenopodium quinoa HOM05D005437 ORTHO05D006699 1.8e-09 64.7 36 75.0
FAN25G2633 Fragaria x ananassa HOM05D005437 ORTHO05D006699 1.8e-09 64.7 36 77.8
ClCG02G018530 Citrullus lanatus HOM05D005437 ORTHO05D006699 2.4e-09 64.3 35 82.9
Nitab4.5_0002321g0070 Nicotiana tabacum HOM05D005437 ORTHO05D006699 2.4e-09 64.3 38 68.4
Dinv19612 Davidia involucrata HOM05D005437 ORTHO05D006699 3.1e-09 63.9 37 73.0
RcHm_v2.0_Chr5g0026221 Rosa chinensis HOM05D005437 ORTHO05D006699 3.1e-09 63.9 36 77.8
Sabra07G0053300 Salix brachista HOM05D005437 ORTHO05D006699 3.1e-09 63.9 36 75.0
Nn7g37998 Nelumbo nucifera HOM05D005437 ORTHO05D006699 5.2e-09 63.2 35 80.0
arahy.Tifrunner.gnm1.ann1.K3W397 Arachis hypogaea HOM05D005437 ORTHO05D006699 6.9e-09 62.8 37 75.7
Glyma.09G002300 Glycine max HOM05D005437 ORTHO05D006699 6.9e-09 62.8 36 75.0
SHI21417 Sapria himalayana HOM05D005437 ORTHO05D006699 6.9e-09 62.8 36 75.0
CAN.G943.42 Capsicum annuum HOM05D005437 ORTHO05D006699 8.9e-09 62.4 37 67.6
COL.COLO4_36739 Corchorus olitorius HOM05D005437 ORTHO05D006699 8.9e-09 62.4 35 77.1
arahy.Tifrunner.gnm1.ann1.49XUJ3 Arachis hypogaea HOM05D005437 ORTHO05D006699 1.2e-08 62.0 37 75.7
MELO3C019659.2 Cucumis melo HOM05D005437 ORTHO05D006699 1.2e-08 62.0 35 80.0
Lalb_Chr01g0008201 Lupinus albus HOM05D005437 ORTHO05D006699 1.2e-08 62.0 36 77.8
VMungo1127G0204 Vigna mungo HOM05D005437 ORTHO05D006699 1.2e-08 62.0 38 71.1
Ca_19805_v3 Cicer arietinum L. HOM05D005437 ORTHO05D006699 1.5e-08 61.6 34 79.4
DCAR_009644 Daucus carota HOM05D005437 ORTHO05D006699 1.5e-08 61.6 37 70.3
Duzib268G1426 Durio zibethinus HOM05D005437 ORTHO05D006699 1.5e-08 61.6 35 77.1
Gohir.A01G039700 Gossypium hirsutum HOM05D005437 ORTHO05D006699 1.5e-08 61.6 34 79.4
MD05G1221200 Malus domestica HOM05D005437 ORTHO05D006699 1.5e-08 61.6 36 75.0
Phvul.011G216100 Phaseolus vulgaris HOM05D005437 ORTHO05D006699 1.5e-08 61.6 38 68.4
Prupe.4G138400 Prunus persica HOM05D005437 ORTHO05D006699 1.5e-08 61.6 36 75.0
PGR102G1747 Punica granatum HOM05D005437 ORTHO05D006699 1.5e-08 61.6 36 75.0
TPR.G34170 Trifolium pratense HOM05D005437 ORTHO05D006699 1.5e-08 61.6 39 69.2
Aqoxy1G01551_Aqoxy1G01552 Aquilegia oxysepala HOM05D005437 ORTHO05D006699 2.0e-08 61.2 36 72.2
Os06g0670000 Oryza sativa ssp. japonica HOM05D005437 ORTHO05D006699 2.0e-08 61.2 36 69.4
Peaxi162Scf00452g00721 Petunia axillaris HOM05D005437 ORTHO05D006699 2.0e-08 61.2 37 67.6
Psat7g228480 Pisum sativum HOM05D005437 ORTHO05D006699 2.0e-08 61.2 34 79.4
Ah.01g020370 Amaranthus hybridus HOM05D005437 ORTHO05D006699 2.6e-08 60.8 37 73.0
CSS0042223 Camellia sinensis var. sinensis HOM05D005437 ORTHO05D006699 2.6e-08 60.8 36 72.2
Cc05_g16200 Coffea canephora HOM05D005437 ORTHO05D006699 2.6e-08 60.8 35 77.1
PSO675G2460 Papaver somniferum HOM05D005437 ORTHO05D006699 2.6e-08 60.8 36 75.0
Sc20g0003070 Simmondsia chinensis HOM05D005437 ORTHO05D006699 2.6e-08 60.8 34 76.5
Gohir.D01G027500 Gossypium hirsutum HOM05D005437 ORTHO05D006699 4.4e-08 60.1 34 76.5
Gorai.002G036800 Gossypium raimondii HOM05D005437 ORTHO05D006699 4.4e-08 60.1 34 76.5
EL10Ac9g21866 Beta vulgaris HOM05D005437 ORTHO05D006699 7.6e-08 59.3 37 67.6
ECA236G0150 Erigeron canadensis HOM05D005437 ORTHO05D006699 7.6e-08 59.3 33 78.8
Eucgr.F01464 Eucalyptus grandis HOM05D005437 ORTHO05D006699 7.6e-08 59.3 36 66.7
Lsat_1_v5_gn_7_111601 Lactuca sativa HOM05D005437 ORTHO05D006699 1.3e-07 58.5 36 69.4
unitig_748.g7633 Utricularia gibba HOM05D005437 ORTHO05D006699 1.3e-07 58.5 37 67.6
GSVIVG01020355001 Vitis vinifera HOM05D005437 ORTHO05D006699 1.3e-07 58.5 36 69.4
Zm00001eb389990 Zea mays HOM05D005437 ORTHO05D006699 1.7e-07 58.2 33 72.7
Lj8A189G30 Lonicera japonica HOM05D005437 ORTHO05D006699 2.2e-07 57.8 36 69.4
SalBow8G5394 Salvia bowleyana HOM05D005437 ORTHO05D006699 2.2e-07 57.8 37 67.6
Zm00001eb274240 Zea mays HOM05D005437 ORTHO05D006699 2.9e-07 57.4 33 72.7
Solyc07g066480.3 Solanum lycopersicum HOM05D005437 ORTHO05D006699 3.8e-07 57.0 37 64.9
Sopen07g034660 Solanum pennellii HOM05D005437 ORTHO05D006699 3.8e-07 57.0 37 64.9
HanXRQChr11g0335011 Helianthus annuus HOM05D005437 ORTHO05D006699 4.9e-07 56.6 36 66.7
Migut.M01548 Erythranthe guttata HOM05D005437 ORTHO05D006699 1.9e-06 54.7 38 57.9
ATR0763G170 Amborella trichopoda HOM05D005437 ORTHO05D006699 2.4e-06 54.3 35 68.6
TAR626G0611 Trochodendron aralioides HOM05D005437 ORTHO05D006699 2.4e-06 54.3 36 63.9
Aa31LG7G1090 Aethionema arabicum HOM05D005437 ORTHO05D006699 4.2e-06 53.5 32 68.8
THA.LOC104812356 Tarenaya hassleriana HOM05D005437 ORTHO05D006699 7.1e-06 52.8 31 74.2
CANSAT80G2640 Cannabis sativa HOM05D005437 ORTHO05D006699 9.3e-06 52.4 36 61.1


User provided reference genes

Program Settings