Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 1.0e-123 446.8 233 100.0
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 5.0e-91 338.2 239 73.6
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.6e-89 333.2 234 74.8
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.4e-88 330.1 239 74.1
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 1.2e-87 327.0 238 73.1
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 3.7e-86 322.0 230 74.8
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 3.2e-85 318.9 232 72.4
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 9.2e-85 317.4 232 73.3
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.2e-84 317.0 239 68.6
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 1.3e-83 313.5 232 72.8
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 3.0e-83 312.4 230 73.0
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 3.9e-83 312.0 279 63.1
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 1.9e-82 309.7 222 74.8
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 1.9e-82 309.7 239 70.3
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 7.3e-82 307.8 239 69.9
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.6e-81 306.6 233 69.5
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 2.1e-81 306.2 239 69.5
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.1e-81 306.2 238 69.7
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 4.7e-81 305.1 239 69.5
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 8.1e-81 304.3 232 70.7
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 1.8e-80 303.1 225 74.7
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 1.2e-79 300.4 237 69.6
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 2.0e-79 299.7 232 67.2
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 4.4e-79 298.5 232 69.8
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 9.9e-79 297.4 239 68.2
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.9e-78 295.0 211 73.0
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 4.9e-78 295.0 210 74.3
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 8.4e-78 294.3 211 73.0
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 8.4e-78 294.3 211 73.0
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 1.4e-77 293.5 239 64.0
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.2e-77 292.4 244 65.2
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 9.2e-77 290.8 252 63.9
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.7e-76 289.3 243 66.7
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 2.7e-76 289.3 243 66.7
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 3.5e-76 288.9 198 76.8
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.6e-76 288.5 228 69.3
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 4.6e-76 288.5 234 66.7
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 6.0e-76 288.1 229 65.9
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 7.8e-76 287.7 238 66.4
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 5.1e-75 285.0 198 74.7
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 5.1e-75 285.0 196 75.0
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 6.6e-75 284.6 238 65.1
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 1.1e-74 283.9 198 75.3
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.1e-74 283.9 210 72.4
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.9e-74 283.1 238 64.3
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.9e-74 283.1 194 77.3
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.9e-74 283.1 254 63.4
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 1.9e-74 283.1 198 75.8
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 2.5e-74 282.7 239 65.3
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 3.3e-74 282.3 198 77.8
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.6e-73 280.0 225 64.9
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 8.1e-73 277.7 198 74.2
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 1.1e-72 277.3 219 67.1
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 1.8e-72 276.6 198 73.7
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 1.8e-72 276.6 210 69.0
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 2.4e-72 276.2 194 74.7
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 3.1e-72 275.8 194 75.3
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 1.5e-71 273.5 239 62.3
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 2.2e-70 269.6 239 63.6
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 6.4e-70 268.1 239 62.8
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 8.4e-70 267.7 232 63.8
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.9e-69 266.5 218 67.4
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 1.9e-69 266.5 214 65.4
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 2.4e-69 266.2 218 64.7
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 9.3e-69 264.2 198 70.7
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 9.3e-69 264.2 235 62.1
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 7.8e-68 261.2 232 62.5
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 7.8e-68 261.2 224 64.3
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.7e-67 260.0 219 64.4
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 3.0e-67 259.2 238 60.9
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 3.3e-66 255.8 240 60.0
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 2.8e-65 252.7 236 58.1
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 4.8e-65 251.9 198 67.7
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 8.1e-65 251.1 226 60.6
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 4.0e-64 248.8 232 59.9
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 5.3e-64 248.4 238 60.9
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 6.9e-64 248.1 198 66.7
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.2e-63 247.3 173 74.6
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 4.5e-63 245.4 199 66.8
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 5.8e-63 245.0 201 66.2
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.3e-62 243.8 206 64.6
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 1.3e-62 243.8 206 65.0
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 3.8e-62 242.3 201 65.7
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 6.4e-62 241.5 201 64.7
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 1.4e-61 240.4 203 65.5
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 1.4e-61 240.4 206 64.1
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.9e-61 240.0 199 65.8
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 5.4e-61 238.4 206 64.1
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.6e-60 236.9 229 58.1
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 3.5e-60 235.7 233 57.9
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 8.7e-59 231.1 201 62.2
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.8e-57 225.3 267 53.2
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 1.4e-56 223.8 189 61.4
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 1.3e-54 217.2 217 56.7
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 4.9e-54 215.3 185 63.2
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 4.9e-54 215.3 185 63.2
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 5.5e-53 211.8 218 54.6
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 2.1e-52 209.9 180 62.2
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.0e-51 207.6 183 63.4
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 8.7e-51 204.5 209 53.1
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 4.2e-45 185.7 208 54.8
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 4.2e-45 185.7 208 54.8
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 4.2e-45 185.7 208 54.8
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 1.8e-40 170.2 193 54.4
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 4.1e-40 169.1 192 47.9
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 4.5e-39 165.6 196 48.5
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 3.0e-35 152.9 186 47.3
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 2.2e-30 136.7 197 40.6
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 7.4e-26 121.7 100 60.0
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 3.1e-24 116.3 91 65.9
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 1.4e-21 107.5 154 39.6
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.3e-11 73.6 78 56.4
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 2.8e-09 66.6 71 54.9


User provided reference genes

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