Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 2.5e-40 168.3 84 100.0
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.9e-19 99.0 102 56.9
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 3.5e-18 94.7 98 57.1
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 3.5e-18 94.7 90 61.1
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.3e-17 92.8 94 54.3
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 1.3e-17 92.8 103 54.4
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 1.3e-17 92.8 91 58.2
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 2.3e-17 92.0 90 60.0
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 3.0e-17 91.7 96 57.3
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 3.0e-17 91.7 98 53.1
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 3.0e-17 91.7 98 53.1
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 3.9e-17 91.3 85 58.8
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 5.1e-17 90.9 80 60.0
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 1.1e-16 89.7 94 55.3
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 2.5e-16 88.6 94 55.3
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 4.3e-16 87.8 98 52.0
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 4.3e-16 87.8 92 53.3
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 5.6e-16 87.4 94 54.3
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 5.6e-16 87.4 89 56.2
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 2.1e-15 85.5 97 55.7
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 2.8e-15 85.1 94 58.5
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 3.6e-15 84.7 96 51.0
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 4.7e-15 84.3 79 58.2
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 6.2e-15 84.0 95 50.5
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 1.4e-14 82.8 94 54.3
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 1.4e-14 82.8 93 53.8
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.4e-14 82.8 93 51.6
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 1.8e-14 82.4 98 46.9
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 3.1e-14 81.6 92 52.2
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 3.1e-14 81.6 96 53.1
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 3.1e-14 81.6 72 61.1
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 4.0e-14 81.3 85 56.5
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 5.2e-14 80.9 104 51.0
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 6.8e-14 80.5 94 53.2
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 6.8e-14 80.5 97 47.4
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 8.9e-14 80.1 103 48.5
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 8.9e-14 80.1 93 53.8
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.2e-13 79.7 90 51.1
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 2.0e-13 79.0 84 54.8
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 2.6e-13 78.6 88 56.8
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 3.4e-13 78.2 92 50.0
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 4.4e-13 77.8 92 55.4
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 4.4e-13 77.8 97 48.5
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 7.6e-13 77.0 104 49.0
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 9.9e-13 76.6 85 54.1
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 1.3e-12 76.3 82 56.1
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 1.7e-12 75.9 94 47.9
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.7e-12 75.9 106 48.1
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.2e-12 75.5 89 47.2
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 2.2e-12 75.5 90 47.8
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 2.2e-12 75.5 93 52.7
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 2.2e-12 75.5 93 53.8
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 4.9e-12 74.3 91 49.5
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 4.9e-12 74.3 78 53.8
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 6.4e-12 73.9 98 43.9
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 8.4e-12 73.6 73 58.9
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 2.4e-11 72.0 94 48.9
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 3.2e-11 71.6 91 52.7
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 4.1e-11 71.2 103 46.6
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 5.4e-11 70.9 98 49.0
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 7.1e-11 70.5 95 43.2
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 7.1e-11 70.5 93 48.4
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 9.2e-11 70.1 98 50.0
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 9.2e-11 70.1 98 50.0
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 1.2e-10 69.7 78 51.3
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 1.2e-10 69.7 92 45.7
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.6e-10 69.3 98 49.0
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 1.6e-10 69.3 93 48.4
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 2.7e-10 68.6 78 50.0
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 2.7e-10 68.6 78 50.0
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 3.5e-10 68.2 92 46.7
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 4.6e-10 67.8 78 51.3
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 4.6e-10 67.8 78 48.7
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 4.6e-10 67.8 94 48.9
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 6.0e-10 67.4 77 48.1
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 1.7e-09 65.9 80 48.8
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 2.3e-09 65.5 75 45.3
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 2.3e-09 65.5 78 48.7
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 3.0e-09 65.1 81 51.9
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 3.0e-09 65.1 103 44.7
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 3.0e-09 65.1 94 47.9
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 3.9e-09 64.7 94 47.9
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 5.1e-09 64.3 94 43.6
AL4G34680 Arabidopsis lyrata HOM05D009505 ORTHO05D007552 5.1e-09 64.3 77 50.6
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 5.1e-09 64.3 99 49.5
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 1.5e-08 62.8 78 50.0
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 1.5e-08 62.8 78 50.0
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 1.5e-08 62.8 78 48.7
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 1.5e-08 62.8 78 48.7
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 1.5e-08 62.8 79 48.1
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 1.5e-08 62.8 94 42.6
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 1.9e-08 62.4 82 46.3
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 3.3e-08 61.6 74 52.7
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 4.3e-08 61.2 78 50.0
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 5.6e-08 60.8 90 45.6
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 5.6e-08 60.8 85 49.4
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 7.3e-08 60.5 82 46.3
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 1.6e-07 59.3 80 48.8
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 1.6e-07 59.3 55 58.2
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 1.6e-07 59.3 47 63.8
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 1.4e-06 56.2 79 45.6
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 1.8e-06 55.8 93 41.9
BcaC01g05595 Brassica carinata HOM05D009505 ORTHO05D007552 2.4e-06 55.5 75 49.3
BcaC01g05596 Brassica carinata HOM05D009505 ORTHO05D007552 2.4e-06 55.5 75 49.3
A05p08210 Brassica napus HOM05D009505 ORTHO05D007552 2.4e-06 55.5 79 45.6
C03p24490 Brassica napus HOM05D009505 ORTHO05D007552 2.4e-06 55.5 75 49.3
BolC3t14847H Brassica oleracea HOM05D009505 ORTHO05D007552 2.4e-06 55.5 75 49.3
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 9.0e-06 53.5 92 41.3


User provided reference genes

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