Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c39194 Carica papaya HOM05D006073 ORTHO05D007354 4.2e-30 134.0 68 100.0
Medtr7g080410 Medicago truncatula HOM05D006073 ORTHO05D007354 1.5e-19 99.0 52 92.3
GSVIVG01019056001 Vitis vinifera HOM05D006073 ORTHO05D007354 1.3e-18 95.9 52 88.5
CiPaw.08G113900 Carya illinoinensis HOM05D006073 ORTHO05D007354 3.7e-18 94.4 53 84.9
MD04G1247200 Malus domestica HOM05D006073 ORTHO05D007354 3.7e-18 94.4 52 88.5
QL01p048139 Quercus lobata HOM05D011240 ORTHO05D014254 3.7e-18 94.4 74 67.6
RcHm_v2.0_Chr3g0447581 Rosa chinensis HOM05D006073 ORTHO05D007354 3.7e-18 94.4 52 88.5
TAR362G0748 Trochodendron aralioides HOM05D006073 ORTHO05D007354 4.8e-18 94.0 52 86.5
FvH4_6g00210 Fragaria vesca HOM05D006073 ORTHO05D007354 8.3e-18 93.2 52 86.5
FAN02G0094 Fragaria x ananassa HOM05D006073 ORTHO05D007354 8.3e-18 93.2 52 86.5
FAN09G2337 Fragaria x ananassa HOM05D006073 ORTHO05D007354 8.3e-18 93.2 52 86.5
FAN14G3812 Fragaria x ananassa HOM05D006073 ORTHO05D007354 8.3e-18 93.2 52 86.5
Gohir.D13G093300 Gossypium hirsutum HOM05D006073 ORTHO05D007354 8.3e-18 93.2 52 86.5
Gorai.010G140700 Gossypium raimondii HOM05D006073 ORTHO05D007354 8.3e-18 93.2 52 86.5
Cfa006241 Carpinus fangiana HOM05D006073 ORTHO05D007354 1.1e-17 92.8 52 86.5
VMungo1383G1723 Vigna mungo HOM05D006073 ORTHO05D007354 1.4e-17 92.4 52 82.7
Sabra13G0079000 Salix brachista HOM05D006073 ORTHO05D007354 1.8e-17 92.0 52 82.7
Thecc.05G186400 Theobroma cacao HOM05D006073 ORTHO05D007354 1.8e-17 92.0 69 66.7
ClCG11G009880 Citrullus lanatus HOM05D006073 ORTHO05D007354 2.4e-17 91.7 52 84.6
Gohir.A13G089700 Gossypium hirsutum HOM05D006073 ORTHO05D007354 2.4e-17 91.7 52 84.6
TPR.G32007 Trifolium pratense HOM05D006073 ORTHO05D007354 2.4e-17 91.7 52 84.6
Atru.chr12.1713 Acer truncatum HOM05D006073 ORTHO05D007354 3.1e-17 91.3 52 84.6
CsaV3_2G010510 Cucumis sativus L. HOM05D006073 ORTHO05D007354 3.1e-17 91.3 52 84.6
Psat3g102360 Pisum sativum HOM05D006073 ORTHO05D007354 3.1e-17 91.3 52 84.6
Aqoxy5G00030 Aquilegia oxysepala HOM05D006073 ORTHO05D007354 4.1e-17 90.9 52 84.6
CSS0044721 Camellia sinensis var. sinensis HOM05D006073 ORTHO05D007354 5.3e-17 90.5 50 86.0
Lalb_Chr01g0020611 Lupinus albus HOM05D006073 ORTHO05D007354 5.3e-17 90.5 50 84.0
Phvul.008G052300 Phaseolus vulgaris HOM05D006073 ORTHO05D007354 5.3e-17 90.5 49 83.7
Actinidia03261 Actinidia chinensis HOM05D006073 ORTHO05D007354 7.0e-17 90.1 50 84.0
CSS0026124 Camellia sinensis var. sinensis HOM05D006073 ORTHO05D007354 7.0e-17 90.1 50 84.0
Ca_08006_v3 Cicer arietinum L. HOM05D006073 ORTHO05D007354 7.0e-17 90.1 52 82.7
Dinv29081 Davidia involucrata HOM05D006073 ORTHO05D007354 7.0e-17 90.1 50 84.0
FAN05G2946 Fragaria x ananassa HOM05D006073 ORTHO05D007354 7.0e-17 90.1 52 84.6
Prupe.6G363500 Prunus persica HOM05D006073 ORTHO05D007354 7.0e-17 90.1 52 80.8
PGR031G2992 Punica granatum HOM05D006073 ORTHO05D007354 7.0e-17 90.1 52 84.6
Atru.chr12.1709 Acer truncatum HOM05D006073 ORTHO05D007354 9.1e-17 89.7 52 82.7
Glyma.18G244400 Glycine max HOM05D006073 ORTHO05D007354 9.1e-17 89.7 52 82.7
Potri.013G084100 Populus trichocarpa HOM05D006073 ORTHO05D007354 9.1e-17 89.7 52 80.8
Sed0013853 Sechium edule HOM05D006073 ORTHO05D007354 9.1e-17 89.7 52 80.8
Nn7g37577 Nelumbo nucifera HOM05D006073 ORTHO05D007354 1.2e-16 89.4 52 82.7
Lj1g0021473 Lotus japonicus HOM05D006073 ORTHO05D007354 1.6e-16 89.0 52 82.7
Duzib177G0479 Durio zibethinus HOM05D006073 ORTHO05D007354 2.7e-16 88.2 52 80.8
Hma1.2p1_0220F.1_g092975 Hydrangea macrophylla HOM05D006073 ORTHO05D007354 2.7e-16 88.2 49 83.7
SalBow6G2286 Salvia bowleyana HOM05D006073 ORTHO05D007354 2.7e-16 88.2 52 82.7
Peaxi162Scf00619g00047 Petunia axillaris HOM05D006073 ORTHO05D007354 3.5e-16 87.8 52 78.8
SGA_v2.0_scaffold340G49309 Striga asiatica HOM05D006073 ORTHO05D007354 3.5e-16 87.8 52 78.8
Glyma.09G248400 Glycine max HOM05D006073 ORTHO05D007354 4.5e-16 87.4 52 78.8
Eucgr.B01463 Eucalyptus grandis HOM05D006073 ORTHO05D007354 7.7e-16 86.7 52 82.7
Manes.12G003200 Manihot esculenta HOM05D006073 ORTHO05D007354 7.7e-16 86.7 50 82.0
TWI36G0432 Tripterygium wilfordii HOM05D006073 ORTHO05D007354 1.0e-15 86.3 52 80.8
TWI36G1249 Tripterygium wilfordii HOM05D006073 ORTHO05D007354 1.0e-15 86.3 52 80.8
arahy.Tifrunner.gnm1.ann1.8XTP9K Arachis hypogaea HOM05D006073 ORTHO05D007354 1.3e-15 85.9 53 79.2
CANSAT54G1250 Cannabis sativa HOM05D006073 ORTHO05D007354 1.3e-15 85.9 52 76.9
Manes.13G003100 Manihot esculenta HOM05D006073 ORTHO05D007354 1.7e-15 85.5 49 81.6
AUR62006634 Chenopodium quinoa HOM05D006073 ORTHO05D007354 2.2e-15 85.1 49 81.6
Lsat_1_v5_gn_0_14680 Lactuca sativa HOM05D006073 ORTHO05D007354 2.2e-15 85.1 49 77.6
Cc09_g03950 Coffea canephora HOM05D006073 ORTHO05D007354 2.9e-15 84.7 49 79.6
Ciclev10012181m.g Citrus clementina HOM05D006073 ORTHO05D007354 5.0e-15 84.0 53 81.1
arahy.Tifrunner.gnm1.ann1.T416DT Arachis hypogaea HOM05D006073 ORTHO05D007354 6.5e-15 83.6 53 75.5
ECA232G0690 Erigeron canadensis HOM05D006073 ORTHO05D007354 6.5e-15 83.6 49 73.5
CAN.G29.19 Capsicum annuum HOM05D006073 ORTHO05D007354 8.5e-15 83.2 49 77.6
EL10Ac4g10008 Beta vulgaris HOM05D006073 ORTHO05D007354 1.1e-14 82.8 49 79.6
HanXRQChr16g0511831 Helianthus annuus HOM05D006073 ORTHO05D007354 1.1e-14 82.8 49 73.5
Oeu062042.2 Olea europaea HOM05D006073 ORTHO05D007354 1.1e-14 82.8 49 77.6
PSO210G7364 Papaver somniferum HOM05D006073 ORTHO05D007354 1.1e-14 82.8 53 77.4
PSO832G0210 Papaver somniferum HOM05D006073 ORTHO05D007354 1.1e-14 82.8 53 77.4
Rhsim05G0165500 Rhododendron simsii HOM05D006073 ORTHO05D007354 1.1e-14 82.8 50 76.0
Sc16g0010500 Simmondsia chinensis HOM05D006073 ORTHO05D007354 1.1e-14 82.8 49 77.6
Hund07366 Selenicereus undatus HOM05D006073 ORTHO05D007354 1.5e-14 82.4 49 81.6
Solyc04g024590.3 Solanum lycopersicum HOM05D006073 ORTHO05D007354 3.2e-14 81.3 52 71.2
Sopen04g010570 Solanum pennellii HOM05D006073 ORTHO05D007354 3.2e-14 81.3 52 71.2
MSTRG.8201 Avicennia marina HOM05D006073 ORTHO05D007354 4.2e-14 80.9 50 76.0
Os11g0265400 Oryza sativa ssp. japonica HOM05D006073 ORTHO05D007354 7.2e-14 80.1 52 71.2
AL3G12960 Arabidopsis lyrata HOM05D006073 ORTHO05D007354 9.4e-14 79.7 48 72.9
CDE02G4281 Ceratophyllum demersum HOM05D006073 ORTHO05D007354 1.2e-13 79.3 49 71.4
THA.LOC104820846 Tarenaya hassleriana HOM05D006073 ORTHO05D007354 1.2e-13 79.3 49 71.4
Aa31LG5G13770 Aethionema arabicum HOM05D006073 ORTHO05D007354 1.6e-13 79.0 49 71.4
Aa31LG5G13860 Aethionema arabicum HOM05D006073 ORTHO05D007354 1.6e-13 79.0 49 71.4
AT3G03330 Arabidopsis thaliana HOM05D006073 ORTHO05D007354 1.6e-13 79.0 48 72.9
Carub.0003s0250 Capsella rubella HOM05D006073 ORTHO05D007354 1.6e-13 79.0 48 72.9
CARHR077370 Cardamine hirsuta HOM05D006073 ORTHO05D007354 1.6e-13 79.0 48 72.9
Sp3g02360 Schrenkiella parvula HOM05D006073 ORTHO05D007354 3.6e-13 77.8 48 70.8
BcaC05g30280 Brassica carinata HOM05D006073 ORTHO05D007354 1.8e-12 75.5 48 70.8
A05p43850 Brassica napus HOM05D006073 ORTHO05D007354 1.8e-12 75.5 48 70.8
C05p63440 Brassica napus HOM05D006073 ORTHO05D007354 1.8e-12 75.5 48 70.8
BolC5t35008H Brassica oleracea HOM05D006073 ORTHO05D007354 1.8e-12 75.5 48 70.8
ATR0743G237 Amborella trichopoda HOM05D006073 ORTHO05D007354 4.0e-12 74.3 49 71.4
Thhalv10021121m.g Eutrema salsugineum HOM05D006073 ORTHO05D007354 4.0e-12 74.3 48 68.8
HPP92_007600 Vanilla planifolia HOM05D006073 ORTHO05D007354 4.0e-12 74.3 51 64.7
PSO832G4099 Papaver somniferum HOM05D006073 ORTHO05D007354 5.7e-11 70.5 48 66.7
Aa31LG5G13870 Aethionema arabicum HOM05D006073 ORTHO05D007354 9.8e-11 69.7 49 63.3
SEGI_30995 Sequoiadendron giganteum HOM05D006073 ORTHO05D007354 1.1e-09 66.2 49 59.2
Nitab4.5_0001449g0050 Nicotiana tabacum HOM05D006073 ORTHO05D007354 1.8e-09 65.5 52 65.4
PSO063G7544 Papaver somniferum HOM05D006073 ORTHO05D007354 1.2e-08 62.8 48 58.3
Peaxi162Scf00894g00027 Petunia axillaris HOM05D006073 ORTHO05D007354 2.9e-07 58.2 45 64.4
A05p43860 Brassica napus HOM05D006073 ORTHO05D007354 3.8e-07 57.8 45 57.8
BraA05t23123Z Brassica rapa HOM05D006073 ORTHO05D007354 3.8e-07 57.8 45 57.8
EL10Ac2g04037 Beta vulgaris HOM05D006073 ORTHO05D007354 1.5e-06 55.8 34 73.5
CBR_g30337 Chara braunii HOM05D006073 ORTHO05D007354 1.9e-06 55.5 53 47.2
BolC5t35009H Brassica oleracea HOM05D006073 ORTHO05D007354 7.2e-06 53.5 36 69.4


User provided reference genes

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