Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 2.8e-152 542.0 285 100.0
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 2.4e-87 326.2 267 64.4
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 7.1e-87 324.7 267 63.7
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 3.5e-86 322.4 267 64.0
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.5e-84 317.0 268 63.4
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 2.5e-84 316.2 268 63.4
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 2.5e-84 316.2 267 62.9
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 7.3e-84 314.7 268 61.6
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 7.3e-84 314.7 268 60.8
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 2.8e-83 312.8 268 59.0
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 1.1e-82 310.8 267 61.4
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 3.4e-81 305.8 268 60.8
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 4.4e-81 305.4 268 61.6
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 5.8e-81 305.1 269 61.7
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 9.9e-81 304.3 268 61.9
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 1.3e-80 303.9 268 60.8
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.3e-80 303.9 273 60.4
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 2.9e-80 302.8 271 61.6
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 1.1e-79 300.8 269 60.2
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 1.4e-79 300.4 269 61.3
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 2.4e-79 299.7 267 62.5
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 7.1e-79 298.1 268 60.1
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 7.1e-79 298.1 271 61.3
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 2.7e-78 296.2 267 58.4
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.7e-78 296.2 271 61.6
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 3.5e-78 295.8 268 59.0
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 3.5e-78 295.8 268 57.8
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 3.5e-78 295.8 268 61.2
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 3.5e-78 295.8 268 61.2
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 4.6e-78 295.4 268 61.2
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 6.0e-78 295.0 268 61.6
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 6.0e-78 295.0 271 60.9
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 7.8e-78 294.7 268 59.7
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 1.0e-77 294.3 268 58.2
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 1.7e-77 293.5 268 58.6
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 2.3e-77 293.1 269 59.9
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 5.1e-77 292.0 267 58.1
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 2.5e-76 289.7 268 58.6
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 4.3e-76 288.9 268 58.2
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 2.1e-75 286.6 267 58.8
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 3.6e-75 285.8 269 58.4
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 8.1e-75 284.6 268 55.6
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 2.4e-74 283.1 269 58.4
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 2.4e-74 283.1 271 56.5
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 3.1e-74 282.7 268 57.5
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 3.1e-74 282.7 268 56.7
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 4.0e-74 282.3 269 60.2
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 5.3e-74 282.0 269 57.6
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 6.9e-74 281.6 269 60.2
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 6.9e-74 281.6 267 56.9
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 6.9e-74 281.6 268 57.8
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.5e-73 280.4 268 56.0
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 2.0e-73 280.0 269 58.4
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 2.6e-73 279.6 269 59.9
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 2.6e-73 279.6 270 55.9
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 5.8e-73 278.5 268 59.3
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 7.6e-73 278.1 269 59.9
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.9e-72 276.2 268 55.2
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 3.8e-72 275.8 269 56.1
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 6.4e-72 275.0 269 57.2
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 8.4e-72 274.6 268 58.6
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 4.2e-71 272.3 269 55.0
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 7.1e-71 271.6 262 57.6
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 1.2e-70 270.8 259 56.0
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 1.6e-70 270.4 268 54.5
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 1.6e-70 270.4 268 57.8
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 2.1e-70 270.0 268 57.5
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 2.1e-70 270.0 268 57.5
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 4.6e-70 268.9 275 53.1
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 2.3e-69 266.5 268 55.2
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 3.0e-69 266.2 266 56.8
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 3.9e-69 265.8 275 52.4
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 6.6e-69 265.0 253 56.1
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 8.7e-69 264.6 269 55.8
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 8.7e-69 264.6 262 54.6
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 8.7e-69 264.6 271 56.1
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 7.3e-68 261.5 265 53.2
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 9.6e-68 261.2 265 54.0
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 1.6e-67 260.4 265 54.0
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 6.2e-67 258.5 268 54.1
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.5e-65 253.8 267 52.1
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 3.4e-65 252.7 268 52.2
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 1.4e-63 247.3 308 48.7
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 3.2e-63 246.1 265 52.8
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 4.6e-62 242.3 267 51.7
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 2.3e-61 240.0 267 50.9
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 5.1e-61 238.8 270 50.0
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 1.9e-60 236.9 270 50.4
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.5e-60 236.5 269 50.6
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 9.6e-60 234.6 268 48.9
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 3.7e-59 232.6 270 50.7
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 1.1e-58 231.1 270 47.0
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.5e-57 225.7 265 48.7
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.7e-56 223.8 265 47.9
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 7.1e-55 218.4 267 46.8
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 3.9e-53 212.6 262 49.6
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.7e-51 206.1 250 49.2
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 6.9e-50 201.8 265 44.2
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 4.5e-49 199.1 268 45.1
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.8e-42 177.2 200 52.5
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.1e-42 176.0 229 48.0
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 5.3e-42 175.6 268 42.9
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 5.3e-42 175.6 268 42.9
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 3.4e-41 172.9 179 51.4
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 2.5e-39 166.8 279 39.8
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 3.2e-39 166.4 275 38.9
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 8.8e-37 158.3 279 37.6
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 3.7e-35 152.9 284 38.4
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.4e-34 151.0 279 36.9
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 9.4e-31 138.3 354 33.6
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 4.7e-30 136.0 97 73.2
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 3.5e-25 119.8 294 32.0
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 3.8e-24 116.3 68 79.4
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 1.9e-23 114.0 68 77.9
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 2.1e-22 110.5 126 45.2
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.1e-22 109.0 205 36.1
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 2.0e-20 104.0 272 36.0
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 2.2e-16 90.5 275 30.2
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 1.5e-15 87.8 91 51.6
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 2.7e-09 67.0 119 42.9
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 3.8e-08 63.2 33 87.9
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.5e-07 61.2 31 90.3
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.5e-07 61.2 31 90.3


User provided reference genes

Program Settings