Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 5.8e-28 126.7 59 100.0
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 7.9e-17 89.7 55 76.4
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 2.5e-15 84.7 55 67.3
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 5.7e-15 83.6 56 67.9
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 5.7e-15 83.6 56 67.9
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 5.7e-15 83.6 59 69.5
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 5.7e-15 83.6 57 64.9
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 9.7e-15 82.8 56 67.9
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.3e-14 82.4 56 66.1
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 2.2e-14 81.6 59 67.8
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 2.2e-14 81.6 59 67.8
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 3.7e-14 80.9 58 65.5
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 8.2e-14 79.7 56 64.3
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 8.2e-14 79.7 56 62.5
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 1.1e-13 79.3 56 64.3
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.4e-13 79.0 46 78.3
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.4e-13 79.0 59 62.7
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.4e-13 78.2 45 77.8
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 3.1e-13 77.8 45 77.8
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 4.1e-13 77.4 56 64.3
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 4.1e-13 77.4 46 73.9
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 5.3e-13 77.0 55 63.6
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 5.3e-13 77.0 55 63.6
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 5.3e-13 77.0 57 64.9
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 6.9e-13 76.6 48 72.9
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 9.1e-13 76.3 56 60.7
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.2e-12 75.9 52 67.3
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 2.0e-12 75.1 58 63.8
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 2.0e-12 75.1 56 60.7
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.6e-12 74.7 54 64.8
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 2.6e-12 74.7 53 69.8
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.6e-12 74.7 46 69.6
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 4.5e-12 73.9 46 73.9
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 4.5e-12 73.9 58 63.8
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 5.9e-12 73.6 56 57.1
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 5.9e-12 73.6 53 67.9
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 5.9e-12 73.6 49 67.3
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 7.7e-12 73.2 58 63.8
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.3e-11 72.4 58 63.8
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.3e-11 72.4 56 60.7
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.7e-11 72.0 58 63.8
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 1.7e-11 72.0 45 71.1
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.2e-11 71.6 50 66.0
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.2e-11 71.6 57 57.9
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 2.2e-11 71.6 57 61.4
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.8e-11 70.9 56 58.9
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 6.5e-11 70.1 54 64.8
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 8.5e-11 69.7 54 66.7
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.1e-10 69.3 50 62.0
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.1e-10 69.3 50 64.0
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.1e-10 69.3 50 62.0
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 1.4e-10 68.9 48 62.5
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 1.9e-10 68.6 57 61.4
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 2.5e-10 68.2 46 65.2
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 3.2e-10 67.8 53 62.3
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.2e-10 67.8 46 65.2
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 3.2e-10 67.8 57 57.9
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 3.2e-10 67.8 49 63.3
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 4.2e-10 67.4 45 71.1
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 5.5e-10 67.0 53 64.2
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 7.2e-10 66.6 54 61.1
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 7.2e-10 66.6 54 63.0
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 9.4e-10 66.2 58 58.6
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 9.4e-10 66.2 57 54.4
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 9.4e-10 66.2 57 61.4
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 1.2e-09 65.9 57 57.9
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 1.2e-09 65.9 50 58.0
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.2e-09 65.9 45 68.9
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 2.1e-09 65.1 59 55.9
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 2.1e-09 65.1 57 52.6
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 2.7e-09 64.7 48 58.3
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 3.6e-09 64.3 57 56.1
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 3.6e-09 64.3 59 55.9
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 4.7e-09 63.9 45 62.2
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 6.1e-09 63.5 58 55.2
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.4e-08 62.4 57 54.4
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.4e-08 62.4 57 54.4
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 1.4e-08 62.4 45 62.2
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 1.8e-08 62.0 45 66.7
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.0e-08 61.2 57 52.6
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 3.9e-08 60.8 43 62.8
MBI14_g10145_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 2.6e-07 58.2 56 48.2
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.6e-07 58.2 49 57.1
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 3.3e-07 57.8 49 57.1
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 5.7e-07 57.0 48 47.9
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 9.7e-07 56.2 56 50.0
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 1.7e-06 55.5 45 55.6
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.7e-06 55.5 49 53.1
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 2.2e-06 55.1 49 51.0
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 2.2e-06 55.1 45 55.6
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 3.7e-06 54.3 47 57.4
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 4.8e-06 53.9 56 53.6
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 6.3e-06 53.5 44 52.3
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 6.3e-06 53.5 44 52.3
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 6.3e-06 53.5 44 52.3
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 6.3e-06 53.5 56 53.6
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 8.2e-06 53.1 44 59.1
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 8.2e-06 53.1 40 55.0
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 8.2e-06 53.1 45 51.1


User provided reference genes

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