Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c38250 Carica papaya HOM05D002996 ORTHO05D003536 1.2e-36 156.0 77 100.0
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 1.9e-31 138.7 75 89.3
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 4.3e-31 137.5 77 87.0
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 5.6e-31 137.1 74 86.5
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 1.6e-30 135.6 77 84.4
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 2.1e-30 135.2 77 84.4
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 6.2e-30 133.7 77 83.1
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.1e-29 132.9 77 83.1
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 1.4e-29 132.5 77 85.7
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 1.4e-29 132.5 77 84.4
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.4e-29 132.5 77 81.8
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.8e-29 132.1 77 85.7
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.8e-29 132.1 77 85.7
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 3.1e-29 131.3 77 80.5
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 3.1e-29 131.3 77 81.8
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 6.9e-29 130.2 77 81.8
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 6.9e-29 130.2 77 81.8
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 6.9e-29 130.2 77 81.8
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 9.0e-29 129.8 77 80.5
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 1.2e-28 129.4 77 81.8
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 1.5e-28 129.0 77 80.5
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 2.0e-28 128.6 77 83.1
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 2.0e-28 128.6 77 81.8
Actinidia17659 Actinidia chinensis HOM05D002996 ORTHO05D003536 3.4e-28 127.9 77 80.5
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 3.4e-28 127.9 77 81.8
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 7.6e-28 126.7 77 77.9
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 7.6e-28 126.7 75 82.7
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 7.6e-28 126.7 76 78.9
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 7.6e-28 126.7 77 80.5
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 1.0e-27 126.3 77 79.2
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 1.3e-27 125.9 73 83.6
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 1.7e-27 125.6 75 80.0
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 1.7e-27 125.6 74 85.1
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 1.7e-27 125.6 77 77.9
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 2.2e-27 125.2 77 77.9
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.2e-27 125.2 77 81.8
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.2e-27 125.2 77 81.8
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 2.2e-27 125.2 77 81.8
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 2.2e-27 125.2 77 76.6
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 2.2e-27 125.2 77 76.6
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 2.2e-27 125.2 77 79.2
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 2.9e-27 124.8 77 77.9
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 2.9e-27 124.8 74 81.1
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 2.9e-27 124.8 77 77.9
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.9e-27 124.8 77 77.9
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 3.8e-27 124.4 76 77.6
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 3.8e-27 124.4 77 77.9
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 3.8e-27 124.4 76 77.6
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 4.9e-27 124.0 74 81.1
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 6.5e-27 123.6 75 81.3
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 6.5e-27 123.6 77 77.9
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 6.5e-27 123.6 75 78.7
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 6.5e-27 123.6 74 78.4
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 8.4e-27 123.2 77 77.9
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 8.4e-27 123.2 75 82.7
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 1.1e-26 122.9 77 79.2
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.1e-26 122.9 77 72.7
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 1.1e-26 122.9 77 72.7
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 1.4e-26 122.5 77 74.0
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.4e-26 122.5 75 78.7
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.4e-26 122.5 74 79.7
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 1.4e-26 122.5 77 79.2
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 1.9e-26 122.1 78 80.8
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 1.9e-26 122.1 77 77.9
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 1.9e-26 122.1 77 76.6
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 1.9e-26 122.1 71 78.9
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 1.9e-26 122.1 77 74.0
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 2.5e-26 121.7 77 75.3
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 2.5e-26 121.7 74 79.7
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 2.5e-26 121.7 77 76.6
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 4.2e-26 120.9 75 76.0
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 4.2e-26 120.9 77 75.3
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 4.2e-26 120.9 77 75.3
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 4.2e-26 120.9 74 79.7
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 5.5e-26 120.6 74 79.7
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 5.5e-26 120.6 71 81.7
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 5.5e-26 120.6 77 76.6
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 7.1e-26 120.2 77 75.3
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 7.1e-26 120.2 75 77.3
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 9.3e-26 119.8 77 74.0
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 9.3e-26 119.8 75 77.3
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.2e-25 119.4 77 74.0
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 1.6e-25 119.0 75 80.0
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 1.6e-25 119.0 75 80.0
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 1.6e-25 119.0 75 80.0
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 1.6e-25 119.0 75 76.0
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.1e-25 118.6 77 75.3
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 2.1e-25 118.6 74 77.0
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 2.1e-25 118.6 77 72.7
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 2.1e-25 118.6 77 72.7
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 2.7e-25 118.2 75 80.0
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 2.7e-25 118.2 75 77.3
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 2.7e-25 118.2 75 77.3
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 2.7e-25 118.2 77 75.3
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 2.7e-25 118.2 74 78.4
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 2.7e-25 118.2 73 76.7
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 2.7e-25 118.2 75 73.3
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 3.5e-25 117.9 77 72.7
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 4.6e-25 117.5 75 80.0
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 4.6e-25 117.5 75 80.0
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 4.6e-25 117.5 75 78.7
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 6.0e-25 117.1 75 78.7
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 6.0e-25 117.1 75 78.7
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 6.0e-25 117.1 77 72.7
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 6.0e-25 117.1 77 77.9
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 7.9e-25 116.7 75 76.0
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 7.9e-25 116.7 75 76.0
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 7.9e-25 116.7 74 75.7
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 7.9e-25 116.7 77 76.6
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 1.0e-24 116.3 75 76.0
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 1.0e-24 116.3 75 76.0
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 1.0e-24 116.3 77 72.7
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.0e-24 116.3 77 71.4
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 1.0e-24 116.3 74 75.7
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 1.3e-24 115.9 74 79.7
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 1.8e-24 115.5 75 78.7
Lj2C435G10 Lonicera japonica HOM05D002996 ORTHO05D003536 1.8e-24 115.5 101 60.4
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 1.8e-24 115.5 77 71.4
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.8e-24 115.5 75 77.3
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 1.8e-24 115.5 75 77.3
TPR.G1005 Trifolium pratense HOM05D002996 ORTHO05D003536 1.8e-24 115.5 77 71.4
vmacro05507 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.8e-24 115.5 77 70.1
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 2.3e-24 115.2 75 77.3
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 2.3e-24 115.2 74 77.0
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 3.0e-24 114.8 74 74.3
Nitab4.5_0000465g0030 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.0e-24 114.8 77 70.1
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 3.9e-24 114.4 75 77.3
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 6.7e-24 113.6 77 70.1
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 1.5e-23 112.5 77 75.3
SEGI_13560 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 1.5e-23 112.5 74 74.3
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 1.9e-23 112.1 77 70.1
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 1.9e-23 112.1 73 76.7
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 2.5e-23 111.7 74 74.3
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 3.3e-23 111.3 74 71.6
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 7.4e-23 110.2 70 75.7
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 2.8e-22 108.2 75 70.7
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.1e-21 106.3 74 73.0
MBI16_g14303_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 4.5e-20 100.9 58 84.5
CsaV3_1G027790 Cucumis sativus L. HOM05D002996 ORTHO05D003536 1.6e-17 92.4 58 72.4
Lsat_1_v5_gn_2_24061 Lactuca sativa HOM05D002996 ORTHO05D003536 2.5e-15 85.1 68 61.8
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.1e-13 79.7 65 50.8
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 2.0e-12 75.5 41 85.4
COL.COLO4_15722 Corchorus olitorius HOM05D002996 ORTHO05D003536 3.4e-12 74.7 42 85.7
COL.COLO4_19895 Corchorus olitorius HOM05D002996 ORTHO05D003536 3.4e-12 74.7 42 85.7
DCAR_010737 Daucus carota HOM05D002996 ORTHO05D003536 5.0e-11 70.9 74 58.1
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 1.9e-10 68.9 77 51.9
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 4.2e-10 67.8 65 50.8
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 7.2e-10 67.0 66 56.1
Hma1.2p1_0969F.1_g242550 Hydrangea macrophylla HOM05D002996 ORTHO05D003536 3.6e-09 64.7 40 77.5
vmacro18006 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.6e-09 64.7 33 90.9


User provided reference genes

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