Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c37635 Carica papaya HOM05D006760 ORTHO05D008121 4.1e-125 451.4 232 100.0
Potri.001G130100 Populus trichocarpa HOM05D006760 ORTHO05D008121 2.1e-73 279.6 248 64.5
Atru.chr6.2107 Acer truncatum HOM05D006760 ORTHO05D008121 2.3e-72 276.2 232 65.5
Manes.15G182500 Manihot esculenta HOM05D006760 ORTHO05D008121 4.9e-70 268.5 246 63.4
Ciclev10001352m.g Citrus clementina HOM05D006760 ORTHO05D008121 2.1e-68 263.1 245 63.3
Duzib205G0742 Durio zibethinus HOM05D006760 ORTHO05D008121 6.0e-68 261.5 234 63.7
Dinv37413 Davidia involucrata HOM05D006760 ORTHO05D008121 1.3e-67 260.4 235 61.7
Sabra01G0100600 Salix brachista HOM05D006760 ORTHO05D008121 1.3e-67 260.4 256 60.5
CSS0041869 Camellia sinensis var. sinensis HOM05D006760 ORTHO05D008121 8.6e-67 257.7 257 58.4
Thecc.03G324900 Theobroma cacao HOM05D006760 ORTHO05D008121 3.6e-65 252.3 233 61.8
CSS0002453 Camellia sinensis var. sinensis HOM05D006760 ORTHO05D008121 4.7e-65 251.9 259 56.8
Cfa012614 Carpinus fangiana HOM05D006760 ORTHO05D008121 4.0e-64 248.8 232 62.1
Oeu046799.1 Olea europaea HOM05D006760 ORTHO05D008121 3.4e-63 245.7 267 54.7
RcHm_v2.0_Chr7g0213631 Rosa chinensis HOM05D006760 ORTHO05D008121 5.8e-63 245.0 235 61.3
CANSAT21G1082 Cannabis sativa HOM05D006760 ORTHO05D008121 1.3e-62 243.8 232 60.8
CiPaw.11G103800 Carya illinoinensis HOM05D006760 ORTHO05D008121 2.2e-62 243.0 235 61.7
Dinv41816 Davidia involucrata HOM05D006760 ORTHO05D008121 3.8e-62 242.3 244 57.0
Hma1.2p1_1873F.1_g306180 Hydrangea macrophylla HOM05D006760 ORTHO05D008121 3.8e-62 242.3 253 58.5
Cc00_g07450 Coffea canephora HOM05D006760 ORTHO05D008121 6.4e-62 241.5 255 58.0
Gohir.D12G202700 Gossypium hirsutum HOM05D006760 ORTHO05D008121 6.4e-62 241.5 235 58.7
FAN13G0245 Fragaria x ananassa HOM05D006760 ORTHO05D008121 1.1e-61 240.7 232 61.6
Gohir.A12G200000 Gossypium hirsutum HOM05D006760 ORTHO05D008121 1.1e-61 240.7 234 59.8
Gorai.008G217700 Gossypium raimondii HOM05D006760 ORTHO05D008121 1.1e-61 240.7 235 58.7
Migut.E01355 Erythranthe guttata HOM05D006760 ORTHO05D008121 1.4e-61 240.4 243 56.8
FAN18G0636 Fragaria x ananassa HOM05D006760 ORTHO05D008121 1.4e-61 240.4 232 61.6
TAR629G0494 Trochodendron aralioides HOM05D006760 ORTHO05D008121 1.4e-61 240.4 279 52.7
DCAR_006312 Daucus carota HOM05D006760 ORTHO05D008121 2.4e-61 239.6 247 57.1
Prupe.5G019400 Prunus persica HOM05D006760 ORTHO05D008121 3.2e-61 239.2 232 61.2
FvH4_5g24100 Fragaria vesca HOM05D006760 ORTHO05D008121 4.1e-61 238.8 232 61.2
FAN18G2939 Fragaria x ananassa HOM05D006760 ORTHO05D008121 7.1e-61 238.0 232 61.2
SGA_v2.0_scaffold111G31361 Striga asiatica HOM05D006760 ORTHO05D008121 9.2e-61 237.7 231 59.7
SalBow8G1564 Salvia bowleyana HOM05D006760 ORTHO05D008121 1.2e-60 237.3 242 57.0
COL.COLO4_37233 Corchorus olitorius HOM05D006760 ORTHO05D008121 2.1e-60 236.5 240 59.6
Peaxi162Scf00193g00023 Petunia axillaris HOM05D006760 ORTHO05D008121 2.1e-60 236.5 243 55.6
TWI12G1140 Tripterygium wilfordii HOM05D006760 ORTHO05D008121 3.5e-60 235.7 243 60.1
MSTRG.13908 Avicennia marina HOM05D006760 ORTHO05D008121 6.0e-60 235.0 244 54.9
FAN04G2385 Fragaria x ananassa HOM05D006760 ORTHO05D008121 7.8e-60 234.6 240 57.9
Actinidia32779 Actinidia chinensis HOM05D006760 ORTHO05D008121 1.0e-59 234.2 257 54.9
CiPaw.12G072300 Carya illinoinensis HOM05D006760 ORTHO05D008121 2.5e-58 229.6 232 57.8
MD06G1017100 Malus domestica HOM05D006760 ORTHO05D008121 3.3e-58 229.2 233 58.4
HanXRQChr06g0173431 Helianthus annuus HOM05D006760 ORTHO05D008121 4.3e-58 228.8 235 56.2
Lj8C333T3 Lonicera japonica HOM05D006760 ORTHO05D008121 7.3e-58 228.0 243 55.6
Glyma.04G123100 Glycine max HOM05D006760 ORTHO05D008121 1.2e-57 227.3 253 55.3
VMungo1215G0713 Vigna mungo HOM05D006760 ORTHO05D008121 2.8e-57 226.1 247 54.7
Glyma.09G214700 Glycine max HOM05D006760 ORTHO05D008121 3.6e-57 225.7 254 53.9
Solyc08g075680.4 Solanum lycopersicum HOM05D006760 ORTHO05D008121 3.6e-57 225.7 256 53.1
PGSC0003DMG400030849 Solanum tuberosum HOM05D006760 ORTHO05D008121 3.6e-57 225.7 256 53.1
Actinidia01259 Actinidia chinensis HOM05D006760 ORTHO05D008121 4.7e-57 225.3 263 53.6
Sc22g0002140 Simmondsia chinensis HOM05D006760 ORTHO05D008121 4.7e-57 225.3 235 56.2
Sopen08g024330 Solanum pennellii HOM05D006760 ORTHO05D008121 4.7e-57 225.3 256 53.1
MSTRG.11878 Avicennia marina HOM05D006760 ORTHO05D008121 6.2e-57 224.9 243 54.3
MSTRG.1766 Avicennia marina HOM05D006760 ORTHO05D008121 8.1e-57 224.6 244 53.3
CAN.G800.11 Capsicum annuum HOM05D006760 ORTHO05D008121 8.1e-57 224.6 253 53.0
Haze_08051 Corylus avellana HOM05D006760 ORTHO05D008121 1.4e-56 223.8 232 58.6
Lsat_1_v5_gn_3_23361 Lactuca sativa HOM05D006760 ORTHO05D008121 1.4e-56 223.8 267 52.8
Nitab4.5_0001023g0160 Nicotiana tabacum HOM05D006760 ORTHO05D008121 1.4e-56 223.8 257 53.3
Nitab4.5_0000030g0230 Nicotiana tabacum HOM05D006760 ORTHO05D008121 2.4e-56 223.0 257 53.3
Haze_08041 Corylus avellana HOM05D006760 ORTHO05D008121 4.0e-56 222.2 232 58.2
TPR.G17264 Trifolium pratense HOM05D006760 ORTHO05D008121 4.0e-56 222.2 253 51.8
Eucgr.D02586 Eucalyptus grandis HOM05D006760 ORTHO05D008121 6.9e-56 221.5 245 54.3
Psat2g143640 Pisum sativum HOM05D006760 ORTHO05D008121 2.0e-55 219.9 270 49.3
Medtr5g026680 Medicago truncatula HOM05D006760 ORTHO05D008121 2.6e-55 219.5 236 54.7
Phvul.002G127600 Phaseolus vulgaris HOM05D006760 ORTHO05D008121 7.6e-55 218.0 250 53.6
Ca_30394_v3 Cicer arietinum L. HOM05D006760 ORTHO05D008121 9.9e-55 217.6 259 51.0
THA.LOC104798519 Tarenaya hassleriana HOM05D006760 ORTHO05D008121 1.7e-54 216.9 238 56.7
Lj2g0001135 Lotus japonicus HOM05D006760 ORTHO05D008121 8.4e-54 214.5 259 51.7
AUR62007417 Chenopodium quinoa HOM05D006760 ORTHO05D008121 2.4e-53 213.0 248 52.4
Lalb_Chr05g0229401 Lupinus albus HOM05D006760 ORTHO05D008121 2.4e-53 213.0 232 53.0
Aa31LG9G15690 Aethionema arabicum HOM05D006760 ORTHO05D008121 1.6e-52 210.3 238 56.3
ECA246G2456 Erigeron canadensis HOM05D006760 ORTHO05D008121 4.6e-52 208.8 262 50.0
Hund11097 Selenicereus undatus HOM05D006760 ORTHO05D008121 1.0e-51 207.6 236 53.4
arahy.Tifrunner.gnm1.ann1.WT3CQ0 Arachis hypogaea HOM05D006760 ORTHO05D008121 2.3e-51 206.5 277 46.9
arahy.Tifrunner.gnm1.ann1.Z5DNFJ Arachis hypogaea HOM05D006760 ORTHO05D008121 2.3e-51 206.5 277 46.9
Aqoxy3G00108 Aquilegia oxysepala HOM05D006760 ORTHO05D008121 5.1e-51 205.3 308 45.1
Nn1g02052 Nelumbo nucifera HOM05D006760 ORTHO05D008121 8.7e-51 204.5 279 48.0
PSO782G3372 Papaver somniferum HOM05D006760 ORTHO05D008121 3.3e-50 202.6 278 46.0
PGR067G0006 Punica granatum HOM05D006760 ORTHO05D008121 7.3e-50 201.4 253 52.2
CARHR154260 Cardamine hirsuta HOM05D006760 ORTHO05D008121 2.8e-49 199.5 233 54.9
HanXRQChr17g0537101 Helianthus annuus HOM05D006760 ORTHO05D008121 2.8e-49 199.5 235 51.9
PSO063G6156 Papaver somniferum HOM05D006760 ORTHO05D008121 6.2e-49 198.4 282 45.0
Rhsim11G0034300 Rhododendron simsii HOM05D006760 ORTHO05D008121 8.1e-49 198.0 291 43.0
AUR62027315 Chenopodium quinoa HOM05D006760 ORTHO05D008121 1.4e-48 197.2 240 49.6
PGR031G0562 Punica granatum HOM05D006760 ORTHO05D008121 6.9e-48 194.9 246 51.2
Thhalv10002556m.g Eutrema salsugineum HOM05D006760 ORTHO05D008121 2.9e-46 189.5 238 52.5
Ah.12g056060 Amaranthus hybridus HOM05D006760 ORTHO05D008121 3.8e-46 189.1 240 48.8
unitig_699.g19677 Utricularia gibba HOM05D006760 ORTHO05D008121 1.1e-45 187.6 235 49.4
EL10Ac5g11912 Beta vulgaris HOM05D006760 ORTHO05D008121 9.3e-45 184.5 271 44.6
Ca_25094_v3 Cicer arietinum L. HOM05D006760 ORTHO05D008121 4.6e-44 182.2 238 48.7
AT3G45900 Arabidopsis thaliana HOM05D006760 ORTHO05D008121 6.0e-44 181.8 235 51.9
BcaB01g01049 Brassica carinata HOM05D006760 ORTHO05D008121 6.0e-44 181.8 234 52.1
AL5G24580 Arabidopsis lyrata HOM05D006760 ORTHO05D008121 3.0e-43 179.5 234 50.9
Carub.0005s1175 Capsella rubella HOM05D006760 ORTHO05D008121 8.7e-43 177.9 240 49.6
unitig_52.g17262 Utricularia gibba HOM05D006760 ORTHO05D008121 1.5e-42 177.2 233 45.5
vmacro00052 Vaccinium macrocarpon HOM05D006760 ORTHO05D008121 3.3e-42 176.0 264 43.9
Sp5g15640 Schrenkiella parvula HOM05D006760 ORTHO05D008121 7.4e-42 174.9 234 50.4
Lalb_Chr16g0380681 Lupinus albus HOM05D006760 ORTHO05D008121 4.8e-41 172.2 237 46.8
CDE11G0454 Ceratophyllum demersum HOM05D006760 ORTHO05D008121 5.8e-39 165.2 232 44.0
A06p21180 Brassica napus HOM05D006760 ORTHO05D008121 6.4e-38 161.8 234 48.7
GSVIVG01022805001 Vitis vinifera HOM05D006760 ORTHO05D008121 2.4e-37 159.8 102 77.5
BraA06t25205Z Brassica rapa HOM05D006760 ORTHO05D008121 7.1e-37 158.3 234 47.4
Zm00001eb064790 Zea mays HOM05D006760 ORTHO05D008121 3.0e-35 152.9 270 39.3
Os03g0853600 Oryza sativa ssp. japonica HOM05D006760 ORTHO05D008121 1.9e-34 150.2 265 36.2
Rhsim03G0260800 Rhododendron simsii HOM05D006760 ORTHO05D008121 2.5e-34 149.8 108 67.6
BcaC01g01943 Brassica carinata HOM05D006760 ORTHO05D008121 1.6e-33 147.1 238 44.5
BolC3t19291H Brassica oleracea HOM05D006760 ORTHO05D008121 1.6e-33 147.1 238 44.5
C03p70350 Brassica napus HOM05D006760 ORTHO05D008121 6.2e-33 145.2 234 44.0
HPP92_015129 Vanilla planifolia HOM05D006760 ORTHO05D008121 1.1e-26 124.4 108 60.2
ATR0829G077 Amborella trichopoda HOM05D006760 ORTHO05D008121 4.1e-24 115.9 98 57.1
MD00G1002200 Malus domestica HOM05D006760 ORTHO05D008121 2.0e-23 113.6 71 78.9
C01p33630 Brassica napus HOM05D006760 ORTHO05D008121 1.0e-19 101.3 83 65.1
CDE02G3415 Ceratophyllum demersum HOM05D006760 ORTHO05D008121 3.3e-18 96.3 83 62.7
HPP92_015128 Vanilla planifolia HOM05D006760 ORTHO05D008121 5.3e-16 89.0 111 49.5
Rhsim02G0038400 Rhododendron simsii HOM05D006760 ORTHO05D008121 3.4e-15 86.3 120 44.2
Rhsim02G0039000 Rhododendron simsii HOM05D006760 ORTHO05D008121 4.5e-15 85.9 119 44.5
CSS0020490 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 8.5e-14 81.6 101 50.5
Ciclev10018919m.g Citrus clementina HOM05D005525 ORTHO05D006341 2.4e-08 63.5 78 46.2
Duzib205G1243 Durio zibethinus HOM05D005525 ORTHO05D006341 7.0e-08 62.0 79 43.0
Duzib068G0374 Durio zibethinus HOM05D005525 ORTHO05D006341 2.0e-07 60.5 79 41.8
Gohir.D03G115100 Gossypium hirsutum HOM05D005525 ORTHO05D006341 2.0e-07 60.5 80 45.0
Gorai.003G121400 Gossypium raimondii HOM05D005525 ORTHO05D006341 2.0e-07 60.5 80 45.0
SEGI_12943 Sequoiadendron giganteum HOM05D005525 ORTHO05D008121 2.6e-07 60.1 110 37.3
Gohir.A03G052000 Gossypium hirsutum HOM05D005525 ORTHO05D006341 3.4e-07 59.7 80 45.0
COL.COLO4_16772 Corchorus olitorius HOM05D005525 ORTHO05D006341 4.5e-07 59.3 80 40.0
arahy.Tifrunner.gnm1.ann1.9S9EKZ Arachis hypogaea HOM05D005525 ORTHO05D006341 5.9e-07 58.9 142 31.0
CARHR266030 Cardamine hirsuta HOM05D005525 ORTHO05D006341 5.9e-07 58.9 244 27.9
CDE10G1205 Ceratophyllum demersum HOM05D005525 ORTHO05D006341 5.9e-07 58.9 120 35.0
Hma1.2p1_0404F.1_g145280 Hydrangea macrophylla HOM05D005525 ORTHO05D006341 1.3e-06 57.8 79 44.3
Hma1.2p1_1587F.1_g292280 Hydrangea macrophylla HOM05D005525 ORTHO05D006341 1.3e-06 57.8 79 44.3
Lalb_Chr08g0240181 Lupinus albus HOM05D005525 ORTHO05D006341 1.3e-06 57.8 82 40.2
Rhsim09G0206200 Rhododendron simsii HOM05D005525 ORTHO05D006341 1.3e-06 57.8 79 45.6
Manes.02G143500 Manihot esculenta HOM05D005525 ORTHO05D006341 1.7e-06 57.4 81 43.2
Thecc.03G200300 Theobroma cacao HOM05D005525 ORTHO05D006341 1.7e-06 57.4 79 39.2
FvH4_7g31370 Fragaria vesca HOM05D005525 ORTHO05D006341 2.2e-06 57.0 81 43.2
FAN03G1856 Fragaria x ananassa HOM05D005525 ORTHO05D006341 2.2e-06 57.0 81 43.2
Sabra12G0015700 Salix brachista HOM05D005525 ORTHO05D006341 2.2e-06 57.0 249 29.3
Dinv29269 Davidia involucrata HOM05D005525 ORTHO05D006341 2.9e-06 56.6 80 42.5
FAN01G0744 Fragaria x ananassa HOM05D005525 ORTHO05D006341 2.9e-06 56.6 81 43.2
arahy.Tifrunner.gnm1.ann1.SHH15X Arachis hypogaea HOM05D005525 ORTHO05D006341 3.8e-06 56.2 143 31.5
Gohir.A12G249300 Gossypium hirsutum HOM05D005525 ORTHO05D006341 3.8e-06 56.2 77 45.5
Gorai.008G268200 Gossypium raimondii HOM05D005525 ORTHO05D006341 3.8e-06 56.2 77 45.5
EL10Ac3g05265 Beta vulgaris HOM05D005525 ORTHO05D006341 5.0e-06 55.8 69 47.8
Lj3A903T39 Lonicera japonica HOM05D005525 ORTHO05D006341 5.0e-06 55.8 83 37.3
SEGI_37005 Sequoiadendron giganteum HOM05D005525 ORTHO05D006341 5.0e-06 55.8 97 35.1
MSTRG.8648 Avicennia marina HOM05D005525 ORTHO05D006341 6.5e-06 55.5 82 39.0
THA.LOC104799969 Tarenaya hassleriana HOM05D005525 ORTHO05D006341 6.5e-06 55.5 97 36.1
vmacro10127 Vaccinium macrocarpon HOM05D005525 ORTHO05D006341 6.5e-06 55.5 79 44.3
GSVIVG01038560001 Vitis vinifera HOM05D005525 ORTHO05D006341 6.5e-06 55.5 83 41.0
TAR636G1140 Trochodendron aralioides HOM05D005525 ORTHO05D006341 8.5e-06 55.1 98 37.8


User provided reference genes

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