Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c37080 Carica papaya HOM05D015597 ORTHO05D020338 2.5e-71 271.9 131 100.0
Cpa.g.sc902.1 Carica papaya HOM05D015597 ORTHO05D020338 4.1e-13 78.6 66 51.5
Cpa.g.sc13.251 Carica papaya HOM05D015597 ORTHO05D020338 4.2e-10 68.6 66 45.5
Cpa.g.sc217.6 Carica papaya HOM05D000003 ORTHO05D000004 5.5e-10 68.2 63 50.8
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 9.3e-10 67.4 69 44.9
Nn1g09365 Nelumbo nucifera HOM05D000003 ORTHO05D000004 2.7e-09 65.9 74 43.2
Nn1g02030 Nelumbo nucifera HOM05D000003 ORTHO05D004093 7.9e-09 64.3 76 39.5
Nn4g22089 Nelumbo nucifera HOM05D000003 ORTHO05D000004 7.9e-09 64.3 74 40.5
vmacro00928 Vaccinium macrocarpon HOM05D000042 ORTHO05D008481 7.9e-09 64.3 64 42.2
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 1.0e-08 63.9 85 37.6
FvH4_4g08194 Fragaria vesca HOM05D000003 ORTHO05D000004 1.3e-08 63.5 73 38.4
FvH4_6g52701 Fragaria vesca HOM05D000003 ORTHO05D006737 1.3e-08 63.5 65 44.6
QL01p036379 Quercus lobata HOM05D000003 ORTHO05D000004 1.3e-08 63.5 68 41.2
CANSAT25G2587 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-08 63.2 74 37.8
Cpa.g.sc28.69 Carica papaya HOM05D000003 ORTHO05D020338 1.8e-08 63.2 48 56.2
Lj2g0021852 Lotus japonicus HOM05D000003 ORTHO05D000126 1.8e-08 63.2 76 38.2
Lj3g0018085 Lotus japonicus HOM05D000003 ORTHO05D046627 1.8e-08 63.2 76 38.2
Lj5g0009119 Lotus japonicus HOM05D000003 ORTHO05D000004 2.3e-08 62.8 76 36.8
QL05p056014 Quercus lobata HOM05D000003 ORTHO05D018096 2.3e-08 62.8 68 44.1
Manes.15G185801 Manihot esculenta HOM05D000003 ORTHO05D000167 3.9e-08 62.0 62 46.8
Cpa.g.sc55.165 Carica papaya HOM05D000003 ORTHO05D020338 5.1e-08 61.6 52 50.0
Potri.002G000350 Populus trichocarpa HOM05D000003 ORTHO05D000006 5.1e-08 61.6 66 43.9
CANSAT80G0272 Cannabis sativa HOM05D000003 ORTHO05D000004 8.7e-08 60.8 74 37.8
Lj5g0003062 Lotus japonicus HOM05D000003 ORTHO05D000004 8.7e-08 60.8 76 36.8
QL10p036891 Quercus lobata HOM05D000003 ORTHO05D000004 8.7e-08 60.8 82 39.0
RhsimUnG0010200 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.7e-08 60.8 85 38.8
Thecc.04G005800 Theobroma cacao HOM05D000003 ORTHO05D000004 8.7e-08 60.8 64 40.6
CANSAT01G1250 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-07 60.5 69 37.7
CANSAT35G1728 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.5 73 35.6
Manes.05G121901 Manihot esculenta HOM05D000003 ORTHO05D000004 1.1e-07 60.5 84 35.7
Rhsim05G0208700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.1e-07 60.5 84 34.5
CANSAT21G1372 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-07 60.1 59 42.4
CANSAT56G1552 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-07 60.1 60 41.7
Cpa.g.c32211 Carica papaya HOM05D000003 ORTHO05D016898 1.5e-07 60.1 48 50.0
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 1.5e-07 60.1 65 43.1
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-07 60.1 67 37.3
CANSAT01G2035 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-07 59.7 68 33.8
Manes.12G101201 Manihot esculenta HOM05D000003 ORTHO05D000004 1.9e-07 59.7 62 46.8
Nn6g35689 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.9e-07 59.7 78 37.2
QL05p025219 Quercus lobata HOM05D000003 ORTHO05D000004 1.9e-07 59.7 63 38.1
Rhsim13G0170800 Rhododendron simsii HOM05D000101 ORTHO05D000089 1.9e-07 59.7 64 40.6
CANSAT09G0003 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-07 59.3 69 33.3
CANSAT56G4250 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-07 59.3 70 41.4
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-07 59.3 69 37.7
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.5e-07 59.3 64 39.1
Manes.10G125312 Manihot esculenta HOM05D000003 ORTHO05D000167 2.5e-07 59.3 51 51.0
EL10Ac8g19094 Beta vulgaris HOM05D000003 ORTHO05D000004 3.3e-07 58.9 62 46.8
CiPaw.07G081700 Carya illinoinensis HOM05D000003 ORTHO05D000004 3.3e-07 58.9 60 40.0
CiPaw.10G104100 Carya illinoinensis HOM05D000003 ORTHO05D000167 3.3e-07 58.9 64 43.8
Rhsim05G0209000 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.3e-07 58.5 80 35.0
Rhsim11G0064100 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.3e-07 58.5 80 35.0
Potri.001G266504 Populus trichocarpa HOM05D000003 ORTHO05D000004 5.7e-07 58.2 66 42.4
QL04p012310 Quercus lobata HOM05D000009 ORTHO05D000008 5.7e-07 58.2 81 35.8
Rhsim08G0124600 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.7e-07 58.2 87 32.2
Atru.chr3.1768 Acer truncatum HOM05D000003 ORTHO05D000167 7.4e-07 57.8 67 38.8
Actinidia37616 Actinidia chinensis HOM05D000001 ORTHO05D006025 7.4e-07 57.8 77 36.4
CANSAT56G0354 Cannabis sativa HOM05D000003 ORTHO05D000167 7.4e-07 57.8 52 46.2
CANSAT78G1434 Cannabis sativa HOM05D000003 ORTHO05D000004 7.4e-07 57.8 71 38.0
CiPaw.06G023000 Carya illinoinensis HOM05D000003 ORTHO05D000004 7.4e-07 57.8 60 45.0
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 7.4e-07 57.8 90 36.7
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 7.4e-07 57.8 69 39.1
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 7.4e-07 57.8 82 31.7
Manes.10G106150 Manihot esculenta HOM05D000003 ORTHO05D000004 7.4e-07 57.8 76 39.5
Rhsim11G0146500 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.4e-07 57.8 59 40.7
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 9.7e-07 57.4 62 41.9
Psat2g123360 Pisum sativum HOM05D000003 ORTHO05D000004 9.7e-07 57.4 64 39.1
QL02p036374 Quercus lobata HOM05D000003 ORTHO05D000004 9.7e-07 57.4 68 36.8
QL04p082656 Quercus lobata HOM05D000003 ORTHO05D000167 9.7e-07 57.4 95 31.6
CiPaw.15G073500 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.3e-06 57.0 62 38.7
QL03p040865 Quercus lobata HOM05D000003 ORTHO05D000004 1.3e-06 57.0 63 46.0
QL10p031903 Quercus lobata HOM05D000003 ORTHO05D000004 1.3e-06 57.0 63 41.3
SGA_v2.0_scaffold242G44251 Striga asiatica HOM05D023911 ORTHO05D000004 1.3e-06 57.0 66 42.4
Atru.chr2.931 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 56.6 62 43.5
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.6e-06 56.6 64 37.5
FvH4_7g10351 Fragaria vesca HOM05D000003 ORTHO05D000004 1.6e-06 56.6 66 47.0
QL03p045098 Quercus lobata HOM05D000003 ORTHO05D000004 1.6e-06 56.6 73 37.0
Rhsim05G0174000 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-06 56.6 64 39.1
CANSAT11G1211 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-06 56.2 75 37.3
FvH4_2g13111 Fragaria vesca HOM05D000003 ORTHO05D011274 2.2e-06 56.2 62 43.5
FvH4_5g04240 Fragaria vesca HOM05D000003 ORTHO05D000004 2.2e-06 56.2 65 33.8
PSO170G2312 Papaver somniferum HOM05D000003 ORTHO05D001026 2.2e-06 56.2 64 39.1
Rhsim01G0174200 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.2e-06 56.2 59 37.3
TPR.G29120 Trifolium pratense HOM05D000003 ORTHO05D000004 2.2e-06 56.2 71 38.0
CANSAT11G2463 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-06 55.8 71 36.6
CANSAT21G0502 Cannabis sativa HOM05D000003 ORTHO05D000167 2.8e-06 55.8 76 34.2
CANSAT25G1225 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-06 55.8 77 35.1
CANSAT80G1789 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-06 55.8 65 43.1
Cpa.g.sc1105.1 Carica papaya HOM05D015597 ORTHO05D020338 2.8e-06 55.8 64 37.5
Manes.05G188350 Manihot esculenta HOM05D000003 ORTHO05D000004 2.8e-06 55.8 51 49.0
QL03p040497 Quercus lobata HOM05D000003 ORTHO05D000004 2.8e-06 55.8 63 46.0
QL08p047630 Quercus lobata HOM05D000003 ORTHO05D000004 2.8e-06 55.8 72 34.7
Rhsim06G0091800 Rhododendron simsii HOM05D000003 ORTHO05D000126 2.8e-06 55.8 74 37.8
Sed0012627 Sechium edule HOM05D000003 ORTHO05D000004 2.8e-06 55.8 80 36.2
CANSAT01G0249 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-06 55.5 78 33.3
CANSAT21G1723 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-06 55.5 74 31.1
CANSAT54G0632 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-06 55.5 70 35.7
AUR62030068 Chenopodium quinoa HOM05D000003 ORTHO05D000004 3.7e-06 55.5 73 38.4
Gohir.A11G140450 Gossypium hirsutum HOM05D013318 ORTHO05D012297 3.7e-06 55.5 65 38.5
Atru.chr5.2535 Acer truncatum HOM05D000003 ORTHO05D000004 4.8e-06 55.1 64 42.2
CANSAT01G2140 Cannabis sativa HOM05D000003 ORTHO05D000167 4.8e-06 55.1 74 35.1
CANSAT21G1260 Cannabis sativa HOM05D000003 ORTHO05D000167 4.8e-06 55.1 69 34.8
PSO170G4134 Papaver somniferum HOM05D000003 ORTHO05D000004 4.8e-06 55.1 76 40.8
QL09p026842 Quercus lobata HOM05D000003 ORTHO05D000004 4.8e-06 55.1 66 40.9
RcHm_v2.0_Chr7g0208481 Rosa chinensis HOM05D000003 ORTHO05D000004 4.8e-06 55.1 66 39.4
TPR.G36801 Trifolium pratense HOM05D000003 ORTHO05D000004 4.8e-06 55.1 87 32.2
Atru.chr1.2596 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-06 54.7 77 33.8
CANSAT25G2690 Cannabis sativa HOM05D000003 ORTHO05D000004 6.3e-06 54.7 77 35.1
COL.COLO4_15019 Corchorus olitorius HOM05D000003 ORTHO05D000004 6.3e-06 54.7 72 36.1
Haze_16466 Corylus avellana HOM05D004697 ORTHO05D006015 6.3e-06 54.7 73 34.2
FvH4_3g26221 Fragaria vesca HOM05D000003 ORTHO05D000004 6.3e-06 54.7 78 32.1
QL02p011410 Quercus lobata HOM05D000003 ORTHO05D000004 6.3e-06 54.7 69 39.1
QL05p051227 Quercus lobata HOM05D000003 ORTHO05D000004 6.3e-06 54.7 64 37.5
RhsimUnG0226300 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.3e-06 54.7 65 36.9
CANSAT11G0192 Cannabis sativa HOM05D000003 ORTHO05D000004 8.2e-06 54.3 69 36.2
AUR62018115 Chenopodium quinoa HOM05D000003 ORTHO05D000004 8.2e-06 54.3 78 29.5
QL01p044414 Quercus lobata HOM05D000414 ORTHO05D000276 8.2e-06 54.3 61 39.3
QL03p051237 Quercus lobata HOM05D000003 ORTHO05D000167 8.2e-06 54.3 67 38.8
QL08p029145 Quercus lobata HOM05D000003 ORTHO05D000004 8.2e-06 54.3 79 31.6
SGA_v2.0_scaffold122G33296 Striga asiatica HOM05D000003 ORTHO05D000004 8.2e-06 54.3 60 40.0
Thecc.02G206100 Theobroma cacao HOM05D000003 ORTHO05D000004 8.2e-06 54.3 69 30.4


User provided reference genes

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