Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 1.0e-111 406.8 201 100.0
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 8.2e-90 334.0 198 81.3
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 7.0e-89 330.9 197 82.2
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 7.0e-89 330.9 201 79.6
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.0e-88 329.3 197 80.7
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 2.0e-88 329.3 197 81.2
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.4e-88 328.6 201 80.1
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 3.4e-88 328.6 197 81.2
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 3.4e-88 328.6 197 81.2
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 4.5e-88 328.2 197 80.2
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 5.9e-88 327.8 197 79.2
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.0e-87 327.0 197 80.2
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.0e-87 327.0 197 80.2
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.0e-87 327.0 197 80.2
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.0e-87 327.0 197 80.2
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 2.2e-87 325.9 197 79.7
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 3.8e-87 325.1 201 76.6
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 3.8e-87 325.1 197 79.7
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 3.8e-87 325.1 197 80.2
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 6.5e-87 324.3 197 79.7
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 6.5e-87 324.3 198 79.3
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 8.5e-87 323.9 197 79.7
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.1e-86 323.6 208 77.4
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 1.9e-86 322.8 201 77.1
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 1.9e-86 322.8 198 80.3
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 2.5e-86 322.4 197 80.2
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 2.5e-86 322.4 197 80.2
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 3.2e-86 322.0 197 80.7
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 3.2e-86 322.0 201 77.1
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 4.2e-86 321.6 197 80.2
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 4.2e-86 321.6 201 78.6
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 5.5e-86 321.2 201 77.6
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 5.5e-86 321.2 198 78.3
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 7.2e-86 320.9 197 79.2
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 9.4e-86 320.5 201 77.6
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 9.4e-86 320.5 201 76.6
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.2e-85 320.1 201 76.1
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 2.7e-85 318.9 197 79.2
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.7e-85 318.9 201 76.1
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 4.7e-85 318.2 197 78.7
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 8.0e-85 317.4 197 78.7
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 8.0e-85 317.4 197 78.7
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 8.0e-85 317.4 201 76.6
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 8.0e-85 317.4 197 78.7
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 8.0e-85 317.4 201 75.1
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.0e-84 317.0 197 77.7
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.8e-84 316.2 201 75.1
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.8e-84 316.2 201 75.1
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.8e-84 316.2 201 75.6
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 2.3e-84 315.8 201 77.1
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.3e-84 315.8 197 76.1
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.3e-84 315.8 197 76.1
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 2.3e-84 315.8 201 75.1
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 5.2e-84 314.7 202 77.2
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 6.7e-84 314.3 198 78.3
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.1e-83 313.5 201 74.1
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.1e-83 313.5 197 75.6
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.1e-83 313.5 199 76.9
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.5e-83 313.2 201 74.1
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.5e-83 313.2 201 74.1
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.5e-83 313.2 203 73.4
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.5e-83 313.2 201 76.1
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.5e-83 313.2 197 77.2
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 1.5e-83 313.2 203 73.9
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.0e-83 312.8 201 74.1
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 2.0e-83 312.8 203 73.9
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.4e-83 311.6 198 77.3
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 4.4e-83 311.6 201 74.6
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 4.4e-83 311.6 198 76.8
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 5.7e-83 311.2 198 74.2
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 5.7e-83 311.2 201 72.6
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 5.7e-83 311.2 198 77.3
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 5.7e-83 311.2 198 76.8
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 7.4e-83 310.8 198 77.3
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 7.4e-83 310.8 198 77.3
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 9.7e-83 310.5 203 72.9
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 9.7e-83 310.5 201 75.6
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 1.3e-82 310.1 201 74.6
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.8e-82 308.9 194 76.8
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 2.8e-82 308.9 201 73.1
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 2.8e-82 308.9 202 75.7
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 2.8e-82 308.9 201 72.1
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 2.8e-82 308.9 202 72.8
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 4.8e-82 308.1 203 71.4
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 8.2e-82 307.4 221 70.6
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 8.2e-82 307.4 221 70.6
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 8.2e-82 307.4 197 74.1
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 8.2e-82 307.4 202 72.8
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.4e-81 306.6 201 74.6
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 1.4e-81 306.6 203 71.4
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 3.1e-81 305.4 199 73.9
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 4.1e-81 305.1 203 70.9
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 5.3e-81 304.7 197 73.1
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 5.3e-81 304.7 200 73.5
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 7.0e-81 304.3 199 73.9
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 7.0e-81 304.3 201 73.1
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.6e-80 303.1 202 74.3
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 3.5e-80 302.0 203 70.4
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 3.5e-80 302.0 196 73.5
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 4.5e-80 301.6 188 77.7
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 4.5e-80 301.6 200 73.0
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.3e-79 300.1 200 70.5
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.2e-79 299.3 201 70.1
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.8e-79 298.5 205 71.2
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 5.0e-79 298.1 234 62.0
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 6.5e-79 297.7 240 65.4
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.5e-78 295.8 202 72.3
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 9.4e-78 293.9 203 69.5
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 9.4e-78 293.9 204 72.1
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 1.6e-77 293.1 202 70.3
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 2.7e-77 292.4 201 69.7
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 2.7e-77 292.4 201 70.6
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 6.1e-77 291.2 204 69.1
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 8.0e-77 290.8 201 69.2
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 3.0e-76 288.9 196 70.9
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 6.7e-76 287.7 197 72.1
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 2.6e-75 285.8 198 68.7
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.4e-75 285.0 200 66.5
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 7.5e-75 284.3 201 68.7
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 2.8e-74 282.3 198 67.7
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 2.4e-73 279.3 178 77.0
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 3.1e-73 278.9 182 74.7
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 9.1e-73 277.3 201 68.2
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 1.6e-72 276.6 179 74.9
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 5.9e-72 274.6 179 73.2
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 4.7e-69 265.0 201 67.7
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.1e-61 239.6 157 73.2
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 2.1e-61 239.6 201 63.2
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 4.0e-60 235.3 157 75.2
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 8.9e-60 234.2 153 76.5
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.2e-59 233.8 153 75.2
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.6e-59 232.6 178 65.7
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 7.0e-57 224.6 198 51.0
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 1.6e-56 223.4 202 59.4
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.7e-56 222.6 129 81.4
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 5.9e-56 221.5 134 78.4
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 5.2e-52 208.4 185 56.2
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 2.5e-46 189.5 194 55.2
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 2.5e-46 189.5 194 55.2
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 8.0e-45 184.5 179 52.5
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 1.9e-41 173.3 135 64.4
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 3.2e-41 172.6 171 46.8
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 8.6e-39 164.5 121 67.8
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.9e-38 163.3 137 56.9
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.5e-30 137.1 92 75.0
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 2.8e-29 132.9 84 78.6
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 3.2e-25 119.4 73 74.0
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.9e-22 110.2 180 36.7
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 4.3e-22 109.0 82 68.3
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 5.6e-22 108.6 63 79.4
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.4e-20 104.0 175 35.4
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 2.6e-19 99.8 95 60.0
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 3.8e-18 95.9 110 50.0
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 3.8e-18 95.9 110 50.0
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 7.3e-14 81.6 83 55.4
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 2.6e-11 73.2 81 54.3
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 3.2e-09 66.2 46 63.0
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 2.1e-08 63.5 236 26.3
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.8e-07 60.5 38 73.7
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 3.9e-07 59.3 52 55.8
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 6.7e-07 58.5 66 48.5
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 2.5e-06 56.6 178 27.5
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 4.3e-06 55.8 51 54.9


User provided reference genes

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