Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c36772 Carica papaya HOM05D000084 ORTHO05D119200 4.6e-38 160.6 74 100.0
Cpa.g.c44662 Carica papaya HOM05D000084 ORTHO05D039845 1.2e-35 152.5 73 94.5
Manes.18G001200 Manihot esculenta HOM05D000084 ORTHO05D000639 1.7e-08 62.4 69 53.6
Cpa.g.c24967.3 Carica papaya HOM05D000084 ORTHO05D000639 1.9e-07 58.9 49 65.3
Lsat_1_v5_gn_8_26701 Lactuca sativa HOM05D000084 ORTHO05D000639 1.9e-07 58.9 73 46.6
Lj5g0022096 Lotus japonicus HOM05D000084 ORTHO05D000639 1.9e-07 58.9 67 52.2
Ciclev10002132m.g Citrus clementina HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Duzib041G0235 Durio zibethinus HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Duzib093G0878 Durio zibethinus HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Gohir.A01G101600 Gossypium hirsutum HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Gohir.D01G086700 Gossypium hirsutum HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Gorai.002G112300 Gossypium raimondii HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Lalb_Chr03g0033701 Lupinus albus HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Manes.05G129300 Manihot esculenta HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Medtr1g075610 Medicago truncatula HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Psat6g124080 Pisum sativum HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Potri.005G257500 Populus trichocarpa HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Sabra02G0002200 Salix brachista HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Sabra05G0199400 Salix brachista HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
Thecc.08G098500 Theobroma cacao HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
TPR.G10069 Trifolium pratense HOM05D000084 ORTHO05D000639 2.5e-07 58.5 49 65.3
CiPaw.07G132000 Carya illinoinensis HOM05D000084 ORTHO05D000639 3.2e-07 58.2 49 65.3
TWI56G1020 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 3.2e-07 58.2 49 63.3
EL10Ac1g01853 Beta vulgaris HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
AUR62035182 Chenopodium quinoa HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
AUR62043316 Chenopodium quinoa HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
Dinv05505 Davidia involucrata HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
Dinv23335 Davidia involucrata HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
Hma1.2p1_0489F.1_g164170 Hydrangea macrophylla HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
Lsat_1_v5_gn_8_26000 Lactuca sativa HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
Nn5g31064 Nelumbo nucifera HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
Phvul.001G000500 Phaseolus vulgaris HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
Hund05068 Selenicereus undatus HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
Sc06g0008840 Simmondsia chinensis HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
Sc26g0004770 Simmondsia chinensis HOM05D000084 ORTHO05D000639 4.2e-07 57.8 48 64.6
TAR376G0415 Trochodendron aralioides HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
GSVIVG01013440001 Vitis vinifera HOM05D000084 ORTHO05D000639 4.2e-07 57.8 49 63.3
Actinidia17085 Actinidia chinensis HOM05D000084 ORTHO05D000639 5.5e-07 57.4 49 61.2
CSS0012344 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D000639 5.5e-07 57.4 49 61.2
HanXRQChr07g0204231 Helianthus annuus HOM05D000084 ORTHO05D000639 5.5e-07 57.4 49 63.3
Lalb_Chr01g0008261 Lupinus albus HOM05D000084 ORTHO05D000639 5.5e-07 57.4 49 63.3
Lalb_Chr01g0008271 Lupinus albus HOM05D000084 ORTHO05D000639 5.5e-07 57.4 49 63.3
Rhsim06G0002200 Rhododendron simsii HOM05D000084 ORTHO05D000639 5.5e-07 57.4 49 61.2
vmacro21746 Vaccinium macrocarpon HOM05D000084 ORTHO05D000639 5.5e-07 57.4 49 61.2
Atru.chr13.38 Acer truncatum HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
CANSAT25G2227 Cannabis sativa HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
CANSAT54G1044 Cannabis sativa HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
ClCG11G019050 Citrullus lanatus HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
MELO3C017059.2 Cucumis melo HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
CsaV3_4G037650 Cucumis sativus L. HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
Glyma.14G224000 Glycine max HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
Glyma.17G262300 Glycine max HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
MD00G1064000 Malus domestica HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
MD06G1002500 Malus domestica HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
Prupe.5G003700 Prunus persica HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
QL02p015981 Quercus lobata HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
RcHm_v2.0_Chr7g0217191 Rosa chinensis HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
Sed0009546 Sechium edule HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
VMungo0647G1324 Vigna mungo HOM05D000084 ORTHO05D000639 7.1e-07 57.0 49 63.3
Eucgr.F01814 Eucalyptus grandis HOM05D000084 ORTHO05D000639 9.3e-07 56.6 49 61.2
PGR083G0146 Punica granatum HOM05D000084 ORTHO05D000639 9.3e-07 56.6 49 61.2
Ah.11g051150 Amaranthus hybridus HOM05D000084 ORTHO05D000639 1.2e-06 56.2 49 61.2
MSTRG.24901 Avicennia marina HOM05D000084 ORTHO05D000639 1.2e-06 56.2 49 61.2
Cc05_g04100 Coffea canephora HOM05D000084 ORTHO05D000639 1.2e-06 56.2 49 61.2
Migut.C00348 Erythranthe guttata HOM05D000084 ORTHO05D000639 1.2e-06 56.2 49 61.2
Glyma.09G071300 Glycine max HOM05D000084 ORTHO05D000639 1.2e-06 56.2 49 63.3
Oeu030366.1 Olea europaea HOM05D000084 ORTHO05D000639 1.2e-06 56.2 49 61.2
Oeu032528.1 Olea europaea HOM05D000084 ORTHO05D000639 1.2e-06 56.2 49 61.2
SalBow7G1645 Salvia bowleyana HOM05D000084 ORTHO05D000639 1.2e-06 56.2 49 61.2
SGA_v2.0_scaffold161G37863 Striga asiatica HOM05D000084 ORTHO05D000639 1.2e-06 56.2 49 61.2
SGA_v2.0_scaffold26G11250 Striga asiatica HOM05D000084 ORTHO05D000639 1.2e-06 56.2 49 61.2
unitig_26.g9847 Utricularia gibba HOM05D000924 ORTHO05D001209 1.2e-06 56.2 49 61.2
arahy.Tifrunner.gnm1.ann1.Q1AFG0 Arachis hypogaea HOM05D000084 ORTHO05D000639 1.6e-06 55.8 49 61.2
Sp1g18640 Schrenkiella parvula HOM05D000084 ORTHO05D000639 1.6e-06 55.8 49 59.2
Cfa014148 Carpinus fangiana HOM05D000084 ORTHO05D000639 2.1e-06 55.5 49 63.3
Haze_22873 Corylus avellana HOM05D000084 ORTHO05D000639 2.1e-06 55.5 49 63.3
Glyma.07G070200 Glycine max HOM05D000084 ORTHO05D000639 2.1e-06 55.5 49 63.3
Potri.002G003400 Populus trichocarpa HOM05D000084 ORTHO05D000639 2.1e-06 55.5 49 63.3
THA.LOC104813283 Tarenaya hassleriana HOM05D000084 ORTHO05D000639 2.1e-06 55.5 49 59.2
TWI36G1611 Tripterygium wilfordii HOM05D000084 ORTHO05D000639 2.1e-06 55.5 49 63.3
Aa31LG7G5120 Aethionema arabicum HOM05D000084 ORTHO05D000639 2.7e-06 55.1 49 59.2
AL1G33960 Arabidopsis lyrata HOM05D000084 ORTHO05D000639 2.7e-06 55.1 49 59.2
AT1G20930 Arabidopsis thaliana HOM05D000084 ORTHO05D000639 2.7e-06 55.1 49 59.2
Carub.0001s2041 Capsella rubella HOM05D000084 ORTHO05D000639 2.7e-06 55.1 49 59.2
Thhalv10008253m.g Eutrema salsugineum HOM05D000084 ORTHO05D000639 2.7e-06 55.1 49 59.2
BcaB03g14291 Brassica carinata HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 59.2
BcaC06g34849 Brassica carinata HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 59.2
A07p15380 Brassica napus HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 59.2
C07p22690 Brassica napus HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 59.2
BolC7t42801H Brassica oleracea HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 59.2
BraA07t29277Z Brassica rapa HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 59.2
CAN.G1330.20 Capsicum annuum HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 57.1
CARHR021400 Cardamine hirsuta HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 59.2
FvH4_5g26360 Fragaria vesca HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 61.2
FAN04G0258 Fragaria x ananassa HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 61.2
FAN08G0216 Fragaria x ananassa HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 61.2
FAN13G0297 Fragaria x ananassa HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 61.2
FAN18G2300 Fragaria x ananassa HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 61.2
MBI01_g22965_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 61.2
Nitab4.5_0000464g0050 Nicotiana tabacum HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 57.1
Nitab4.5_0008114g0020 Nicotiana tabacum HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 57.1
PSO541G0099 Papaver somniferum HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 61.2
PSO675G4169 Papaver somniferum HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 61.2
Peaxi162Scf00385g00520 Petunia axillaris HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 57.1
Solyc04g082840.4 Solanum lycopersicum HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 57.1
Sopen04g036480 Solanum pennellii HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 57.1
PGSC0003DMG400010003 Solanum tuberosum HOM05D000084 ORTHO05D000639 3.5e-06 54.7 49 57.1
Aqoxy5G00955 Aquilegia oxysepala HOM05D000084 ORTHO05D000639 4.6e-06 54.3 49 59.2
CANSAT25G2385 Cannabis sativa HOM05D000084 ORTHO05D000639 4.6e-06 54.3 48 60.4
CDE05G0736 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 7.9e-06 53.5 49 59.2
CDE05G2751 Ceratophyllum demersum HOM05D000084 ORTHO05D000639 7.9e-06 53.5 49 59.2
ECA233G4563 Erigeron canadensis HOM05D000084 ORTHO05D000639 7.9e-06 53.5 49 61.2
HPP92_017808 Vanilla planifolia HOM05D000084 ORTHO05D000639 7.9e-06 53.5 49 61.2


User provided reference genes

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