Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 2.8e-94 348.6 173 100.0
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 6.9e-45 184.5 185 54.1
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.7e-43 179.9 168 58.3
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 2.9e-43 179.1 182 54.4
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 5.0e-43 178.3 182 53.8
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 9.4e-42 174.1 178 54.5
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 2.1e-41 172.9 177 55.9
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 3.6e-41 172.2 188 52.1
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 3.6e-41 172.2 178 53.9
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 6.1e-41 171.4 178 54.5
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 5.7e-39 164.9 172 57.0
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 7.4e-39 164.5 181 55.8
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.3e-38 163.7 176 54.0
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 8.2e-38 161.0 173 54.3
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 1.1e-37 160.6 173 56.6
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.4e-37 159.5 193 49.7
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 5.3e-37 158.3 194 48.5
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 9.1e-37 157.5 195 49.2
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 1.5e-36 156.8 174 53.4
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 7.7e-36 154.5 175 51.4
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 1.3e-35 153.7 199 49.2
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 2.2e-35 152.9 157 54.8
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 6.5e-35 151.4 179 51.4
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 1.4e-34 150.2 163 52.8
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 1.4e-34 150.2 177 52.5
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 1.9e-34 149.8 156 56.4
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 3.2e-34 149.1 169 53.3
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 2.1e-33 146.4 188 48.4
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.1e-33 146.4 169 49.1
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 3.6e-33 145.6 179 49.2
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 4.7e-33 145.2 161 53.4
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 6.1e-33 144.8 169 50.9
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 7.9e-33 144.4 161 53.4
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 1.0e-32 144.1 193 45.1
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 1.4e-32 143.7 126 57.1
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 1.8e-32 143.3 197 46.7
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 2.3e-32 142.9 169 51.5
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 2.3e-32 142.9 169 51.5
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 6.7e-32 141.4 174 49.4
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 5.7e-31 138.3 174 47.7
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 5.7e-31 138.3 174 47.7
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 5.7e-31 138.3 169 49.1
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 1.8e-29 133.3 192 44.3
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 2.0e-28 129.8 189 42.9
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 2.0e-28 129.8 149 50.3
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 3.5e-28 129.0 174 45.4
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.3e-27 127.1 156 48.1
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 5.0e-27 125.2 168 47.0
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 1.1e-26 124.0 149 47.0
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 1.5e-26 123.6 161 47.2
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 2.5e-26 122.9 167 47.3
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 4.2e-26 122.1 169 48.5
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 1.6e-25 120.2 195 41.5
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 2.6e-23 112.8 157 43.9
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 2.8e-22 109.4 106 58.5
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 4.1e-21 105.5 158 38.0
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.6e-20 102.8 107 49.5
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 6.5e-19 98.2 120 45.0
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 8.5e-19 97.8 167 36.5
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 2.5e-18 96.3 181 37.6
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 2.1e-17 93.2 140 39.3
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.8e-16 90.1 161 35.4
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 6.8e-16 88.2 159 33.3
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.2e-15 87.4 126 37.3
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.5e-15 87.0 156 33.3
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.6e-15 86.3 165 33.3
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.7e-15 85.1 151 31.8
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 7.5e-15 84.7 150 32.7
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 1.7e-14 83.6 175 29.7
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 2.2e-14 83.2 128 34.4
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 2.2e-14 83.2 143 31.5
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 2.8e-14 82.8 169 32.5
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 3.7e-14 82.4 157 31.8
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 4.8e-14 82.0 145 29.7
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 6.3e-14 81.6 178 30.9
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 8.3e-14 81.3 143 35.0
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 8.3e-14 81.3 176 30.1
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 8.3e-14 81.3 189 31.7
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.4e-13 80.5 183 30.1
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.4e-13 80.5 147 32.7
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 1.4e-13 80.5 137 32.8
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.4e-13 80.5 137 32.8
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.4e-13 80.5 137 32.8
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.4e-13 80.5 143 35.0
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 1.4e-13 80.5 133 35.3
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 1.4e-13 80.5 168 31.0
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 1.8e-13 80.1 193 29.0
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 2.4e-13 79.7 148 33.1
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 3.1e-13 79.3 164 29.3
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 3.1e-13 79.3 193 30.6
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 3.1e-13 79.3 181 32.6
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 3.1e-13 79.3 68 57.4
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 5.4e-13 78.6 174 30.5
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 5.4e-13 78.6 167 32.3
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 5.4e-13 78.6 192 30.7
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 5.4e-13 78.6 181 30.9
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 7.0e-13 78.2 189 31.7
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 7.0e-13 78.2 143 34.3
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 7.0e-13 78.2 168 31.0
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 9.1e-13 77.8 212 27.8
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 9.1e-13 77.8 149 32.9
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 9.1e-13 77.8 161 29.2
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 9.1e-13 77.8 137 32.1
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.2e-12 77.4 181 30.4
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 1.6e-12 77.0 159 32.1
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.6e-12 77.0 162 29.0
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.6e-12 77.0 192 30.2
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 2.0e-12 76.6 191 31.4
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 3.5e-12 75.9 181 29.3
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 5.9e-12 75.1 148 29.1
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 5.9e-12 75.1 185 30.3
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 7.7e-12 74.7 175 29.1
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.3e-11 73.9 184 30.4
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.7e-11 73.6 165 28.5
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 2.2e-11 73.2 178 29.2
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 2.2e-11 73.2 207 29.5
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 2.9e-11 72.8 177 29.4
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 2.9e-11 72.8 156 29.5
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 3.8e-11 72.4 200 27.5
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 5.0e-11 72.0 192 28.6
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 5.0e-11 72.0 172 31.4
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 5.0e-11 72.0 181 27.6
RcHm_v2.0_Chr4g0408971 Rosa chinensis HOM05D002704 ORTHO05D002891 5.0e-11 72.0 114 38.6
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 5.0e-11 72.0 170 28.2
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 6.5e-11 71.6 169 27.2
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 6.5e-11 71.6 194 28.9
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 6.5e-11 71.6 180 27.2
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 6.5e-11 71.6 151 29.1
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 8.5e-11 71.2 190 27.4
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 8.5e-11 71.2 182 28.6
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 1.1e-10 70.9 179 29.1
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.1e-10 70.9 189 28.0
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 1.5e-10 70.5 156 30.1
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 2.5e-10 69.7 185 28.1
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 3.2e-10 69.3 187 29.9
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 5.5e-10 68.6 194 28.4
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 5.5e-10 68.6 184 28.8
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 5.5e-10 68.6 154 28.6
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 7.2e-10 68.2 160 26.9
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 7.2e-10 68.2 189 28.0
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 7.2e-10 68.2 145 29.0
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 9.4e-10 67.8 188 25.5
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 9.4e-10 67.8 168 32.1
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 1.2e-09 67.4 167 26.9
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.2e-09 67.4 153 30.7
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 2.7e-09 66.2 200 28.0
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 4.7e-09 65.5 204 27.0
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 4.7e-09 65.5 161 26.1
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 6.1e-09 65.1 199 25.1
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 6.1e-09 65.1 189 28.6
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 6.1e-09 65.1 196 25.5
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 1.0e-08 64.3 199 25.1
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 1.0e-08 64.3 184 29.3
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.4e-08 63.9 202 29.2
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 1.4e-08 63.9 169 31.4
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 5.2e-08 62.0 205 25.9
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 5.2e-08 62.0 162 26.5
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 8.8e-08 61.2 193 26.9
CDE12G0481 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 8.8e-08 61.2 135 30.4
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.2e-07 60.8 171 28.7
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.2e-07 60.8 197 26.9
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 2.0e-07 60.1 133 27.1
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 2.6e-07 59.7 147 26.5
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 3.4e-07 59.3 144 30.6
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 3.4e-07 59.3 192 26.6
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 3.4e-07 59.3 135 31.1
PGR004G2379 Punica granatum HOM05D001667 ORTHO05D001508 4.4e-07 58.9 127 32.3
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 5.7e-07 58.5 152 32.2
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 7.5e-07 58.2 156 29.5
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 7.5e-07 58.2 131 31.3
MELO3C030199.2 Cucumis melo HOM05D002704 ORTHO05D002891 9.8e-07 57.8 77 51.9
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.7e-06 57.0 201 27.4
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.7e-06 57.0 131 30.5
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 2.2e-06 56.6 199 30.2
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 2.8e-06 56.2 202 29.2
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 3.7e-06 55.8 143 25.9
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 4.9e-06 55.5 169 27.2
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 4.9e-06 55.5 150 28.0
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 6.3e-06 55.1 207 28.5
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 8.3e-06 54.7 131 31.3
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 8.3e-06 54.7 198 28.8


User provided reference genes

Program Settings