Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c35822 Carica papaya HOM05D002119 ORTHO05D002209 6.1e-32 140.2 71 100.0
Cpa.g.sc11.146 Carica papaya HOM05D002119 ORTHO05D002209 6.1e-32 140.2 71 100.0
Atru.chr8.2247 Acer truncatum HOM05D002119 ORTHO05D002209 5.8e-14 80.5 72 62.5
Ciclev10010921m.g Citrus clementina HOM05D002119 ORTHO05D002209 1.7e-13 79.0 72 61.1
TWI74G0305 Tripterygium wilfordii HOM05D002119 ORTHO05D002209 2.9e-13 78.2 71 54.9
Dinv23114 Davidia involucrata HOM05D002119 ORTHO05D002209 4.9e-13 77.4 70 58.6
Haze_21006 Corylus avellana HOM05D002119 ORTHO05D002209 8.3e-13 76.6 67 59.7
Lj3g0009832 Lotus japonicus HOM05D002119 ORTHO05D002209 1.1e-12 76.3 73 57.5
TPR.G7158 Trifolium pratense HOM05D002119 ORTHO05D002209 1.1e-12 76.3 72 59.7
Actinidia11583 Actinidia chinensis HOM05D002119 ORTHO05D002209 1.9e-12 75.5 71 56.3
CSS0004127 Camellia sinensis var. sinensis HOM05D002119 ORTHO05D002209 3.2e-12 74.7 71 56.3
Medtr4g015850 Medicago truncatula HOM05D002119 ORTHO05D002209 5.4e-12 73.9 72 58.3
Lalb_Chr13g0291221 Lupinus albus HOM05D002119 ORTHO05D002209 7.1e-12 73.6 67 56.7
arahy.Tifrunner.gnm1.ann1.UPG8QI Arachis hypogaea HOM05D002119 ORTHO05D002209 9.2e-12 73.2 72 58.3
THA.LOC104816196 Tarenaya hassleriana HOM05D002119 ORTHO05D002209 1.2e-11 72.8 70 57.1
Thhalv10012442m.g Eutrema salsugineum HOM05D002119 ORTHO05D002209 1.6e-11 72.4 70 55.7
Ca_20255_v3 Cicer arietinum L. HOM05D002119 ORTHO05D002209 2.1e-11 72.0 65 56.9
arahy.Tifrunner.gnm1.ann1.W984CA Arachis hypogaea HOM05D002119 ORTHO05D002209 2.7e-11 71.6 72 56.9
Rhsim05G0216000 Rhododendron simsii HOM05D002119 ORTHO05D002209 2.7e-11 71.6 70 57.1
RhsimUnG0048500 Rhododendron simsii HOM05D002119 ORTHO05D002209 2.7e-11 71.6 70 57.1
Aa31LG1G23060 Aethionema arabicum HOM05D002119 ORTHO05D002209 3.5e-11 71.2 70 52.9
COL.COLO4_14531 Corchorus olitorius HOM05D002119 ORTHO05D002209 3.5e-11 71.2 70 58.6
Glyma.03G057600 Glycine max HOM05D002119 ORTHO05D002209 4.6e-11 70.9 67 56.7
Gohir.D01G217000 Gossypium hirsutum HOM05D002119 ORTHO05D002209 4.6e-11 70.9 71 59.2
Gorai.002G263300 Gossypium raimondii HOM05D002119 ORTHO05D002209 4.6e-11 70.9 71 59.2
AL6G10720 Arabidopsis lyrata HOM05D002119 ORTHO05D002209 6.0e-11 70.5 70 52.9
AT5G01400 Arabidopsis thaliana HOM05D002119 ORTHO05D002209 7.8e-11 70.1 70 51.4
Carub.0006s0042 Capsella rubella HOM05D002119 ORTHO05D002209 1.0e-10 69.7 70 52.9
Phvul.010G000700 Phaseolus vulgaris HOM05D002119 ORTHO05D002209 1.0e-10 69.7 67 56.7
VMungo0331G1463 Vigna mungo HOM05D002119 ORTHO05D002209 1.0e-10 69.7 67 56.7
Glyma.01G121400 Glycine max HOM05D002119 ORTHO05D002209 1.3e-10 69.3 67 55.2
Cfa017202 Carpinus fangiana HOM05D002119 ORTHO05D002209 1.7e-10 68.9 67 56.7
vmacro20280 Vaccinium macrocarpon HOM05D002119 ORTHO05D002209 2.3e-10 68.6 66 56.1
C02p00180 Brassica napus HOM05D002119 ORTHO05D002209 8.6e-10 66.6 64 54.7
BraA02t04689Z Brassica rapa HOM05D002119 ORTHO05D002209 8.6e-10 66.6 64 54.7
GSVIVG01011157001 Vitis vinifera HOM05D002119 ORTHO05D002209 1.9e-09 65.5 70 50.0
BcaC03g13074 Brassica carinata HOM05D002119 ORTHO05D002209 3.3e-09 64.7 73 50.7
BolC2t06016H Brassica oleracea HOM05D002119 ORTHO05D002209 4.3e-09 64.3 73 50.7
Psat7g245160 Pisum sativum HOM05D002119 ORTHO05D002209 4.3e-09 64.3 67 55.2
CsaV3_4G026290 Cucumis sativus L. HOM05D002119 ORTHO05D002209 7.3e-09 63.5 72 51.4
Potri.016G116600 Populus trichocarpa HOM05D002119 ORTHO05D002209 7.3e-09 63.5 72 51.4
Solyc09g005330.3 Solanum lycopersicum HOM05D002119 ORTHO05D002209 7.3e-09 63.5 68 51.5
Sopen09g001300 Solanum pennellii HOM05D002119 ORTHO05D002209 7.3e-09 63.5 68 51.5
MELO3C025994.2 Cucumis melo HOM05D002119 ORTHO05D002209 9.5e-09 63.2 72 51.4
Nn2g10847 Nelumbo nucifera HOM05D002119 ORTHO05D002209 9.5e-09 63.2 70 50.0
Sabra16G0112200 Salix brachista HOM05D002119 ORTHO05D002209 1.6e-08 62.4 72 50.0
Sc01g0006420 Simmondsia chinensis HOM05D002119 ORTHO05D002209 1.6e-08 62.4 72 50.0
ClCG04G006970 Citrullus lanatus HOM05D002119 ORTHO05D002209 2.1e-08 62.0 71 50.7
Lj3C953G3 Lonicera japonica HOM05D002119 ORTHO05D002209 2.8e-08 61.6 71 47.9
AUR62030459 Chenopodium quinoa HOM05D002119 ORTHO05D002209 3.6e-08 61.2 74 48.6
Nitab4.5_0013783g0010 Nicotiana tabacum HOM05D002119 ORTHO05D002209 3.6e-08 61.2 68 50.0
Duzib106G0650 Durio zibethinus HOM05D002119 ORTHO05D002209 4.7e-08 60.8 68 52.9
CANSAT35G1010 Cannabis sativa HOM05D002119 ORTHO05D002209 6.2e-08 60.5 71 50.7
Eucgr.B02805 Eucalyptus grandis HOM05D002119 ORTHO05D002209 8.1e-08 60.1 67 46.3
RcHm_v2.0_Chr3g0463071 Rosa chinensis HOM05D002119 ORTHO05D002209 1.1e-07 59.7 74 48.6
FAN02G1802 Fragaria x ananassa HOM05D002119 ORTHO05D002209 1.4e-07 59.3 74 47.3
Nitab4.5_0000490g0060 Nicotiana tabacum HOM05D002119 ORTHO05D002209 1.4e-07 59.3 68 48.5
BcaB05g21927 Brassica carinata HOM05D002119 ORTHO05D002209 1.8e-07 58.9 59 52.5
Manes.09G105300 Manihot esculenta HOM05D002119 ORTHO05D002209 1.8e-07 58.9 71 52.1
PGR031G1745 Punica granatum HOM05D002119 ORTHO05D002209 1.8e-07 58.9 67 43.3
FAN09G0011 Fragaria x ananassa HOM05D002119 ORTHO05D002209 2.4e-07 58.5 74 45.9
Cc06_g01300 Coffea canephora HOM05D002119 ORTHO05D002209 3.1e-07 58.2 65 47.7
Hund11005 Selenicereus undatus HOM05D002119 ORTHO05D002209 3.1e-07 58.2 69 50.7
CARHR211780 Cardamine hirsuta HOM05D002119 ORTHO05D002209 4.0e-07 57.8 66 48.5
FvH4_6g11410 Fragaria vesca HOM05D002119 ORTHO05D002209 6.8e-07 57.0 74 47.3
FAN14G0363 Fragaria x ananassa HOM05D002119 ORTHO05D002209 6.8e-07 57.0 74 47.3
FAN14G1249 Fragaria x ananassa HOM05D002119 ORTHO05D002209 6.8e-07 57.0 74 47.3
Peaxi162Scf00141g01224 Petunia axillaris HOM05D002119 ORTHO05D002209 6.8e-07 57.0 70 50.0
Aqoxy4G02550 Aquilegia oxysepala HOM05D002119 ORTHO05D002209 8.9e-07 56.6 69 46.4
QL07p019818 Quercus lobata HOM05D002119 ORTHO05D002209 1.2e-06 56.2 69 52.2
QL07p035631 Quercus lobata HOM05D002119 ORTHO05D002209 1.2e-06 56.2 69 52.2
CAN.G5.4 Capsicum annuum HOM05D002119 ORTHO05D002209 2.0e-06 55.5 68 45.6
AUR62010455 Chenopodium quinoa HOM05D002119 ORTHO05D002209 2.0e-06 55.5 74 45.9
AUR62043836 Chenopodium quinoa HOM05D002119 ORTHO05D002209 2.0e-06 55.5 74 45.9
Prupe.6G277600 Prunus persica HOM05D002119 ORTHO05D002209 3.4e-06 54.7 73 49.3
Lsat_1_v5_gn_9_34640 Lactuca sativa HOM05D002119 ORTHO05D002209 4.4e-06 54.3 71 46.5
ATR0681G274 Amborella trichopoda HOM05D002119 ORTHO05D002209 5.8e-06 53.9 70 41.4
MD12G1166800 Malus domestica HOM05D002119 ORTHO05D002209 5.8e-06 53.9 73 47.9
Ah.12g058640 Amaranthus hybridus HOM05D002119 ORTHO05D002209 7.6e-06 53.5 74 44.6


User provided reference genes

Program Settings