Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 7.1e-201 703.7 361 100.0
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 9.0e-79 298.1 396 48.2
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 5.8e-78 295.4 417 45.6
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.9e-76 290.4 417 45.8
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 3.2e-76 289.7 367 48.5
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 7.1e-76 288.5 388 47.2
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 3.9e-74 282.7 377 46.9
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 3.9e-74 282.7 398 45.5
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 6.2e-72 275.4 371 46.6
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 2.4e-71 273.5 402 45.5
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 4.0e-71 272.7 377 45.6
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 4.0e-71 272.7 388 45.1
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 6.9e-71 271.9 371 45.8
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 4.5e-70 269.2 373 44.8
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.3e-69 267.7 371 45.3
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 2.2e-69 266.9 412 41.7
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 2.9e-69 266.5 413 43.6
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 3.8e-69 266.2 378 45.2
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 5.5e-68 262.3 370 45.4
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 9.3e-68 261.5 382 45.0
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 1.3e-66 257.7 379 46.2
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 5.1e-66 255.8 374 44.9
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 5.1e-66 255.8 380 43.4
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 6.7e-66 255.4 398 41.5
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 8.7e-66 255.0 369 39.6
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 3.3e-65 253.1 380 44.7
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 4.8e-64 249.2 368 45.7
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 1.8e-63 247.3 388 43.3
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 1.8e-63 247.3 413 41.6
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.0e-63 246.1 389 42.7
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.0e-63 246.1 389 42.7
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 6.9e-63 245.4 393 40.7
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.5e-62 242.7 370 42.4
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 1.0e-61 241.5 377 43.5
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 1.3e-61 241.1 432 38.0
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 3.8e-61 239.6 424 38.0
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 4.9e-61 239.2 368 41.3
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 7.1e-60 235.3 391 40.7
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 9.3e-60 235.0 366 40.4
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 1.2e-59 234.6 361 42.9
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 2.7e-59 233.4 382 43.7
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.7e-59 233.4 379 42.7
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 2.7e-59 233.4 392 41.1
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 1.0e-58 231.5 364 43.1
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 1.0e-58 231.5 406 39.9
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 1.3e-58 231.1 361 42.4
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 1.3e-58 231.1 361 42.4
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 3.0e-58 229.9 386 40.2
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 3.9e-58 229.6 415 38.3
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 8.7e-58 228.4 366 39.9
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 8.7e-58 228.4 368 38.6
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.1e-57 228.0 362 41.2
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 1.1e-57 228.0 386 42.0
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 1.5e-57 227.6 361 43.2
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.9e-57 227.3 421 36.8
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.9e-57 227.3 361 42.1
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 3.3e-57 226.5 378 42.6
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 5.7e-57 225.7 374 39.6
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 9.6e-57 224.9 420 38.3
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.3e-56 224.6 368 42.4
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 2.1e-56 223.8 378 41.5
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 8.2e-56 221.9 363 41.0
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 8.2e-56 221.9 367 41.1
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 1.1e-55 221.5 363 41.0
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 5.3e-55 219.2 367 40.9
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 5.3e-55 219.2 373 42.1
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 1.5e-54 217.6 412 37.1
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 7.6e-54 215.3 367 41.4
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 1.0e-53 214.9 380 40.8
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 2.9e-53 213.4 371 42.3
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 6.5e-53 212.2 368 40.5
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.1e-52 211.5 363 41.9
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 1.1e-52 211.5 411 39.7
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 1.1e-52 211.5 382 39.5
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 1.4e-52 211.1 371 39.4
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.4e-52 211.1 383 39.7
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 7.2e-52 208.8 384 39.6
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 7.2e-52 208.8 386 38.9
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 9.3e-52 208.4 369 40.1
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 9.3e-52 208.4 381 39.1
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 3.6e-51 206.5 238 50.8
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.6e-51 206.5 377 39.0
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 6.1e-51 205.7 203 52.7
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 1.0e-50 204.9 372 40.6
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 1.0e-50 204.9 378 38.6
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 1.0e-50 204.9 370 39.2
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 1.3e-50 204.5 392 37.0
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.8e-50 204.1 216 51.4
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 2.3e-50 203.8 377 38.5
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.9e-50 203.0 377 38.7
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 5.1e-50 202.6 308 40.9
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 6.7e-50 202.2 376 38.0
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 8.7e-50 201.8 245 49.0
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.5e-49 200.3 214 47.7
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 4.3e-49 199.5 224 47.8
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 2.8e-48 196.8 414 35.3
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 4.8e-48 196.1 327 42.5
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.4e-47 194.5 364 38.7
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.4e-47 194.5 374 37.4
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.4e-47 193.7 196 56.1
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 3.1e-47 193.4 362 38.1
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 5.3e-47 192.6 368 38.3
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 6.9e-47 192.2 377 36.9
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.0e-45 188.3 361 37.1
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 2.2e-45 187.2 383 37.9
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 4.6e-43 179.5 389 35.7
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 9.1e-39 165.2 370 37.8
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 2.6e-38 163.7 366 34.4
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.5e-38 162.9 370 35.9
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 1.7e-37 161.0 363 33.9
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 2.2e-37 160.6 197 43.1
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 2.2e-37 160.6 396 34.1
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 5.0e-37 159.5 470 30.2
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 5.0e-37 159.5 368 37.2
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 6.5e-37 159.1 381 32.3
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 1.1e-36 158.3 363 33.6
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 1.4e-36 157.9 363 33.1
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 7.2e-36 155.6 200 46.5
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 9.4e-36 155.2 197 46.2
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.2e-35 154.8 217 42.9
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 2.1e-35 154.1 363 32.8
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 7.9e-35 152.1 512 29.1
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 1.4e-34 151.4 256 42.2
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 6.7e-34 149.1 198 46.0
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 8.8e-34 148.7 208 43.3
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 7.4e-33 145.6 363 33.3
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 9.7e-33 145.2 229 40.6
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.4e-31 141.4 199 43.2
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 3.5e-30 136.7 212 39.6
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 3.5e-30 136.7 230 40.4
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 5.9e-30 136.0 359 33.1
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 1.3e-29 134.8 177 41.8
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.7e-29 134.4 373 34.0
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 2.9e-29 133.7 387 32.6
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 3.8e-29 133.3 209 44.5
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 1.9e-28 131.0 202 44.1
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.9e-28 131.0 432 31.9
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 3.2e-28 130.2 205 41.5
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 4.2e-28 129.8 205 41.5
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 9.4e-28 128.6 215 38.1
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 5.2e-26 122.9 207 44.4
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 6.7e-26 122.5 241 39.8
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 7.5e-25 119.0 238 38.2
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.3e-24 118.2 206 34.5
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.8e-24 117.1 201 39.3
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 8.2e-24 115.5 366 27.9
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 1.8e-23 114.4 201 39.8
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 5.3e-23 112.8 434 32.3
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 9.1e-23 112.1 234 37.6
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.2e-22 111.7 239 37.7
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 1.2e-22 111.7 466 28.5
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 6.5e-21 105.9 360 28.6
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.1e-20 105.1 200 38.0
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 5.5e-20 102.8 183 40.4
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 5.5e-20 102.8 344 28.8
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 1.6e-19 101.3 174 36.2
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 4.7e-19 99.8 174 36.2
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 8.0e-19 99.0 272 32.0
PSO017G1120 Papaver somniferum HOM05D003497 ORTHO05D003964 4.4e-17 93.2 226 32.3
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 7.5e-17 92.4 187 36.9
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 7.5e-17 92.4 173 37.6
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 6.3e-16 89.4 369 28.2
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 3.1e-15 87.0 81 51.9
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 7.0e-15 85.9 86 44.2
SEGI_41103 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 1.9e-12 77.8 217 31.8
CiPaw.08G128300 Carya illinoinensis HOM05D000212 ORTHO05D003964 2.5e-12 77.4 134 41.0
Potri.017G134500 Populus trichocarpa HOM05D003497 ORTHO05D003964 5.5e-12 76.3 100 43.0
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 1.2e-11 75.1 209 30.1
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 4.7e-11 73.2 116 36.2
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 4.7e-11 73.2 89 51.7
PGR119G2181 Punica granatum HOM05D003497 ORTHO05D003964 8.0e-11 72.4 105 44.8
BcaC02g08834 Brassica carinata HOM05D003497 ORTHO05D003964 8.8e-10 68.9 163 30.1
BcaC02g08838 Brassica carinata HOM05D003497 ORTHO05D003964 8.8e-10 68.9 163 30.1
Migut.B00467 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.5e-09 68.2 111 37.8
C03p57300 Brassica napus HOM05D003497 ORTHO05D003964 2.6e-09 67.4 134 37.3
C08p22090 Brassica napus HOM05D003497 ORTHO05D024176 2.6e-09 67.4 169 33.7
BolC8t49854H Brassica oleracea HOM05D003497 ORTHO05D024176 2.6e-09 67.4 169 33.7
Os02g0272100 Oryza sativa ssp. japonica HOM05D019728 ORTHO05D023023 5.7e-09 66.2 180 28.9
Os10g0133100 Oryza sativa ssp. japonica HOM05D019728 ORTHO05D023023 7.5e-09 65.9 179 29.6
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.1e-07 62.0 100 38.0
arahy.Tifrunner.gnm1.ann1.HH0ZDZ Arachis hypogaea HOM05D003497 ORTHO05D003964 7.0e-07 59.3 69 40.6
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 7.0e-07 59.3 164 32.9


User provided reference genes

Program Settings