Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 6.7e-111 404.1 208 100.0
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 1.5e-107 392.9 208 96.2
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 2.0e-107 392.5 208 96.6
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 4.5e-107 391.3 208 95.2
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 5.9e-107 391.0 208 95.7
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 5.9e-107 391.0 208 95.2
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 5.9e-107 391.0 208 95.7
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 7.6e-107 390.6 208 94.7
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 7.6e-107 390.6 208 95.2
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.0e-106 390.2 208 95.2
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 1.3e-106 389.8 208 94.7
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 1.3e-106 389.8 208 95.2
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.7e-106 389.4 208 95.2
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.7e-106 389.4 208 95.2
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.2e-106 389.0 208 95.2
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.2e-106 389.0 208 95.2
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 2.9e-106 388.7 208 94.7
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.9e-106 388.7 208 94.7
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 5.0e-106 387.9 208 94.2
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 6.5e-106 387.5 208 93.8
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.5e-106 387.1 208 94.2
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.1e-105 386.7 208 93.8
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 1.9e-105 386.0 208 93.8
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 3.2e-105 385.2 206 94.2
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 3.2e-105 385.2 206 94.2
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 3.2e-105 385.2 208 93.3
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 94.2
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 4.2e-105 384.8 208 93.3
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 5.5e-105 384.4 208 93.3
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 7.2e-105 384.0 207 94.2
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 7.2e-105 384.0 208 93.8
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 92.8
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 1.6e-104 382.9 206 93.7
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 2.1e-104 382.5 208 92.8
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 3.6e-104 381.7 207 92.3
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 3.6e-104 381.7 208 92.3
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 4.6e-104 381.3 208 92.8
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 4.6e-104 381.3 208 91.8
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 4.6e-104 381.3 208 93.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 7.9e-104 380.6 208 91.8
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 1.0e-103 380.2 206 93.7
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 92.8
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.0e-103 380.2 208 92.3
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.0e-103 378.6 208 91.3
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 3.0e-103 378.6 208 90.9
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 3.9e-103 378.3 206 92.2
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.1e-103 377.9 213 91.1
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 90.9
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 91.3
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 8.8e-103 377.1 210 91.4
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 8.8e-103 377.1 208 91.8
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.5e-102 376.3 206 91.7
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.5e-102 376.3 207 90.8
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 2.5e-102 375.6 208 90.9
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 4.3e-102 374.8 207 90.3
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 4.3e-102 374.8 207 92.8
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 4.3e-102 374.8 208 89.4
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 2.8e-101 372.1 206 91.3
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 4.8e-101 371.3 208 88.9
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 4.8e-101 371.3 209 90.4
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 6.3e-101 370.9 206 88.8
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 6.3e-101 370.9 218 87.2
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 1.1e-100 370.2 206 90.8
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 88.9
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 89.9
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 89.9
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 89.9
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.8e-100 369.4 207 89.4
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.8e-100 369.4 206 88.8
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 209 90.0
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 2.4e-100 369.0 208 89.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 2.4e-100 369.0 205 91.2
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 3.1e-100 368.6 208 89.9
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 5.3e-100 367.9 208 89.4
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 6.9e-100 367.5 203 91.1
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.2e-99 366.7 205 90.7
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 88.9
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.5e-99 366.3 206 88.8
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.5e-99 366.3 208 89.4
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.5e-99 366.3 209 89.0
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.5e-99 366.3 209 89.0
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.9
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 88.9
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 4.5e-99 364.8 208 88.9
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 87.9
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 5.9e-99 364.4 208 91.3
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 1.0e-98 363.6 207 90.8
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 1.0e-98 363.6 207 87.9
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 88.0
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 88.0
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.3e-98 363.2 206 88.8
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 87.5
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 3.8e-98 361.7 196 93.4
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 85.6
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 4.7e-96 354.8 208 84.1
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 4.7e-96 354.8 208 83.7
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 5.1e-95 351.3 208 86.5
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 1.5e-94 349.7 208 86.1
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.6e-94 349.0 207 86.0
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.6e-94 349.0 207 86.0
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 9.7e-94 347.1 207 85.5
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 4.1e-92 341.7 178 96.1
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 4.1e-92 341.7 178 96.1
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 9.1e-92 340.5 207 83.6
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.2e-91 340.1 208 85.6
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.5e-91 339.7 179 95.0
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 2.9e-90 335.5 178 94.9
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.6e-88 329.7 206 84.5
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 3.0e-87 325.5 177 90.4
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 6.7e-87 324.3 208 76.4
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 4.4e-86 321.6 190 86.3
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.3e-85 320.1 210 83.3
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 2.8e-85 318.9 179 87.7
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 3.1e-84 315.5 208 80.8
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 3.3e-78 295.4 205 76.1
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 6.3e-77 291.2 167 86.2
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 1.1e-76 290.4 156 92.9
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 2.7e-75 285.8 156 92.3
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 5.9e-75 284.6 207 74.4
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.7e-70 268.1 211 70.6
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 1.6e-67 260.0 202 63.4
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 4.5e-67 258.5 203 62.6
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.3e-66 256.9 206 68.0
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 3.8e-66 255.4 200 61.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 2.8e-64 249.2 197 62.9
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 1.5e-62 243.4 162 80.2
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 2.9e-58 229.2 205 53.7
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.5e-57 226.1 120 92.5
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.5e-57 226.1 133 89.5
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.9e-52 209.9 207 52.2
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.2e-52 209.1 151 74.8
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 7.0e-52 208.0 148 73.0
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 3.0e-50 202.6 207 52.2
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 2.1e-48 196.4 198 48.5
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 6.2e-48 194.9 209 55.5
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 2.6e-46 189.5 196 46.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.9e-42 175.6 231 43.3
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 5.1e-42 175.3 160 64.4
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 4.7e-40 168.7 98 84.7
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 8.1e-40 167.9 208 49.5
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 7.3e-33 144.8 206 46.6
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.1e-31 141.0 96 78.1
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 3.1e-31 139.4 99 73.7
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 8.9e-31 137.9 187 38.5
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 6.4e-29 131.7 74 87.8
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 2.4e-28 129.8 92 72.8
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.6e-27 127.1 83 75.9
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 2.1e-27 126.7 135 56.3
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.5e-25 120.6 60 91.7
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 1.4e-23 114.0 82 70.7
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 2.6e-22 109.8 74 78.4
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 1.9e-20 103.6 60 85.0
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 2.4e-12 76.6 61 62.3
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 3.0e-10 69.7 62 66.1
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 2.8e-08 63.2 39 74.4
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.1e-07 61.2 38 73.7
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 5.3e-07 58.9 47 72.3


User provided reference genes

Program Settings