Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 5.2e-19 96.7 47 100.0
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 3.5e-15 84.0 47 85.1
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 8.5e-14 79.3 45 84.4
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 3.2e-13 77.4 47 80.9
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.5e-13 76.6 47 76.6
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 7.2e-13 76.3 47 74.5
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 7.2e-13 76.3 47 74.5
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.2e-12 75.5 47 76.6
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.6e-12 75.1 47 72.3
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.1e-12 74.7 47 74.5
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 2.1e-12 74.7 47 74.5
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 8.0e-12 72.8 47 74.5
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 1.8e-11 71.6 46 71.7
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 2.3e-11 71.2 47 70.2
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 3.0e-11 70.9 47 72.3
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 5.2e-11 70.1 47 74.5
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 5.2e-11 70.1 47 68.1
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 8.8e-11 69.3 46 76.1
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.5e-10 68.6 47 66.0
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 2.0e-10 68.2 47 66.0
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 2.0e-10 68.2 47 66.0
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 2.0e-10 68.2 47 68.1
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 2.0e-10 68.2 47 61.7
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 2.6e-10 67.8 47 68.1
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 2.6e-10 67.8 47 68.1
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 2.6e-10 67.8 47 68.1
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 2.6e-10 67.8 47 68.1
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 2.6e-10 67.8 47 68.1
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 2.6e-10 67.8 47 68.1
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 2.6e-10 67.8 47 68.1
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 2.6e-10 67.8 47 63.8
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 2.6e-10 67.8 40 80.0
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 4.4e-10 67.0 46 65.2
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 5.7e-10 66.6 42 76.2
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 7.5e-10 66.2 47 66.0
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 7.5e-10 66.2 47 66.0
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 9.8e-10 65.9 47 63.8
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 1.3e-09 65.5 47 66.0
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 1.3e-09 65.5 47 66.0
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.3e-09 65.5 47 59.6
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 1.3e-09 65.5 46 65.2
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 1.7e-09 65.1 47 63.8
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.7e-09 65.1 46 65.2
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.2e-09 64.7 47 61.7
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 3.7e-09 63.9 47 63.8
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 3.7e-09 63.9 47 61.7
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.7e-09 63.9 47 61.7
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 3.7e-09 63.9 47 63.8
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 4.8e-09 63.5 44 68.2
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 8.3e-09 62.8 47 59.6
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 8.3e-09 62.8 47 59.6
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 1.8e-08 61.6 46 58.7
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.8e-08 61.6 47 55.3
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 2.4e-08 61.2 43 69.8
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 2.4e-08 61.2 44 61.4
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 2.4e-08 61.2 47 57.4
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 3.1e-08 60.8 46 60.9
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 3.1e-08 60.8 47 55.3
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 3.1e-08 60.8 47 55.3
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 3.1e-08 60.8 47 55.3
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 5.4e-08 60.1 47 59.6
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 9.1e-08 59.3 46 60.9
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 1.2e-07 58.9 45 64.4
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 2.7e-07 57.8 47 57.4
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 3.5e-07 57.4 47 55.3
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 4.5e-07 57.0 47 59.6
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 4.5e-07 57.0 42 61.9
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 5.9e-07 56.6 47 53.2
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 7.7e-07 56.2 44 63.6
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.3e-06 55.5 44 63.6
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.7e-06 55.1 44 59.1
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 1.7e-06 55.1 44 56.8
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 2.2e-06 54.7 44 59.1
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 3.8e-06 53.9 44 61.4
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 6.5e-06 53.1 44 59.1
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 6.5e-06 53.1 44 59.1
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 6.5e-06 53.1 40 62.5
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 6.5e-06 53.1 44 59.1
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 6.5e-06 53.1 47 51.1
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 8.5e-06 52.8 43 60.5
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 8.5e-06 52.8 43 60.5


User provided reference genes

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