Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c34976 Carica papaya HOM05D002939 ORTHO05D003391 5.2e-43 177.2 82 100.0
Cpa.g.sc121.15 Carica papaya HOM05D002939 ORTHO05D003391 6.0e-23 110.5 71 73.2
Cpa.g.c29435 Carica papaya HOM05D002939 ORTHO05D003391 6.7e-22 107.1 67 71.6
Cpa.g.c38165 Carica papaya HOM05D002939 ORTHO05D003391 2.1e-20 102.1 71 67.6
Cpa.g.sc80.103 Carica papaya HOM05D002939 ORTHO05D003391 5.3e-19 97.4 66 63.6
Cpa.g.c31099 Carica papaya HOM05D038583 ORTHO05D119245 9.0e-19 96.7 68 66.2
Cpa.g.sc1630.1 Carica papaya HOM05D002939 ORTHO05D003391 9.0e-19 96.7 67 62.7
Cpa.g.c41245 Carica papaya HOM05D038583 ORTHO05D120114 2.9e-17 91.7 58 74.1
Cpa.g.sc2483.1 Carica papaya HOM05D038583 ORTHO05D116758 3.0e-14 81.6 54 70.4
Cpa.g.sc80.104 Carica papaya HOM05D002939 ORTHO05D003391 1.9e-13 79.0 73 53.4
Duzib268G1116 Durio zibethinus HOM05D002939 ORTHO05D003391 5.3e-11 70.9 68 47.1
Glyma.06G252100 Glycine max HOM05D002939 ORTHO05D003391 5.3e-11 70.9 68 50.0
Gohir.D05G361500 Gossypium hirsutum HOM05D002939 ORTHO05D003391 6.9e-11 70.5 68 47.1
Gorai.009G431300 Gossypium raimondii HOM05D002939 ORTHO05D003391 6.9e-11 70.5 68 47.1
Duzib213G1065 Durio zibethinus HOM05D002939 ORTHO05D003391 1.5e-10 69.3 67 46.3
CANSAT11G1650 Cannabis sativa HOM05D002939 ORTHO05D003391 2.6e-10 68.6 68 47.1
Ciclev10010695m.g Citrus clementina HOM05D002939 ORTHO05D003391 3.4e-10 68.2 68 47.1
Gohir.A04G026800 Gossypium hirsutum HOM05D002939 ORTHO05D003391 4.5e-10 67.8 68 44.1
Gohir.A04G026700 Gossypium hirsutum HOM05D002939 ORTHO05D003391 1.0e-09 66.6 68 42.6
Thecc.07G073100 Theobroma cacao HOM05D002939 ORTHO05D003391 1.0e-09 66.6 68 45.6
Duzib213G0790 Durio zibethinus HOM05D002939 ORTHO05D003391 2.2e-09 65.5 67 46.3
Glyma.06G250500 Glycine max HOM05D002939 ORTHO05D003391 3.8e-09 64.7 66 47.0
Glyma.06G250300 Glycine max HOM05D002939 ORTHO05D003391 5.0e-09 64.3 66 47.0
TPR.G27079 Trifolium pratense HOM05D002939 ORTHO05D003391 5.0e-09 64.3 68 45.6
Glyma.06G250400 Glycine max HOM05D002939 ORTHO05D003391 6.5e-09 63.9 66 47.0
Glyma.06G250901 Glycine max HOM05D002939 ORTHO05D003391 8.4e-09 63.5 49 57.1
Lalb_Chr19g0134441 Lupinus albus HOM05D002939 ORTHO05D003391 8.4e-09 63.5 67 44.8
Dinv23696 Davidia involucrata HOM05D002939 ORTHO05D003391 1.9e-08 62.4 68 42.6
Lj3g0007977 Lotus japonicus HOM05D002939 ORTHO05D003391 1.9e-08 62.4 68 38.2
Atru.chr2.2835 Acer truncatum HOM05D002939 ORTHO05D003391 2.5e-08 62.0 68 45.6
COL.COLO4_09468 Corchorus olitorius HOM05D002939 ORTHO05D003391 3.2e-08 61.6 62 46.8
Psat5g270120 Pisum sativum HOM05D002939 ORTHO05D003391 3.2e-08 61.6 68 42.6
Dinv15472 Davidia involucrata HOM05D002939 ORTHO05D003391 4.2e-08 61.2 68 41.2
Lj3g0001486 Lotus japonicus HOM05D002939 ORTHO05D003391 4.2e-08 61.2 68 36.8
ClCG11G018410 Citrullus lanatus HOM05D002939 ORTHO05D003391 5.5e-08 60.8 68 41.2
Gohir.A12G137100 Gossypium hirsutum HOM05D002939 ORTHO05D003391 5.5e-08 60.8 68 41.2
MBI02_g10552_MAGBIO Magnolia biondii HOM05D002939 ORTHO05D003391 5.5e-08 60.8 64 42.2
Medtr2g090080 Medicago truncatula HOM05D002939 ORTHO05D003391 5.5e-08 60.8 68 42.6
Actinidia30483 Actinidia chinensis HOM05D002939 ORTHO05D003391 7.1e-08 60.5 68 39.7
CiPaw.11G175200 Carya illinoinensis HOM05D002939 ORTHO05D003391 7.1e-08 60.5 68 38.2
Actinidia39301 Actinidia chinensis HOM05D002939 ORTHO05D003391 9.3e-08 60.1 68 39.7
Nitab4.5_0009520g0010 Nicotiana tabacum HOM05D002939 ORTHO05D003391 9.3e-08 60.1 69 44.9
Cc00_g21110 Coffea canephora HOM05D002939 ORTHO05D003391 1.2e-07 59.7 69 44.9
Nn1g03934 Nelumbo nucifera HOM05D002939 ORTHO05D003391 1.2e-07 59.7 69 42.0
Nn1g06722 Nelumbo nucifera HOM05D002939 ORTHO05D003391 1.2e-07 59.7 68 42.6
PSO675G2902 Papaver somniferum HOM05D002939 ORTHO05D003391 1.6e-07 59.3 68 39.7
Phvul.011G112300 Phaseolus vulgaris HOM05D002939 ORTHO05D003391 1.6e-07 59.3 68 39.7
vmacro09269 Vaccinium macrocarpon HOM05D002939 ORTHO05D003391 1.6e-07 59.3 68 38.2
VMungo1127G1304 Vigna mungo HOM05D002939 ORTHO05D003391 1.6e-07 59.3 68 39.7
CSS0037606 Camellia sinensis var. sinensis HOM05D002939 ORTHO05D003391 2.1e-07 58.9 68 39.7
Gohir.D12G141000 Gossypium hirsutum HOM05D002939 ORTHO05D003391 2.1e-07 58.9 68 39.7
Gorai.008G152400 Gossypium raimondii HOM05D002939 ORTHO05D003391 2.1e-07 58.9 68 39.7
PGR142G4146 Punica granatum HOM05D002939 ORTHO05D003391 2.1e-07 58.9 68 41.2
Sed0013833 Sechium edule HOM05D002939 ORTHO05D003391 2.1e-07 58.9 68 38.2
Glyma.06G297100 Glycine max HOM05D002939 ORTHO05D003391 2.7e-07 58.5 68 39.7
Medtr0072s0040 Medicago truncatula HOM05D002939 ORTHO05D003391 2.7e-07 58.5 68 38.2
Nitab4.5_0003018g0050 Nicotiana tabacum HOM05D002939 ORTHO05D003391 2.7e-07 58.5 68 45.6
TWI18G0096 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 2.7e-07 58.5 68 38.2
Glyma.12G108000 Glycine max HOM05D002939 ORTHO05D003391 3.5e-07 58.2 68 39.7
PSO541G3829 Papaver somniferum HOM05D002939 ORTHO05D003391 3.5e-07 58.2 68 38.2
Rhsim04G0066000 Rhododendron simsii HOM05D002939 ORTHO05D003391 3.5e-07 58.2 68 39.7
BcaC06g32639 Brassica carinata HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 38.2
BcaC09g50506 Brassica carinata HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 38.2
A01p19610 Brassica napus HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 38.2
C01p24640 Brassica napus HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 38.2
C07p56020 Brassica napus HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 38.2
BolC1t02414H Brassica oleracea HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 38.2
BraA01t01895Z Brassica rapa HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 38.2
MELO3C018202.2 Cucumis melo HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 39.7
CsaV3_3G044410 Cucumis sativus L. HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 39.7
Lalb_Chr22g0356401 Lupinus albus HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 39.7
MD17G1082000 Malus domestica HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 39.7
QL10p048471 Quercus lobata HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 39.7
Sp7g26140 Schrenkiella parvula HOM05D002939 ORTHO05D003391 4.6e-07 57.8 68 38.2
Thhalv10026038m.g Eutrema salsugineum HOM05D002939 ORTHO05D003391 6.1e-07 57.4 68 36.8
Lalb_Chr01g0005401 Lupinus albus HOM05D002939 ORTHO05D003391 6.1e-07 57.4 68 38.2
Psat7g199800 Pisum sativum HOM05D002939 ORTHO05D003391 6.1e-07 57.4 68 38.2
CiPaw.04G123300 Carya illinoinensis HOM05D002939 ORTHO05D003391 7.9e-07 57.0 68 39.7
COL.COLO4_13700 Corchorus olitorius HOM05D002939 ORTHO05D003391 7.9e-07 57.0 74 39.2
Nitab4.5_0007732g0030 Nicotiana tabacum HOM05D002939 ORTHO05D003391 7.9e-07 57.0 68 42.6
TPR.G21653 Trifolium pratense HOM05D002939 ORTHO05D003391 7.9e-07 57.0 69 39.1
CAN.G996.6 Capsicum annuum HOM05D002939 ORTHO05D003391 1.0e-06 56.6 62 40.3
Ca_20689_v3 Cicer arietinum L. HOM05D002939 ORTHO05D003391 1.0e-06 56.6 68 39.7
Duzib132G0253 Durio zibethinus HOM05D002939 ORTHO05D003391 1.0e-06 56.6 68 38.2
Sc06g0009200 Simmondsia chinensis HOM05D002939 ORTHO05D003391 1.0e-06 56.6 68 38.2
Atru.chr6.3050 Acer truncatum HOM05D002939 ORTHO05D003391 1.3e-06 56.2 68 38.2
A03p57900 Brassica napus HOM05D002939 ORTHO05D003391 1.3e-06 56.2 68 36.8
CiPaw.03G170900 Carya illinoinensis HOM05D002939 ORTHO05D003391 1.3e-06 56.2 68 39.7
Haze_13102 Corylus avellana HOM05D002939 ORTHO05D003391 1.3e-06 56.2 68 38.2
Lj3g0016336 Lotus japonicus HOM05D002939 ORTHO05D003391 1.3e-06 56.2 72 43.1
Peaxi162Scf00485g00037 Petunia axillaris HOM05D002939 ORTHO05D003391 1.3e-06 56.2 69 43.5
Thecc.02G173400 Theobroma cacao HOM05D002939 ORTHO05D003391 1.3e-06 56.2 69 42.0
HPP92_001810 Vanilla planifolia HOM05D002939 ORTHO05D003391 1.3e-06 56.2 62 41.9
ATR0693G042 Amborella trichopoda HOM05D002939 ORTHO05D003391 1.8e-06 55.8 62 37.1
Cfa014554 Carpinus fangiana HOM05D002939 ORTHO05D003391 1.8e-06 55.8 68 38.2
ClCG02G001270 Citrullus lanatus HOM05D002939 ORTHO05D003391 1.8e-06 55.8 68 36.8
Eucgr.F03351 Eucalyptus grandis HOM05D002939 ORTHO05D003391 1.8e-06 55.8 63 42.9
Lj1A734T67 Lonicera japonica HOM05D002939 ORTHO05D003391 1.8e-06 55.8 68 38.2
Lalb_Chr03g0029231 Lupinus albus HOM05D002939 ORTHO05D003391 1.8e-06 55.8 74 37.8
MD09G1092100 Malus domestica HOM05D002939 ORTHO05D003391 1.8e-06 55.8 68 38.2
Prupe.3G232900 Prunus persica HOM05D002939 ORTHO05D003391 1.8e-06 55.8 68 38.2
Aa31LG8G17660 Aethionema arabicum HOM05D002939 ORTHO05D003391 2.3e-06 55.5 68 36.8
Ciclev10016505m.g Citrus clementina HOM05D002939 ORTHO05D003391 2.3e-06 55.5 68 38.2
MELO3C018761.2 Cucumis melo HOM05D002939 ORTHO05D003391 2.3e-06 55.5 68 36.8
CsaV3_7G004160 Cucumis sativus L. HOM05D002939 ORTHO05D003391 2.3e-06 55.5 68 36.8
Gohir.A03G159200 Gossypium hirsutum HOM05D002939 ORTHO05D003391 2.3e-06 55.5 69 40.6
Gohir.D02G182400 Gossypium hirsutum HOM05D002939 ORTHO05D003391 2.3e-06 55.5 69 40.6
Gorai.005G204800 Gossypium raimondii HOM05D002939 ORTHO05D003391 2.3e-06 55.5 69 40.6
Manes.15G083700 Manihot esculenta HOM05D002939 ORTHO05D003391 2.3e-06 55.5 68 41.2
Potri.019G104500 Populus trichocarpa HOM05D002939 ORTHO05D003391 2.3e-06 55.5 62 38.7
GSVIVG01030570001 Vitis vinifera HOM05D002939 ORTHO05D003391 2.3e-06 55.5 68 38.2
CARHR235900 Cardamine hirsuta HOM05D002939 ORTHO05D003391 3.0e-06 55.1 68 36.8
Manes.12G079700 Manihot esculenta HOM05D002939 ORTHO05D003391 3.0e-06 55.1 62 38.7
SHI10467 Sapria himalayana HOM05D002939 ORTHO05D003391 3.0e-06 55.1 62 41.9
Sed0018022 Sechium edule HOM05D002939 ORTHO05D003391 3.0e-06 55.1 69 37.7
BcaNung01589 Brassica carinata HOM05D002939 ORTHO05D003391 3.9e-06 54.7 68 36.8
CANSAT64G1668 Cannabis sativa HOM05D002939 ORTHO05D003391 3.9e-06 54.7 68 38.2
RcHm_v2.0_Chr2g0162081 Rosa chinensis HOM05D002939 ORTHO05D003391 3.9e-06 54.7 68 36.8
THA.LOC104804063 Tarenaya hassleriana HOM05D002939 ORTHO05D003391 3.9e-06 54.7 68 39.7
Carub.0003s3545 Capsella rubella HOM05D002939 ORTHO05D003391 5.1e-06 54.3 68 35.3
Lsat_1_v5_gn_4_68920 Lactuca sativa HOM05D002939 ORTHO05D003391 5.1e-06 54.3 68 39.7
Nitab4.5_0000297g0080 Nicotiana tabacum HOM05D002939 ORTHO05D003391 5.1e-06 54.3 42 52.4
Sabra13G0117100 Salix brachista HOM05D002939 ORTHO05D003391 5.1e-06 54.3 68 35.3
Sabra19G0114900 Salix brachista HOM05D002939 ORTHO05D003391 5.1e-06 54.3 62 38.7
TAR626G0871 Trochodendron aralioides HOM05D002939 ORTHO05D003391 5.1e-06 54.3 68 38.2
BraA03t14854Z Brassica rapa HOM05D002939 ORTHO05D003391 6.7e-06 53.9 68 35.3
Cpa.g.sc34.111 Carica papaya HOM05D002939 ORTHO05D003391 6.7e-06 53.9 68 36.8
Lj3g0000198 Lotus japonicus HOM05D002939 ORTHO05D003391 6.7e-06 53.9 68 39.7
Manes.13G150600 Manihot esculenta HOM05D002939 ORTHO05D003391 6.7e-06 53.9 62 38.7
Os01g0780800 Oryza sativa ssp. japonica HOM05D002939 ORTHO05D003391 6.7e-06 53.9 62 43.5
Potri.013G145400 Populus trichocarpa HOM05D002939 ORTHO05D003391 6.7e-06 53.9 68 35.3
BolC7t46079H Brassica oleracea HOM05D002939 ORTHO05D003391 8.7e-06 53.5 68 35.3
FAN02G0547 Fragaria x ananassa HOM05D002939 ORTHO05D003391 8.7e-06 53.5 68 35.3
FAN09G4592 Fragaria x ananassa HOM05D002939 ORTHO05D003391 8.7e-06 53.5 68 35.3
Peaxi162Scf01111g00019 Petunia axillaris HOM05D002939 ORTHO05D003391 8.7e-06 53.5 42 52.4


User provided reference genes

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