Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c34760 Carica papaya HOM05D003493 ORTHO05D003980 3.6e-31 137.5 65 100.0
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 7.9e-26 119.8 65 81.5
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 7.9e-26 119.8 65 81.5
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 7.9e-26 119.8 65 81.5
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 7.9e-26 119.8 65 83.1
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.3e-25 119.0 65 81.5
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.3e-25 119.0 65 81.5
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 5.1e-25 117.1 65 80.0
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 5.1e-25 117.1 65 80.0
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 8.7e-25 116.3 65 80.0
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 8.7e-25 116.3 65 78.5
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 1.1e-24 115.9 65 78.5
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 1.5e-24 115.5 65 78.5
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 1.5e-24 115.5 65 76.9
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 2.5e-24 114.8 65 76.9
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 3.3e-24 114.4 65 78.5
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 3.3e-24 114.4 65 81.5
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 4.3e-24 114.0 65 78.5
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 4.3e-24 114.0 65 75.4
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 4.3e-24 114.0 65 75.4
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 5.6e-24 113.6 65 76.9
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 5.6e-24 113.6 65 76.9
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 5.6e-24 113.6 65 76.9
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 5.6e-24 113.6 65 76.9
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 5.6e-24 113.6 65 75.4
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 7.4e-24 113.2 65 78.5
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 7.4e-24 113.2 65 72.3
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 7.4e-24 113.2 65 76.9
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 7.4e-24 113.2 65 76.9
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 9.6e-24 112.8 65 76.9
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 9.6e-24 112.8 65 76.9
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 9.6e-24 112.8 65 76.9
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 9.6e-24 112.8 65 76.9
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 9.6e-24 112.8 65 76.9
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 9.6e-24 112.8 65 73.8
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 1.3e-23 112.5 65 76.9
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 1.3e-23 112.5 65 76.9
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 1.3e-23 112.5 65 76.9
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 1.3e-23 112.5 65 76.9
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 1.3e-23 112.5 65 75.4
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 1.3e-23 112.5 65 78.5
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 1.3e-23 112.5 65 72.3
QL10p035454 Quercus lobata HOM05D003493 ORTHO05D003980 1.3e-23 112.5 65 75.4
QL10p036794 Quercus lobata HOM05D003493 ORTHO05D003980 1.3e-23 112.5 65 75.4
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 1.3e-23 112.5 65 76.9
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.1e-23 111.7 65 73.8
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.1e-23 111.7 65 75.4
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 2.1e-23 111.7 65 75.4
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 2.8e-23 111.3 65 76.9
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 2.8e-23 111.3 65 73.8
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 3.7e-23 110.9 65 70.8
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 3.7e-23 110.9 65 73.8
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 3.7e-23 110.9 65 72.3
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 4.8e-23 110.5 65 73.8
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 4.8e-23 110.5 65 75.4
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 6.2e-23 110.2 65 72.3
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 6.2e-23 110.2 65 72.3
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 8.1e-23 109.8 65 73.8
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 8.1e-23 109.8 65 70.8
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 1.1e-22 109.4 65 73.8
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 1.1e-22 109.4 65 70.8
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 1.1e-22 109.4 65 72.3
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 1.1e-22 109.4 65 70.8
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 1.1e-22 109.4 65 72.3
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 1.4e-22 109.0 65 72.3
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.4e-22 109.0 65 72.3
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.4e-22 109.0 65 72.3
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 1.8e-22 108.6 65 73.8
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 1.8e-22 108.6 64 71.9
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 1.8e-22 108.6 65 72.3
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 2.4e-22 108.2 65 72.3
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 2.4e-22 108.2 65 72.3
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 3.1e-22 107.8 65 72.3
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 3.1e-22 107.8 65 73.8
Phvul.L006701 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 3.1e-22 107.8 65 70.8
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 4.0e-22 107.5 65 70.8
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 6.9e-22 106.7 65 70.8
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 9.0e-22 106.3 65 70.8
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 9.0e-22 106.3 65 70.8
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 9.0e-22 106.3 65 69.2
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 9.0e-22 106.3 65 69.2
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 9.0e-22 106.3 65 69.2
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 9.0e-22 106.3 65 70.8
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 9.0e-22 106.3 65 66.2
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 1.2e-21 105.9 65 70.8
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 1.2e-21 105.9 65 70.8
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 1.2e-21 105.9 65 69.2
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 1.2e-21 105.9 65 69.2
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 1.2e-21 105.9 65 70.8
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 2.0e-21 105.1 65 69.2
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 2.0e-21 105.1 65 67.7
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 2.0e-21 105.1 65 69.2
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 2.0e-21 105.1 65 67.7
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 2.6e-21 104.8 65 69.2
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 2.6e-21 104.8 65 69.2
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 3.4e-21 104.4 65 70.8
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 3.4e-21 104.4 65 69.2
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 3.4e-21 104.4 65 69.2
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 4.5e-21 104.0 65 69.2
DCAR_011395 Daucus carota HOM05D003493 ORTHO05D003980 4.5e-21 104.0 65 72.3
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 4.5e-21 104.0 65 67.7
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 5.8e-21 103.6 65 69.2
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 1.0e-20 102.8 65 70.8
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 1.0e-20 102.8 65 70.8
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 1.0e-20 102.8 65 70.8
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 1.0e-20 102.8 65 63.1
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 1.3e-20 102.4 65 67.7
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 1.3e-20 102.4 65 64.6
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 1.3e-20 102.4 65 64.6
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.3e-20 102.4 65 66.2
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.3e-20 102.4 65 66.2
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 1.7e-20 102.1 65 67.7
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 1.7e-20 102.1 65 67.7
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 2.2e-20 101.7 65 69.2
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 2.9e-20 101.3 65 66.2
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 2.9e-20 101.3 65 64.6
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 3.8e-20 100.9 64 68.8
Oeu063704.1 Olea europaea HOM05D003493 ORTHO05D003980 3.8e-20 100.9 65 64.6
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 4.9e-20 100.5 65 64.6
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 6.5e-20 100.1 65 69.2
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 1.1e-19 99.4 65 61.5
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 1.1e-19 99.4 65 64.6
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 1.1e-19 99.4 65 63.1
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 1.1e-19 99.4 65 63.1
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 1.1e-19 99.4 65 64.6
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 1.4e-19 99.0 65 64.6
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 1.4e-19 99.0 65 63.1
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 1.4e-19 99.0 65 63.1
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 1.9e-19 98.6 64 68.8
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 4.2e-19 97.4 65 61.5
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 5.5e-19 97.1 65 61.5
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 5.5e-19 97.1 65 61.5
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 5.5e-19 97.1 65 61.5
arahy.Tifrunner.gnm1.ann1.Y1U1WE Arachis hypogaea HOM05D003493 ORTHO05D003980 7.1e-19 96.7 65 61.5
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 7.1e-19 96.7 65 67.7
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 9.3e-19 96.3 65 60.0
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 9.3e-19 96.3 65 60.0
Oeu034418.1 Olea europaea HOM05D003493 ORTHO05D003980 9.3e-19 96.3 59 66.1
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 1.6e-18 95.5 65 63.1
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 2.1e-18 95.1 65 63.1
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 2.7e-18 94.7 65 64.6
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 3.5e-18 94.4 65 66.2
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 4.6e-18 94.0 65 64.6
arahy.Tifrunner.gnm1.ann1.AF40JB Arachis hypogaea HOM05D003493 ORTHO05D003980 1.0e-17 92.8 65 58.5
arahy.Tifrunner.gnm1.ann1.LRB6U9 Arachis hypogaea HOM05D003493 ORTHO05D003980 1.3e-17 92.4 65 58.5
arahy.Tifrunner.gnm1.ann1.PSQB2R Arachis hypogaea HOM05D003493 ORTHO05D003980 1.3e-17 92.4 65 58.5
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 3.0e-17 91.3 65 58.5
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 3.0e-17 91.3 65 56.9
CDE04G1302 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 3.9e-17 90.9 65 56.9
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 2.5e-16 88.2 65 55.4
arahy.Tifrunner.gnm1.ann1.XN9UYN Arachis hypogaea HOM05D003493 ORTHO05D003980 2.4e-14 81.6 49 67.3
arahy.Tifrunner.gnm1.ann1.PE1W7W Arachis hypogaea HOM05D003493 ORTHO05D003980 1.5e-13 79.0 49 65.3
Mapoly0036s0110 Marchantia polymorpha HOM05D003493 ORTHO05D003980 1.9e-11 72.0 65 44.6
AagrBONN_evm.TU.Sc2ySwM_368.2475 Anthoceros agrestis HOM05D003493 ORTHO05D003980 4.2e-11 70.9 65 41.5
SMO361G0167 Selaginella moellendorffii HOM05D003493 ORTHO05D003980 3.5e-10 67.8 65 41.5
Pp3c5_12280 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.3e-09 65.9 65 41.5
Pp3c1_25660 Physcomitrium patens HOM05D003493 ORTHO05D003980 2.3e-09 65.1 65 41.5
Pp3c14_11980 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.1e-08 62.8 65 40.0
Pp3c6_14220 Physcomitrium patens HOM05D003493 ORTHO05D003980 4.8e-07 57.4 60 41.7
Pp3c17_10430 Physcomitrium patens HOM05D003493 ORTHO05D003980 8.2e-07 56.6 65 38.5


User provided reference genes

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