Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c34075 Carica papaya HOM05D000476 ORTHO05D004793 4.1e-176 621.3 320 100.0
GSVIVG01008847001 Vitis vinifera HOM05D000476 ORTHO05D004793 8.1e-31 138.7 247 40.5
TAR376G1218 Trochodendron aralioides HOM05D000476 ORTHO05D004793 1.7e-28 131.0 247 40.1
TAR628G0277 Trochodendron aralioides HOM05D000476 ORTHO05D004793 7.1e-27 125.6 251 37.1
Nn5g28349 Nelumbo nucifera HOM05D000476 ORTHO05D004793 1.3e-25 121.3 243 38.3
Aqoxy6G00244 Aquilegia oxysepala HOM05D000476 ORTHO05D004793 1.1e-22 111.7 325 30.8
PSO528G0237 Papaver somniferum HOM05D000476 ORTHO05D004793 2.4e-22 110.5 231 35.1
PGR042G1908 Punica granatum HOM05D000476 ORTHO05D004793 8.9e-22 108.6 338 29.3
PSO170G0379 Papaver somniferum HOM05D000476 ORTHO05D004793 5.8e-21 105.9 333 29.4
Eucgr.F03798 Eucalyptus grandis HOM05D000476 ORTHO05D004793 7.6e-21 105.5 281 32.4
Manes.02G165000 Manihot esculenta HOM05D000476 ORTHO05D004793 9.9e-21 105.1 240 36.7
Cpa.g.sc64.101 Carica papaya HOM05D000476 ORTHO05D004793 2.2e-20 104.0 233 35.2
Nn1g08860 Nelumbo nucifera HOM05D000476 ORTHO05D004793 2.9e-20 103.6 250 35.2
FAN27G2251 Fragaria x ananassa HOM05D000476 ORTHO05D004793 8.4e-20 102.1 285 34.0
FAN20G2940 Fragaria x ananassa HOM05D000476 ORTHO05D004793 2.4e-19 100.5 286 32.9
QL09p034047 Quercus lobata HOM05D000476 ORTHO05D004793 3.2e-19 100.1 240 37.1
Sed0014829 Sechium edule HOM05D000476 ORTHO05D004793 9.2e-19 98.6 218 38.1
Potri.005G070200 Populus trichocarpa HOM05D000476 ORTHO05D004793 1.2e-18 98.2 288 31.2
FvH4_2g27210 Fragaria vesca HOM05D000476 ORTHO05D004793 1.6e-18 97.8 286 32.9
FAN24G1930 Fragaria x ananassa HOM05D000476 ORTHO05D004793 1.6e-18 97.8 286 32.9
Dinv30332 Davidia involucrata HOM05D000476 ORTHO05D004793 2.1e-18 97.4 319 30.4
HanXRQChr09g0260561 Helianthus annuus HOM05D000476 ORTHO05D004793 4.6e-18 96.3 234 36.3
Prupe.1G494000 Prunus persica HOM05D000476 ORTHO05D004793 6.0e-18 95.9 360 32.2
TWI79G0194 Tripterygium wilfordii HOM05D000476 ORTHO05D004793 1.0e-17 95.1 264 33.3
TWI60G0517 Tripterygium wilfordii HOM05D000476 ORTHO05D004793 1.7e-17 94.4 313 31.6
Actinidia02627 Actinidia chinensis HOM05D000476 ORTHO05D004793 3.0e-17 93.6 259 33.2
ClCG11G015820 Citrullus lanatus HOM05D000476 ORTHO05D004793 3.9e-17 93.2 216 33.3
CsaV3_4G028160 Cucumis sativus L. HOM05D000476 ORTHO05D004793 5.1e-17 92.8 216 36.1
Oeu001527.1 Olea europaea HOM05D000476 ORTHO05D004793 6.6e-17 92.4 293 30.7
Sabra05G0057100 Salix brachista HOM05D000476 ORTHO05D004793 6.6e-17 92.4 222 33.3
CiPaw.16G066700 Carya illinoinensis HOM05D000476 ORTHO05D004793 1.5e-16 91.3 230 35.2
MELO3C010492.2 Cucumis melo HOM05D000476 ORTHO05D004793 1.9e-16 90.9 216 35.6
Dinv07204 Davidia involucrata HOM05D000476 ORTHO05D004793 1.9e-16 90.9 259 31.7
Gohir.A05G236100 Gossypium hirsutum HOM05D000476 ORTHO05D004793 1.9e-16 90.9 307 31.3
Haze_17503 Corylus avellana HOM05D000476 ORTHO05D004793 3.3e-16 90.1 311 30.9
AUR62014322 Chenopodium quinoa HOM05D000476 ORTHO05D004793 4.3e-16 89.7 248 35.1
Gohir.D05G238300 Gossypium hirsutum HOM05D000476 ORTHO05D004793 4.3e-16 89.7 307 31.9
Ah.05g170990 Amaranthus hybridus HOM05D000476 ORTHO05D004793 5.6e-16 89.4 248 35.1
Duzib116G0706 Durio zibethinus HOM05D000476 ORTHO05D004793 5.6e-16 89.4 219 37.0
Gorai.009G246800 Gossypium raimondii HOM05D000476 ORTHO05D004793 5.6e-16 89.4 307 30.6
Rhsim06G0102200 Rhododendron simsii HOM05D000476 ORTHO05D004793 5.6e-16 89.4 272 32.7
Cfa018578 Carpinus fangiana HOM05D000476 ORTHO05D004793 7.3e-16 89.0 311 32.2
Ciclev10000180m.g Citrus clementina HOM05D000476 ORTHO05D004793 7.3e-16 89.0 240 33.8
COL.COLO4_24708 Corchorus olitorius HOM05D000476 ORTHO05D004793 7.3e-16 89.0 222 34.7
Thecc.08G127900 Theobroma cacao HOM05D000476 ORTHO05D004793 7.3e-16 89.0 219 34.2
Actinidia21330 Actinidia chinensis HOM05D000476 ORTHO05D004793 9.6e-16 88.6 296 32.1
MD08G1161000 Malus domestica HOM05D000476 ORTHO05D004793 1.2e-15 88.2 237 35.4
RcHm_v2.0_Chr6g0296121 Rosa chinensis HOM05D000476 ORTHO05D004793 1.2e-15 88.2 282 32.6
Phvul.009G126600 Phaseolus vulgaris HOM05D000476 ORTHO05D004793 2.1e-15 87.4 223 36.3
MSTRG.1435 Avicennia marina HOM05D000476 ORTHO05D004793 2.8e-15 87.0 278 29.9
Lj1g0025531 Lotus japonicus HOM05D000476 ORTHO05D004793 2.8e-15 87.0 244 33.6
FAN15G0150 Fragaria x ananassa HOM05D000476 ORTHO05D004793 4.7e-15 86.3 291 31.6
Lsat_1_v5_gn_5_101441 Lactuca sativa HOM05D000476 ORTHO05D004793 4.7e-15 86.3 256 34.8
Lj7A343T65 Lonicera japonica HOM05D000476 ORTHO05D004793 4.7e-15 86.3 274 28.1
MBI03_g47986_MAGBIO Magnolia biondii HOM05D000476 ORTHO05D004793 4.7e-15 86.3 225 35.1
MD15G1346100 Malus domestica HOM05D000476 ORTHO05D004793 4.7e-15 86.3 232 35.3
SalBow7G0538 Salvia bowleyana HOM05D000476 ORTHO05D004793 8.1e-15 85.5 409 26.7
Hma1.2p1_0054F.1_g031110 Hydrangea macrophylla HOM05D000476 ORTHO05D004793 1.1e-14 85.1 239 33.5
Hund17303 Selenicereus undatus HOM05D000476 ORTHO05D004793 1.1e-14 85.1 241 34.0
Duzib093G1403 Durio zibethinus HOM05D000476 ORTHO05D004793 1.4e-14 84.7 320 30.0
Thhalv10018106m.g Eutrema salsugineum HOM05D000476 ORTHO05D004793 1.4e-14 84.7 263 34.6
Solyc06g060270.4 Solanum lycopersicum HOM05D000476 ORTHO05D004793 1.8e-14 84.3 367 28.9
Atru.chr13.1497 Acer truncatum HOM05D000476 ORTHO05D004793 2.4e-14 84.0 265 32.5
BraA06t24875Z Brassica rapa HOM05D000476 ORTHO05D004793 3.1e-14 83.6 287 30.7
Potri.002G082000 Populus trichocarpa HOM05D000476 ORTHO05D004793 3.1e-14 83.6 220 35.0
Sopen06g020390 Solanum pennellii HOM05D000476 ORTHO05D004793 3.1e-14 83.6 371 28.0
AT1G21740 Arabidopsis thaliana HOM05D000476 ORTHO05D004793 4.0e-14 83.2 278 30.6
EL10Ac1g01035 Beta vulgaris HOM05D000476 ORTHO05D004793 5.2e-14 82.8 266 30.5
BcaB07g32173 Brassica carinata HOM05D000476 ORTHO05D004793 5.2e-14 82.8 262 31.7
ECA236G3642 Erigeron canadensis HOM05D000476 ORTHO05D004793 6.9e-14 82.4 226 33.2
Oeu050918.1 Olea europaea HOM05D000476 ORTHO05D004793 6.9e-14 82.4 301 29.6
Sabra02G0064200 Salix brachista HOM05D000476 ORTHO05D004793 6.9e-14 82.4 349 28.9
PGSC0003DMG401017555 Solanum tuberosum HOM05D000476 ORTHO05D004793 9.0e-14 82.0 372 29.3
DCAR_014385 Daucus carota HOM05D000476 ORTHO05D004793 1.2e-13 81.6 266 30.5
ECA232G4909 Erigeron canadensis HOM05D000476 ORTHO05D004793 1.2e-13 81.6 231 34.2
Aa31LG7G5720 Aethionema arabicum HOM05D000476 ORTHO05D004793 1.5e-13 81.3 263 31.2
Dinv27295 Davidia involucrata HOM05D000476 ORTHO05D004793 1.5e-13 81.3 251 29.1
THA.LOC104813668 Tarenaya hassleriana HOM05D000476 ORTHO05D004793 2.0e-13 80.9 291 29.6
AL1G34940 Arabidopsis lyrata HOM05D000476 ORTHO05D004793 2.6e-13 80.5 278 30.2
A06p17840 Brassica napus HOM05D000476 ORTHO05D004793 2.6e-13 80.5 287 30.3
BraA07t31816Z Brassica rapa HOM05D000476 ORTHO05D004793 2.6e-13 80.5 236 33.1
CANSAT25G2364 Cannabis sativa HOM05D000476 ORTHO05D004793 4.4e-13 79.7 257 32.7
CARHR071020 Cardamine hirsuta HOM05D000476 ORTHO05D004793 4.4e-13 79.7 261 31.0
Carub.0001s2119 Capsella rubella HOM05D000476 ORTHO05D004793 5.8e-13 79.3 272 30.9
ATR0709G082 Amborella trichopoda HOM05D000476 ORTHO05D004793 7.6e-13 79.0 242 33.9
THA.LOC104804460 Tarenaya hassleriana HOM05D000476 ORTHO05D012951 7.6e-13 79.0 216 33.8
AT1G77500 Arabidopsis thaliana HOM05D000476 ORTHO05D004793 9.9e-13 78.6 260 31.2
CSS0036309 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D004793 1.3e-12 78.2 319 30.4
CARHR022130 Cardamine hirsuta HOM05D000476 ORTHO05D004793 1.3e-12 78.2 266 30.5
Migut.C01119 Erythranthe guttata HOM05D000476 ORTHO05D004793 1.3e-12 78.2 299 28.8
A07p42950 Brassica napus HOM05D000476 ORTHO05D004793 1.7e-12 77.8 236 32.6
MSTRG.25376 Avicennia marina HOM05D000476 ORTHO05D004793 2.2e-12 77.4 308 26.9
Lsat_1_v5_gn_4_136240 Lactuca sativa HOM05D000476 ORTHO05D004793 2.2e-12 77.4 220 35.0
HanXRQChr11g0326101 Helianthus annuus HOM05D000476 ORTHO05D004793 2.9e-12 77.0 227 33.9
BcaC08g47607 Brassica carinata HOM05D000476 ORTHO05D004793 3.8e-12 76.6 235 31.9
BolC6t40177H Brassica oleracea HOM05D000476 ORTHO05D004793 3.8e-12 76.6 235 31.9
AL2G37700 Arabidopsis lyrata HOM05D000476 ORTHO05D004793 4.9e-12 76.3 262 30.9
arahy.Tifrunner.gnm1.ann1.GD39GL Arachis hypogaea HOM05D000476 ORTHO05D004793 6.4e-12 75.9 266 30.8
Sabra05G0135500 Salix brachista HOM05D000476 ORTHO05D004793 6.4e-12 75.9 206 35.0
Solyc01g112050.3 Solanum lycopersicum HOM05D000476 ORTHO05D002733 1.1e-11 75.1 313 28.1
CDE04G1385 Ceratophyllum demersum HOM05D000476 ORTHO05D004793 1.4e-11 74.7 228 30.3
Lalb_Chr11g0066011 Lupinus albus HOM05D000476 ORTHO05D004793 1.4e-11 74.7 341 27.0
HPP92_019390 Vanilla planifolia HOM05D000476 ORTHO05D004793 3.2e-11 73.6 257 30.0
C06p51570 Brassica napus HOM05D000476 ORTHO05D004793 4.2e-11 73.2 235 31.5
Cc10_g12070 Coffea canephora HOM05D000476 ORTHO05D004793 4.2e-11 73.2 250 30.8
Potri.005G179100 Populus trichocarpa HOM05D000476 ORTHO05D004793 4.2e-11 73.2 266 33.1
Actinidia20053 Actinidia chinensis HOM05D000476 ORTHO05D004793 7.1e-11 72.4 268 31.3
Aa31LG4G7510 Aethionema arabicum HOM05D000476 ORTHO05D004793 7.1e-11 72.4 290 29.3
Carub.0002s2439 Capsella rubella HOM05D000476 ORTHO05D004793 9.3e-11 72.0 269 30.9
arahy.Tifrunner.gnm1.ann1.7GBM4B Arachis hypogaea HOM05D000476 ORTHO05D004793 1.6e-10 71.2 266 30.1
CSS0024451 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D004793 2.1e-10 70.9 231 30.7
AUR62019061 Chenopodium quinoa HOM05D000476 ORTHO05D004793 2.1e-10 70.9 251 31.5
Ah.01g023610 Amaranthus hybridus HOM05D000476 ORTHO05D002733 2.7e-10 70.5 284 29.9
C05p20750 Brassica napus HOM05D000476 ORTHO05D004793 2.7e-10 70.5 254 31.5
BolC5t30774H Brassica oleracea HOM05D000476 ORTHO05D004793 2.7e-10 70.5 254 31.5
CAN.G643.18 Capsicum annuum HOM05D000476 ORTHO05D004793 2.7e-10 70.5 101 43.6
Sp5g32660 Schrenkiella parvula HOM05D000476 ORTHO05D004793 2.7e-10 70.5 273 31.1
CAN.G1235.20 Capsicum annuum HOM05D000476 ORTHO05D002733 3.5e-10 70.1 317 28.1
Glyma.04G248100 Glycine max HOM05D000476 ORTHO05D004793 3.5e-10 70.1 235 32.8
Manes.18G078700 Manihot esculenta HOM05D000476 ORTHO05D004793 3.5e-10 70.1 241 29.9
C02p17370 Brassica napus HOM05D000476 ORTHO05D004793 4.6e-10 69.7 236 32.2
BolC2t07847H Brassica oleracea HOM05D000476 ORTHO05D004793 4.6e-10 69.7 236 32.2
Sopen01g054100 Solanum pennellii HOM05D000476 ORTHO05D002733 6.0e-10 69.3 308 27.9
BcaC05g26095 Brassica carinata HOM05D000476 ORTHO05D004793 7.8e-10 68.9 257 30.4
MD05G1131700 Malus domestica HOM05D000476 ORTHO05D002733 1.0e-09 68.6 304 27.6
CDE02G3767 Ceratophyllum demersum HOM05D000476 ORTHO05D002733 2.3e-09 67.4 206 28.2
BcaB03g15948 Brassica carinata HOM05D000476 ORTHO05D004793 3.0e-09 67.0 236 31.4
Glyma.06G114600 Glycine max HOM05D000476 ORTHO05D004793 3.0e-09 67.0 211 35.1
Nitab4.5_0000322g0130 Nicotiana tabacum HOM05D000476 ORTHO05D004793 6.6e-09 65.9 244 30.3
SEGI_17897 Sequoiadendron giganteum HOM05D000476 ORTHO05D005719 6.6e-09 65.9 215 29.3
Ca_16570_v3 Cicer arietinum L. HOM05D000476 ORTHO05D004793 8.7e-09 65.5 190 32.6
SGA_v2.0_scaffold52G18958 Striga asiatica HOM05D000476 ORTHO05D004793 1.1e-08 65.1 326 27.3
Zm00001eb321050 Zea mays HOM05D000476 ORTHO05D002733 1.1e-08 65.1 205 31.2
PSO782G5369 Papaver somniferum HOM05D000476 ORTHO05D002733 1.9e-08 64.3 203 29.1
CDE06G1218 Ceratophyllum demersum HOM05D000476 ORTHO05D002733 2.5e-08 63.9 269 25.3
Medtr3g088190 Medicago truncatula HOM05D000476 ORTHO05D004793 2.5e-08 63.9 199 31.7
Sed0009158 Sechium edule HOM05D000476 ORTHO05D002733 3.3e-08 63.5 195 32.3
Aa31LG8G14510 Aethionema arabicum HOM05D000476 ORTHO05D002733 4.3e-08 63.2 270 28.1
MELO3C013266.2 Cucumis melo HOM05D000476 ORTHO05D002733 5.6e-08 62.8 311 29.6
CsaV3_7G001730 Cucumis sativus L. HOM05D000476 ORTHO05D002733 7.3e-08 62.4 310 28.7
Zm00001eb104210 Zea mays HOM05D000476 ORTHO05D002733 7.3e-08 62.4 205 29.8
Zm00001eb288380 Zea mays HOM05D000476 ORTHO05D004793 7.3e-08 62.4 309 25.6
ClCG02G003580 Citrullus lanatus HOM05D000476 ORTHO05D002733 1.3e-07 61.6 316 29.7
Nitab4.5_0011334g0020 Nicotiana tabacum HOM05D000476 ORTHO05D004793 1.6e-07 61.2 242 29.8
PGR142G3940 Punica granatum HOM05D000476 ORTHO05D002733 1.6e-07 61.2 196 33.7
SGA_v2.0_scaffold24G10453 Striga asiatica HOM05D000476 ORTHO05D004793 1.6e-07 61.2 320 26.9
ECA233G3309 Erigeron canadensis HOM05D000476 ORTHO05D004793 2.1e-07 60.8 74 43.2
Os09g0547300 Oryza sativa ssp. japonica HOM05D000476 ORTHO05D002733 2.1e-07 60.8 243 29.6
PSO478G3910 Papaver somniferum HOM05D000476 ORTHO05D002733 2.1e-07 60.8 203 28.1
ATR0661G378 Amborella trichopoda HOM05D000476 ORTHO05D002733 2.8e-07 60.5 215 29.8
BcaNung04413 Brassica carinata HOM05D000476 ORTHO05D004987 2.8e-07 60.5 248 27.8
Psat5g086680 Pisum sativum HOM05D000476 ORTHO05D004793 2.8e-07 60.5 78 47.4
TPR.G19285 Trifolium pratense HOM05D000476 ORTHO05D004793 4.8e-07 59.7 232 30.6
HPP92_000100 Vanilla planifolia HOM05D000476 ORTHO05D004793 4.8e-07 59.7 204 27.9
MSTRG.19951 Avicennia marina HOM05D000476 ORTHO05D002733 8.1e-07 58.9 304 24.7
Nitab4.5_0001700g0100 Nicotiana tabacum HOM05D000476 ORTHO05D002733 8.1e-07 58.9 239 27.2
Peaxi162Scf00051g01114 Petunia axillaris HOM05D000476 ORTHO05D004793 8.1e-07 58.9 217 29.0
unitig_46.g18091 Utricularia gibba HOM05D000476 ORTHO05D004793 8.1e-07 58.9 287 24.4
CANSAT25G0999 Cannabis sativa HOM05D000476 ORTHO05D002733 1.1e-06 58.5 196 30.1
Prupe.8G176200 Prunus persica HOM05D000476 ORTHO05D002733 1.1e-06 58.5 195 29.7
Aqoxy6G01760 Aquilegia oxysepala HOM05D000476 ORTHO05D002733 1.8e-06 57.8 198 28.8
ECA234G4679 Erigeron canadensis HOM05D000476 ORTHO05D004793 1.8e-06 57.8 137 29.9
Nitab4.5_0005649g0020 Nicotiana tabacum HOM05D000476 ORTHO05D002733 1.8e-06 57.8 233 27.0
Sc08g0002490 Simmondsia chinensis HOM05D000476 ORTHO05D002733 1.8e-06 57.8 200 31.5
PGSC0003DMG400016824 Solanum tuberosum HOM05D000476 ORTHO05D002733 2.4e-06 57.4 206 28.2
TWI75G1315 Tripterygium wilfordii HOM05D000476 ORTHO05D002733 2.4e-06 57.4 286 27.6
Haze_02039 Corylus avellana HOM05D000476 ORTHO05D002733 3.1e-06 57.0 197 29.4
Dinv41890 Davidia involucrata HOM05D000476 ORTHO05D002733 4.0e-06 56.6 198 28.8
AUR62012944 Chenopodium quinoa HOM05D000476 ORTHO05D002733 5.3e-06 56.2 198 30.8
Dinv14153 Davidia involucrata HOM05D000476 ORTHO05D002733 5.3e-06 56.2 193 29.0
Solyc10g074470.3 Solanum lycopersicum HOM05D000476 ORTHO05D002733 5.3e-06 56.2 301 24.3
Gorai.002G205400 Gossypium raimondii HOM05D000476 ORTHO05D002733 6.9e-06 55.8 300 28.3
Oeu062470.1 Olea europaea HOM05D000476 ORTHO05D002733 6.9e-06 55.8 195 32.3
PSO541G0075 Papaver somniferum HOM05D000476 ORTHO05D002733 6.9e-06 55.8 205 31.7
Sp1g19300 Schrenkiella parvula HOM05D000476 ORTHO05D004793 6.9e-06 55.8 278 25.5
Sopen10g026980 Solanum pennellii HOM05D000476 ORTHO05D002733 6.9e-06 55.8 304 23.7
Cfa005338 Carpinus fangiana HOM05D000476 ORTHO05D002733 9.0e-06 55.5 197 29.4
CiPaw.05G090100 Carya illinoinensis HOM05D000476 ORTHO05D002733 9.0e-06 55.5 195 28.2
SalBow5G3110 Salvia bowleyana HOM05D000476 ORTHO05D002733 9.0e-06 55.5 191 28.3


User provided reference genes

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